RNA–Protein interactions for RNA: ENST00000520337.1

CTHRC1-203, Transcript of collagen triple helix repeat containing 1, humanhuman

TSL 1 (best) BASIC

Gene CTHRC1, Length 1,198 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-203ENST00000520337 TOP2AP11388 1531 aaKnown RBP13.69□□□□□ -0.22
CTHRC1-203ENST00000520337 C3orf67Q6ZVT6 689 aa13.68□□□□□ -0.22
CTHRC1-203ENST00000520337 RGL2O15211 777 aa13.67□□□□□ -0.22
CTHRC1-203ENST00000520337 BCL11BQ9C0K0 894 aaPredicted RBP13.67□□□□□ -0.22
CTHRC1-203ENST00000520337 G3V3G9 751 aa13.65□□□□□ -0.22
CTHRC1-203ENST00000520337 STK25O00506 426 aa13.63□□□□□ -0.23
CTHRC1-203ENST00000520337 DPY19L2Q6NUT2 758 aa13.63□□□□□ -0.23
CTHRC1-203ENST00000520337 BOLA1Q9Y3E2 137 aa13.63□□□□□ -0.23
CTHRC1-203ENST00000520337 STK24Q9Y6E0 443 aa13.63□□□□□ -0.23
CTHRC1-203ENST00000520337 CC2D2AQ9P2K1 1620 aa13.63□□□□□ -0.23
CTHRC1-203ENST00000520337 NCAPD3P42695 1498 aa13.62□□□□□ -0.23
CTHRC1-203ENST00000520337 BAZ1BQ9UIG0 1483 aaKnown RBP13.6□□□□□ -0.23
CTHRC1-203ENST00000520337 HMGXB3Q12766 1538 aa13.59□□□□□ -0.23
CTHRC1-203ENST00000520337 TMEM121BQ9BXQ6 578 aaPredicted RBP13.58□□□□□ -0.24
CTHRC1-203ENST00000520337 SNPHO15079 494 aa13.56□□□□□ -0.24
CTHRC1-203ENST00000520337 NLRP6P59044 892 aa13.56□□□□□ -0.24
CTHRC1-203ENST00000520337 MMRN1Q13201 1228 aa13.56□□□□□ -0.24
CTHRC1-203ENST00000520337 SPNS2Q8IVW8 549 aa13.56□□□□□ -0.24
CTHRC1-203ENST00000520337 PHF8Q9UPP1 1060 aa13.56□□□□□ -0.24
CTHRC1-203ENST00000520337 CCDC88BA6NC98 1476 aa13.55□□□□□ -0.24
CTHRC1-203ENST00000520337 MS4A4AQ96JQ5 239 aa13.53□□□□□ -0.24
CTHRC1-203ENST00000520337 MARVELD3Q96A59 401 aa13.51□□□□□ -0.25
CTHRC1-203ENST00000520337 FBXO22Q8NEZ5 403 aa13.5□□□□□ -0.25
CTHRC1-203ENST00000520337 MICALL2Q8IY33 904 aa13.48□□□□□ -0.25
CTHRC1-203ENST00000520337 MFRPQ9BY79 579 aa13.48□□□□□ -0.25
CTHRC1-203ENST00000520337 HS6ST3Q8IZP7 471 aa13.46□□□□□ -0.25
CTHRC1-203ENST00000520337 POTEB3A0JP26 581 aa13.39□□□□□ -0.27
CTHRC1-203ENST00000520337 POTEBQ6S5H4 581 aa13.39□□□□□ -0.27
CTHRC1-203ENST00000520337 CHGAP10645 457 aaKnown RBP13.37□□□□□ -0.27
CTHRC1-203ENST00000520337 DNAJC5Q9H3Z4 198 aa13.36□□□□□ -0.27
CTHRC1-203ENST00000520337 KRTAP3-3Q9BYR6 98 aa13.33□□□□□ -0.28
CTHRC1-203ENST00000520337 KRTAP3-2Q9BYR7 98 aa13.33□□□□□ -0.28
CTHRC1-203ENST00000520337 TMEM92Q6UXU6 159 aa13.32□□□□□ -0.28
CTHRC1-203ENST00000520337 EMP3P54852 163 aa13.31□□□□□ -0.28
CTHRC1-203ENST00000520337 DOK7Q18PE1 504 aa13.31□□□□□ -0.28
CTHRC1-203ENST00000520337 HOXB3P14651 431 aaPredicted RBP13.29□□□□□ -0.28
CTHRC1-203ENST00000520337 HS3ST6Q96QI5 342 aa13.29□□□□□ -0.28
CTHRC1-203ENST00000520337 PRDM2Q13029 1718 aa13.28□□□□□ -0.28
CTHRC1-203ENST00000520337 RYDENQ9NUL5 291 aaKnown RBP13.28□□□□□ -0.28
CTHRC1-203ENST00000520337 CFTRP13569 1480 aa13.28□□□□□ -0.28
CTHRC1-203ENST00000520337 FAM205CA6NFA0 338 aa13.27□□□□□ -0.29
CTHRC1-203ENST00000520337 RIMBP2O15034 1052 aa13.27□□□□□ -0.29
CTHRC1-203ENST00000520337 ZNF710Q8N1W2 664 aa13.26□□□□□ -0.29
CTHRC1-203ENST00000520337 CADPSQ9ULU8 1353 aa13.24□□□□□ -0.29
CTHRC1-203ENST00000520337 PPP1R37O75864 691 aa13.22□□□□□ -0.29
CTHRC1-203ENST00000520337 ZSWIM6Q9HCJ5 1215 aa13.22□□□□□ -0.29
CTHRC1-203ENST00000520337 ABCC8Q09428 1581 aa13.22□□□□□ -0.29
CTHRC1-203ENST00000520337 KIF3CO14782 793 aa13.21□□□□□ -0.29
CTHRC1-203ENST00000520337 NKX1-1Q15270 411 aaPredicted RBP13.21□□□□□ -0.29
CTHRC1-203ENST00000520337 HOXB1P14653 301 aaPredicted RBP13.2□□□□□ -0.3
CTHRC1-203ENST00000520337 NESP48681 1621 aa13.18□□□□□ -0.3
CTHRC1-203ENST00000520337 AMER1Q5JTC6 1135 aaPredicted RBP13.18□□□□□ -0.3
CTHRC1-203ENST00000520337 LAMC3Q9Y6N6 1575 aa13.17□□□□□ -0.3
CTHRC1-203ENST00000520337 C2orf72A6NCS6 295 aa13.17□□□□□ -0.3
CTHRC1-203ENST00000520337 TMC2Q8TDI7 906 aa13.17□□□□□ -0.3
CTHRC1-203ENST00000520337 WRNQ14191 1432 aaPredicted RBP eCLIP13.13□□□□□ -0.31
CTHRC1-203ENST00000520337 SYNJ1O43426 1573 aa13.11□□□□□ -0.31
CTHRC1-203ENST00000520337 GPR153Q6NV75 609 aa13.09□□□□□ -0.31
CTHRC1-203ENST00000520337 FANCD2Q9BXW9 1451 aa13.09□□□□□ -0.31
CTHRC1-203ENST00000520337 TOP2BQ02880 1626 aa13.07□□□□□ -0.32
CTHRC1-203ENST00000520337 BIVM-ERCC5R4GMW8 1640 aa13.07□□□□□ -0.32
CTHRC1-203ENST00000520337 SLC34A2O95436 690 aa13.07□□□□□ -0.32
CTHRC1-203ENST00000520337 CUX1P39880 1505 aa13.07□□□□□ -0.32
CTHRC1-203ENST00000520337 KIF21AQ7Z4S6 1674 aa13.06□□□□□ -0.32
CTHRC1-203ENST00000520337 GTPBP6O43824 516 aaPredicted RBP13.06□□□□□ -0.32
CTHRC1-203ENST00000520337 GPHNQ9NQX3 736 aaPredicted RBP13.05□□□□□ -0.32
CTHRC1-203ENST00000520337 FOXK1P85037 733 aa13.04□□□□□ -0.32
CTHRC1-203ENST00000520337 ERBB3P21860 1342 aa13.04□□□□□ -0.32
CTHRC1-203ENST00000520337 PDS5BQ9NTI5 1447 aa13.04□□□□□ -0.32
CTHRC1-203ENST00000520337 ARSIQ5FYB1 569 aa13.02□□□□□ -0.33
CTHRC1-203ENST00000520337 CEP164Q9UPV0 1460 aa13.01□□□□□ -0.33
CTHRC1-203ENST00000520337 RTN4Q9NQC3 1192 aaKnown RBP13□□□□□ -0.33
CTHRC1-203ENST00000520337 VARS2Q5ST30 1063 aaKnown RBP12.97□□□□□ -0.33
CTHRC1-203ENST00000520337 DNMBPQ6XZF7 1577 aa12.97□□□□□ -0.33
CTHRC1-203ENST00000520337 PLPP6Q8IY26 295 aa12.96□□□□□ -0.33
CTHRC1-203ENST00000520337 CRISPLD2Q9H0B8 497 aa12.96□□□□□ -0.33
CTHRC1-203ENST00000520337 PCDHGA4Q9Y5G9 962 aa12.96□□□□□ -0.33
CTHRC1-203ENST00000520337 URB2Q14146 1524 aaKnown RBP12.96□□□□□ -0.33
CTHRC1-203ENST00000520337 TOPBP1Q92547 1522 aa12.95□□□□□ -0.34
CTHRC1-203ENST00000520337 DSG2Q14126 1118 aa12.95□□□□□ -0.34
CTHRC1-203ENST00000520337 BBXQ8WY36 941 aaPredicted RBP12.95□□□□□ -0.34
CTHRC1-203ENST00000520337 ZNF316A6NFI3 1004 aaPredicted RBP12.94□□□□□ -0.34
CTHRC1-203ENST00000520337 SOGA1O94964 1423 aa12.94□□□□□ -0.34
CTHRC1-203ENST00000520337 PDE4AP27815 886 aa12.93□□□□□ -0.34
CTHRC1-203ENST00000520337 PTCD2Q8WV60 388 aaKnown RBP12.93□□□□□ -0.34
CTHRC1-203ENST00000520337 KHSRPQ92945 711 aaKnown RBP eCLIP12.92□□□□□ -0.34
CTHRC1-203ENST00000520337 RUSC2Q8N2Y8 1516 aa12.92□□□□□ -0.34
CTHRC1-203ENST00000520337 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
CTHRC1-203ENST00000520337 NUDT7P0C024 238 aa12.91□□□□□ -0.34
CTHRC1-203ENST00000520337 ZNF687Q8N1G0 1237 aa12.91□□□□□ -0.34
CTHRC1-203ENST00000520337 FAM9AQ8IZU1 332 aaPredicted RBP12.9□□□□□ -0.34
CTHRC1-203ENST00000520337 RNF166Q96A37 237 aaPredicted RBP12.9□□□□□ -0.34
CTHRC1-203ENST00000520337 MRC2Q9UBG0 1479 aa12.9□□□□□ -0.34
CTHRC1-203ENST00000520337 NCKAP5LQ9HCH0 1330 aa12.88□□□□□ -0.35
CTHRC1-203ENST00000520337 TBC1D12O60347 775 aa12.88□□□□□ -0.35
CTHRC1-203ENST00000520337 POLA1P09884 1462 aaPredicted RBP12.87□□□□□ -0.35
CTHRC1-203ENST00000520337 PPP1R15BQ5SWA1 713 aa12.87□□□□□ -0.35
CTHRC1-203ENST00000520337 EEA1Q15075 1411 aa12.87□□□□□ -0.35
CTHRC1-203ENST00000520337 THOC2Q8NI27 1593 aaKnown RBP12.86□□□□□ -0.35
CTHRC1-203ENST00000520337 ERCC6Q03468 1493 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms