RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 U2SURPO15042 1029 aaKnown RBP21.03■□□□□ 0.96
USP42-207ENST00000521713 STK26Q9P289 416 aa21.02■□□□□ 0.96
USP42-207ENST00000521713 RAB3GAP2Q9H2M9 1393 aa21.02■□□□□ 0.96
USP42-207ENST00000521713 SAFB2Q14151 953 aaKnown RBP eCLIP21.02■□□□□ 0.96
USP42-207ENST00000521713 HDGFL2Q7Z4V5 671 aaPredicted RBP21.02■□□□□ 0.95
USP42-207ENST00000521713 ARXQ96QS3 562 aa21.01■□□□□ 0.95
USP42-207ENST00000521713 EID1Q9Y6B2 187 aa21■□□□□ 0.95
USP42-207ENST00000521713 FOXD1Q16676 465 aa21■□□□□ 0.95
USP42-207ENST00000521713 IGF1RP08069 1367 aa21■□□□□ 0.95
USP42-207ENST00000521713 MORC1Q86VD1 984 aa20.99■□□□□ 0.95
USP42-207ENST00000521713 LAS1LQ9Y4W2 734 aaKnown RBP20.98■□□□□ 0.95
USP42-207ENST00000521713 FTSJ3Q8IY81 847 aaKnown RBP20.98■□□□□ 0.95
USP42-207ENST00000521713 CHMP4BQ9H444 224 aaKnown RBP20.96■□□□□ 0.95
USP42-207ENST00000521713 NOP58Q9Y2X3 529 aaKnown RBP20.95■□□□□ 0.94
USP42-207ENST00000521713 HSPA5P11021 654 aaKnown RBP20.94■□□□□ 0.94
USP42-207ENST00000521713 IRX6P78412 446 aaPredicted RBP20.94■□□□□ 0.94
USP42-207ENST00000521713 ROCK2O75116 1388 aaKnown RBP20.94■□□□□ 0.94
USP42-207ENST00000521713 PPP4R2Q9NY27 417 aa20.94■□□□□ 0.94
USP42-207ENST00000521713 RAD54L2Q9Y4B4 1467 aa20.94■□□□□ 0.94
USP42-207ENST00000521713 SUPT16HQ9Y5B9 1047 aaKnown RBP20.94■□□□□ 0.94
USP42-207ENST00000521713 GOLGA6L22H0YM25 854 aa20.93■□□□□ 0.94
USP42-207ENST00000521713 MS4A1P11836 297 aa20.93■□□□□ 0.94
USP42-207ENST00000521713 EIF3AQ14152 1382 aaKnown RBP20.93■□□□□ 0.94
USP42-207ENST00000521713 RUSC2Q8N2Y8 1516 aa20.91■□□□□ 0.94
USP42-207ENST00000521713 SOX12O15370 315 aa20.9■□□□□ 0.94
USP42-207ENST00000521713 AQRO60306 1485 aaKnown RBP eCLIP20.85■□□□□ 0.933e-6■■■□□ 17.1
USP42-207ENST00000521713 KTN1Q86UP2 1357 aaKnown RBP20.85■□□□□ 0.93
USP42-207ENST00000521713 SENP3-EIF4A1A0A087X0R7 540 aa20.85■□□□□ 0.93
USP42-207ENST00000521713 GRIN2BQ13224 1484 aa20.84■□□□□ 0.93
USP42-207ENST00000521713 NPHP1O15259 732 aa20.83■□□□□ 0.93
USP42-207ENST00000521713 PAK3O75914 559 aaPredicted RBP20.83■□□□□ 0.93
USP42-207ENST00000521713 CFTRP13569 1480 aa20.83■□□□□ 0.93
USP42-207ENST00000521713 TERF2IPQ9NYB0 399 aa20.83■□□□□ 0.92
USP42-207ENST00000521713 RTF1Q92541 710 aaKnown RBP20.82■□□□□ 0.92
USP42-207ENST00000521713 L3MBTL2Q969R5 705 aa20.82■□□□□ 0.92
USP42-207ENST00000521713 CCER2I3L3R5 266 aa20.81■□□□□ 0.92
USP42-207ENST00000521713 FRAT1Q92837 279 aaPredicted RBP20.81■□□□□ 0.92
USP42-207ENST00000521713 NCLP19338 710 aaKnown RBP20.8■□□□□ 0.92
USP42-207ENST00000521713 CASC1Q6TDU7 716 aa20.8■□□□□ 0.92
USP42-207ENST00000521713 NAP1L5Q96NT1 182 aaPredicted RBP20.79■□□□□ 0.92
USP42-207ENST00000521713 UACAQ9BZF9 1416 aa20.79■□□□□ 0.92
USP42-207ENST00000521713 FAM69CQ0P6D2 419 aa20.78■□□□□ 0.92
USP42-207ENST00000521713 RALBP1Q15311 655 aa20.78■□□□□ 0.92
USP42-207ENST00000521713 CCDC144AA2RUR9 1427 aa20.77■□□□□ 0.92
USP42-207ENST00000521713 DEKP35659 375 aaKnown RBP20.77■□□□□ 0.92
USP42-207ENST00000521713 MRC2Q9UBG0 1479 aa20.77■□□□□ 0.92
USP42-207ENST00000521713 VGFO15240 615 aaPredicted RBP20.77■□□□□ 0.91
USP42-207ENST00000521713 CSB-PGBD3P0DP91 1061 aa20.76■□□□□ 0.91
USP42-207ENST00000521713 CALD1Q05682 793 aaKnown RBP20.76■□□□□ 0.91
USP42-207ENST00000521713 MYOM3Q5VTT5 1437 aa20.74■□□□□ 0.91
USP42-207ENST00000521713 HMGXB3Q12766 1538 aa20.74■□□□□ 0.91
USP42-207ENST00000521713 NGDNQ8NEJ9 315 aaKnown RBP20.73■□□□□ 0.91
USP42-207ENST00000521713 CHMP4AQ9BY43 222 aa20.73■□□□□ 0.91
USP42-207ENST00000521713 IFT140Q96RY7 1462 aa20.72■□□□□ 0.91
USP42-207ENST00000521713 U2AF1L5P0DN76 240 aaPredicted RBP20.72■□□□□ 0.91
USP42-207ENST00000521713 U2AF1Q01081 240 aaKnown RBP eCLIP20.72■□□□□ 0.91
USP42-207ENST00000521713 CC2D2AQ9P2K1 1620 aa20.72■□□□□ 0.91
USP42-207ENST00000521713 OS9Q13438 667 aaPredicted RBP20.71■□□□□ 0.91
USP42-207ENST00000521713 NUTM2DQ5VT03 806 aaPredicted RBP20.71■□□□□ 0.91
USP42-207ENST00000521713 L1TD1Q5T7N2 865 aaKnown RBP20.7■□□□□ 0.91
USP42-207ENST00000521713 RBM19Q9Y4C8 960 aaKnown RBP20.7■□□□□ 0.9
USP42-207ENST00000521713 PTMAP06454 111 aaKnown RBP20.68■□□□□ 0.9
USP42-207ENST00000521713 TRAK1Q9UPV9 953 aa20.67■□□□□ 0.9
USP42-207ENST00000521713 RTN4Q9NQC3 1192 aaKnown RBP20.67■□□□□ 0.9
USP42-207ENST00000521713 NESP48681 1621 aa20.66■□□□□ 0.9
USP42-207ENST00000521713 IPO8O15397 1037 aaKnown RBP20.64■□□□□ 0.89
USP42-207ENST00000521713 DNTTIP2Q5QJE6 756 aaKnown RBP20.62■□□□□ 0.89
USP42-207ENST00000521713 GOLGA2Q08379 1002 aa20.62■□□□□ 0.89
USP42-207ENST00000521713 CUX1P39880 1505 aa20.61■□□□□ 0.89
USP42-207ENST00000521713 PRG4Q92954 1404 aaPredicted RBP20.61■□□□□ 0.89
USP42-207ENST00000521713 STAC3Q96MF2 364 aa20.61■□□□□ 0.89
USP42-207ENST00000521713 SYNJ2O15056 1496 aa20.59■□□□□ 0.89
USP42-207ENST00000521713 TOPBP1Q92547 1522 aa20.59■□□□□ 0.89
USP42-207ENST00000521713 CASKIN1Q8WXD9 1431 aa20.59■□□□□ 0.89
USP42-207ENST00000521713 AMPHP49418 695 aa20.59■□□□□ 0.89
USP42-207ENST00000521713 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.59■□□□□ 0.89
USP42-207ENST00000521713 KIF15Q9NS87 1388 aa20.58■□□□□ 0.89
USP42-207ENST00000521713 NLRP13Q86W25 1043 aa20.58■□□□□ 0.89
USP42-207ENST00000521713 FGD6Q6ZV73 1430 aa20.58■□□□□ 0.89
USP42-207ENST00000521713 CDK11BP21127 795 aaKnown RBP20.57■□□□□ 0.88
USP42-207ENST00000521713 EVC2Q86UK5 1308 aa20.57■□□□□ 0.88
USP42-207ENST00000521713 CCDC9Q9Y3X0 531 aaKnown RBP20.57■□□□□ 0.88
USP42-207ENST00000521713 RGS3P49796 1198 aa20.56■□□□□ 0.88
USP42-207ENST00000521713 ST20-MTHFSA0A0A6YYL1 179 aa20.55■□□□□ 0.88
USP42-207ENST00000521713 LMOD3Q0VAK6 560 aa20.55■□□□□ 0.88
USP42-207ENST00000521713 ERICH3Q5RHP9 1530 aa20.55■□□□□ 0.88
USP42-207ENST00000521713 NUTM2FA1L443 756 aa20.54■□□□□ 0.88
USP42-207ENST00000521713 DHX57Q6P158 1386 aaKnown RBP20.54■□□□□ 0.88
USP42-207ENST00000521713 POLA1P09884 1462 aaPredicted RBP20.53■□□□□ 0.88
USP42-207ENST00000521713 ZNF644Q9H582 1327 aaPredicted RBP20.52■□□□□ 0.88
USP42-207ENST00000521713 FYCO1Q9BQS8 1478 aa20.52■□□□□ 0.88
USP42-207ENST00000521713 STK31Q9BXU1 1019 aa20.52■□□□□ 0.88
USP42-207ENST00000521713 PHLDB1Q86UU1 1377 aa20.52■□□□□ 0.88
USP42-207ENST00000521713 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.52■□□□□ 0.87
USP42-207ENST00000521713 KCNJ4P48050 445 aa20.51■□□□□ 0.87
USP42-207ENST00000521713 CFAP44Q96MT7 982 aa20.51■□□□□ 0.87
USP42-207ENST00000521713 HDAC5Q9UQL6 1122 aa20.51■□□□□ 0.87
USP42-207ENST00000521713 TSHZ2Q9NRE2 1034 aa20.5■□□□□ 0.87
USP42-207ENST00000521713 PRDM2Q13029 1718 aa20.5■□□□□ 0.87
USP42-207ENST00000521713 LRRC9Q6ZRR7 1453 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms