RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 ACIN1Q9UKV3 1341 aaKnown RBP23.09■■□□□ 1.29
USH1C-204ENST00000526313 KDM6BO15054 1643 aa23.09■■□□□ 1.29
USH1C-204ENST00000526313 CAMSAP2Q08AD1 1489 aa23.08■■□□□ 1.29
USH1C-204ENST00000526313 CFDP1Q9UEE9 299 aaPredicted RBP23.08■■□□□ 1.28
USH1C-204ENST00000526313 CLASP1Q7Z460 1538 aa23.07■■□□□ 1.28
USH1C-204ENST00000526313 NEUROD1Q13562 356 aa23.06■■□□□ 1.28
USH1C-204ENST00000526313 DENND4BO75064 1496 aaPredicted RBP23.04■■□□□ 1.28
USH1C-204ENST00000526313 CDC42BPAQ5VT25 1732 aa23.04■■□□□ 1.28
USH1C-204ENST00000526313 PPP1R15AO75807 674 aaPredicted RBP23.03■■□□□ 1.28
USH1C-204ENST00000526313 ERCC6L2Q5T890 1561 aa23.02■■□□□ 1.28
USH1C-204ENST00000526313 ADGRL2O95490 1459 aa23■■□□□ 1.27
USH1C-204ENST00000526313 CROCC2H7BZ55 1655 aa22.99■■□□□ 1.27
USH1C-204ENST00000526313 ADGBQ8N7X0 1667 aa22.97■■□□□ 1.27
USH1C-204ENST00000526313 NCOA1Q15788 1441 aa22.97■■□□□ 1.27
USH1C-204ENST00000526313 ABCC2Q92887 1545 aa22.97■■□□□ 1.27
USH1C-204ENST00000526313 MIER1Q8N108 512 aa22.96■■□□□ 1.27
USH1C-204ENST00000526313 MPHOSPH9Q99550 1183 aa22.94■■□□□ 1.26
USH1C-204ENST00000526313 TRIM52Q96A61 297 aa22.93■■□□□ 1.26
USH1C-204ENST00000526313 TONSLQ96HA7 1378 aa22.93■■□□□ 1.26
USH1C-204ENST00000526313 SHANK2Q9UPX8 1470 aa22.92■■□□□ 1.26
USH1C-204ENST00000526313 KDM5BQ9UGL1 1544 aa22.91■■□□□ 1.26
USH1C-204ENST00000526313 UHRF1BP1LA0JNW5 1464 aa22.91■■□□□ 1.26
USH1C-204ENST00000526313 ZNF777Q9ULD5 760 aaPredicted RBP22.91■■□□□ 1.26
USH1C-204ENST00000526313 ARHGEF5Q12774 1597 aa22.89■■□□□ 1.25
USH1C-204ENST00000526313 PREX2Q70Z35 1606 aa22.88■■□□□ 1.25
USH1C-204ENST00000526313 ANKRD30AQ9BXX3 1397 aa22.88■■□□□ 1.25
USH1C-204ENST00000526313 CDC42BPBQ9Y5S2 1711 aa22.87■■□□□ 1.25
USH1C-204ENST00000526313 MBD5Q9P267 1494 aa22.86■■□□□ 1.25
USH1C-204ENST00000526313 ANKRD30BQ9BXX2 1392 aa22.84■■□□□ 1.25
USH1C-204ENST00000526313 C9orf84Q5VXU9 1444 aa22.83■■□□□ 1.24
USH1C-204ENST00000526313 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.82■■□□□ 1.24
USH1C-204ENST00000526313 SAMD9LQ8IVG5 1584 aa22.82■■□□□ 1.24
USH1C-204ENST00000526313 PZPP20742 1482 aa22.82■■□□□ 1.24
USH1C-204ENST00000526313 RSPH4AQ5TD94 716 aa22.8■■□□□ 1.24
USH1C-204ENST00000526313 TTC37Q6PGP7 1564 aa22.8■■□□□ 1.24
USH1C-204ENST00000526313 ZCCHC11Q5TAX3 1644 aaKnown RBP22.79■■□□□ 1.24
USH1C-204ENST00000526313 ANKRD50Q9ULJ7 1429 aa22.79■■□□□ 1.24
USH1C-204ENST00000526313 RPRD2Q5VT52 1461 aaKnown RBP22.77■■□□□ 1.24
USH1C-204ENST00000526313 TSPY4P0CV99 314 aa22.76■■□□□ 1.23
USH1C-204ENST00000526313 TSPY10P0CW01 314 aa22.76■■□□□ 1.23
USH1C-204ENST00000526313 SLC4A1APQ9BWU0 796 aaKnown RBP22.76■■□□□ 1.23
USH1C-204ENST00000526313 CCDC141Q6ZP82 1450 aa22.76■■□□□ 1.23
USH1C-204ENST00000526313 HNRNPMP52272 730 aaKnown RBP eCLIP22.76■■□□□ 1.23
USH1C-204ENST00000526313 CENPBP07199 599 aaPredicted RBP22.74■■□□□ 1.23
USH1C-204ENST00000526313 FOXD1Q16676 465 aa22.74■■□□□ 1.23
USH1C-204ENST00000526313 MYO5CQ9NQX4 1742 aa22.74■■□□□ 1.23
USH1C-204ENST00000526313 KIAA1107Q9UPP5 1409 aa22.73■■□□□ 1.23
USH1C-204ENST00000526313 MAST1Q9Y2H9 1570 aa22.72■■□□□ 1.23
USH1C-204ENST00000526313 KDM5DQ9BY66 1539 aa22.71■■□□□ 1.23
USH1C-204ENST00000526313 ARHGAP5Q13017 1502 aa22.71■■□□□ 1.23
USH1C-204ENST00000526313 PLEKHH2Q8IVE3 1493 aa22.71■■□□□ 1.23
USH1C-204ENST00000526313 PLCH2O75038 1416 aa22.69■■□□□ 1.22
USH1C-204ENST00000526313 KIF15Q9NS87 1388 aa22.69■■□□□ 1.22
USH1C-204ENST00000526313 TEX14Q8IWB6 1497 aa22.68■■□□□ 1.22
USH1C-204ENST00000526313 L3MBTL2Q969R5 705 aa22.68■■□□□ 1.22
USH1C-204ENST00000526313 SYCP2Q9BX26 1530 aa22.68■■□□□ 1.22
USH1C-204ENST00000526313 KCNH8Q96L42 1107 aa22.64■■□□□ 1.21
USH1C-204ENST00000526313 SCAF1Q9H7N4 1312 aaKnown RBP22.63■■□□□ 1.21
USH1C-204ENST00000526313 ARAP3Q8WWN8 1544 aa22.62■■□□□ 1.21
USH1C-204ENST00000526313 NUP155O75694 1391 aa22.62■■□□□ 1.21
USH1C-204ENST00000526313 PKD2Q13563 968 aa22.61■■□□□ 1.21
USH1C-204ENST00000526313 ARHGEF12Q9NZN5 1544 aa22.61■■□□□ 1.21
USH1C-204ENST00000526313 PLXNC1O60486 1568 aa22.61■■□□□ 1.21
USH1C-204ENST00000526313 DDX10Q13206 875 aaKnown RBP22.59■■□□□ 1.21
USH1C-204ENST00000526313 EFCAB2Q5VUJ9 269 aa22.59■■□□□ 1.21
USH1C-204ENST00000526313 HIRIP3Q9BW71 556 aaPredicted RBP22.59■■□□□ 1.21
USH1C-204ENST00000526313 WDR7Q9Y4E6 1490 aa22.57■■□□□ 1.2
USH1C-204ENST00000526313 OSCARQ8IYS5 282 aa22.57■■□□□ 1.2
USH1C-204ENST00000526313 ABCC1P33527 1531 aa22.56■■□□□ 1.2
USH1C-204ENST00000526313 YTHDC1Q96MU7 727 aaKnown RBP22.55■■□□□ 1.2
USH1C-204ENST00000526313 UNC13BO14795 1591 aa22.54■■□□□ 1.2
USH1C-204ENST00000526313 NBPF8Q3BBV2 869 aa22.54■■□□□ 1.2
USH1C-204ENST00000526313 HSPA5P11021 654 aaKnown RBP22.51■■□□□ 1.19
USH1C-204ENST00000526313 DUOX2Q9NRD8 1548 aa22.51■■□□□ 1.19
USH1C-204ENST00000526313 FAM135AQ9P2D6 1515 aa22.51■■□□□ 1.19
USH1C-204ENST00000526313 EIF4G2P78344 907 aaKnown RBP eCLIP22.5■■□□□ 1.19
USH1C-204ENST00000526313 ABCA9Q8IUA7 1624 aa22.5■■□□□ 1.19
USH1C-204ENST00000526313 TRAPPC8Q9Y2L5 1435 aa22.48■■□□□ 1.19
USH1C-204ENST00000526313 ERBINQ96RT1 1412 aa22.47■■□□□ 1.19
USH1C-204ENST00000526313 MAGI2Q86UL8 1455 aa22.46■■□□□ 1.19
USH1C-204ENST00000526313 RTEL1-TNFRSF6BF6WH68 1400 aa22.46■■□□□ 1.19
USH1C-204ENST00000526313 SPATA31E1Q6ZUB1 1445 aa22.46■■□□□ 1.19
USH1C-204ENST00000526313 ASXL2Q76L83 1435 aa22.45■■□□□ 1.18
USH1C-204ENST00000526313 IQGAP3Q86VI3 1631 aa22.44■■□□□ 1.18
USH1C-204ENST00000526313 UHRF1BP1Q6BDS2 1440 aa22.44■■□□□ 1.18
USH1C-204ENST00000526313 WASHC2AQ641Q2 1341 aa22.42■■□□□ 1.18
USH1C-204ENST00000526313 FANCAO15360 1455 aa22.4■■□□□ 1.18
USH1C-204ENST00000526313 CCER2I3L3R5 266 aa22.39■■□□□ 1.17
USH1C-204ENST00000526313 ZFYVE16Q7Z3T8 1539 aa22.38■■□□□ 1.17
USH1C-204ENST00000526313 SPAG9O60271 1321 aaKnown RBP22.37■■□□□ 1.17
USH1C-204ENST00000526313 PLA2R1Q13018 1463 aa22.37■■□□□ 1.17
USH1C-204ENST00000526313 GTF3C3Q9Y5Q9 886 aa22.37■■□□□ 1.17
USH1C-204ENST00000526313 ATP10AO60312 1499 aa22.36■■□□□ 1.17
USH1C-204ENST00000526313 ANP32CO43423 234 aa22.36■■□□□ 1.17
USH1C-204ENST00000526313 AFAP1Q8N556 730 aa22.36■■□□□ 1.17
USH1C-204ENST00000526313 INO80Q9ULG1 1556 aaPredicted RBP22.33■■□□□ 1.17
USH1C-204ENST00000526313 CCDC7Q96M83 1385 aa22.33■■□□□ 1.17
USH1C-204ENST00000526313 RALGAPBQ86X10 1494 aa22.33■■□□□ 1.16
USH1C-204ENST00000526313 C11orf95C9JLR9 678 aaPredicted RBP22.33■■□□□ 1.16
USH1C-204ENST00000526313 POLR1AO95602 1720 aaPredicted RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms