RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ZNF772Q68DY9 489 aaPredicted RBP5.11□□□□□ -1.59
MCF2-208ENST00000519895 WDR7Q9Y4E6 1490 aa5.11□□□□□ -1.59
MCF2-208ENST00000519895 AATKQ6ZMQ8 1374 aa5.11□□□□□ -1.59
MCF2-208ENST00000519895 ZNF142P52746 1687 aaPredicted RBP5.11□□□□□ -1.59
MCF2-208ENST00000519895 NWD1Q149M9 1564 aa5.11□□□□□ -1.59
MCF2-208ENST00000519895 TDRD9Q8NDG6 1382 aaKnown RBP5.11□□□□□ -1.59
MCF2-208ENST00000519895 RUSC2Q8N2Y8 1516 aa5.1□□□□□ -1.59
MCF2-208ENST00000519895 PKD2Q13563 968 aa5.1□□□□□ -1.59
MCF2-208ENST00000519895 SLC24A1O60721 1099 aa5.09□□□□□ -1.59
MCF2-208ENST00000519895 ATAD2Q6PL18 1390 aa5.09□□□□□ -1.59
MCF2-208ENST00000519895 CDK13Q14004 1512 aaKnown RBP5.09□□□□□ -1.59
MCF2-208ENST00000519895 FRMPD1Q5SYB0 1578 aa5.09□□□□□ -1.59
MCF2-208ENST00000519895 TCOF1Q13428 1488 aaKnown RBP5.09□□□□□ -1.59
MCF2-208ENST00000519895 ZMYM4Q5VZL5 1548 aa5.08□□□□□ -1.6
MCF2-208ENST00000519895 RAD54L2Q9Y4B4 1467 aa5.07□□□□□ -1.6
MCF2-208ENST00000519895 NEO1Q92859 1461 aa5.07□□□□□ -1.6
MCF2-208ENST00000519895 CAMSAP1Q5T5Y3 1602 aa5.06□□□□□ -1.6
MCF2-208ENST00000519895 MAGI2Q86UL8 1455 aa5.06□□□□□ -1.6
MCF2-208ENST00000519895 FHAD1B1AJZ9 1412 aa5.06□□□□□ -1.6
MCF2-208ENST00000519895 HOXD11P31277 338 aaPredicted RBP5.06□□□□□ -1.6
MCF2-208ENST00000519895 CD109Q6YHK3 1445 aa5.06□□□□□ -1.6
MCF2-208ENST00000519895 EFCAB5A4FU69 1503 aa5.06□□□□□ -1.6
MCF2-208ENST00000519895 ZNF335Q9H4Z2 1342 aaPredicted RBP5.06□□□□□ -1.6
MCF2-208ENST00000519895 BCL9LQ86UU0 1499 aa5.05□□□□□ -1.6
MCF2-208ENST00000519895 ZNF784Q8NCA9 323 aaPredicted RBP5.05□□□□□ -1.6
MCF2-208ENST00000519895 FAM135BQ49AJ0 1406 aa5.05□□□□□ -1.6
MCF2-208ENST00000519895 CHD4Q14839 1912 aa5.05□□□□□ -1.6
MCF2-208ENST00000519895 AKNAQ7Z591 1439 aa5.05□□□□□ -1.6
MCF2-208ENST00000519895 DCAF8L1A6NGE4 600 aa5.05□□□□□ -1.6
MCF2-208ENST00000519895 JPH4Q96JJ6 628 aa5.05□□□□□ -1.6
MCF2-208ENST00000519895 SHANK2Q9UPX8 1470 aa5.04□□□□□ -1.6
MCF2-208ENST00000519895 RAPGEF2Q9Y4G8 1499 aa5.04□□□□□ -1.6
MCF2-208ENST00000519895 PITPNM2Q9BZ72 1349 aa5.04□□□□□ -1.6
MCF2-208ENST00000519895 ZCCHC11Q5TAX3 1644 aaKnown RBP5.04□□□□□ -1.6
MCF2-208ENST00000519895 PIP4K2BP78356 416 aa5.04□□□□□ -1.6
MCF2-208ENST00000519895 ABCA10Q8WWZ4 1543 aa5.04□□□□□ -1.6
MCF2-208ENST00000519895 KIAA1210Q9ULL0 1709 aa5.04□□□□□ -1.6
MCF2-208ENST00000519895 RXRBP28702 533 aa5.03□□□□□ -1.6
MCF2-208ENST00000519895 NPATQ14207 1427 aa5.03□□□□□ -1.6
MCF2-208ENST00000519895 XIRP1Q702N8 1843 aaKnown RBP5.03□□□□□ -1.6
MCF2-208ENST00000519895 C3P01024 1663 aa5.02□□□□□ -1.61
MCF2-208ENST00000519895 TRAPPC8Q9Y2L5 1435 aa5.02□□□□□ -1.61
MCF2-208ENST00000519895 MAPK8IP2Q13387 824 aaPredicted RBP5.02□□□□□ -1.61
MCF2-208ENST00000519895 RICTORQ6R327 1708 aa5.02□□□□□ -1.61
MCF2-208ENST00000519895 VWDEQ8N2E2 1590 aa5.02□□□□□ -1.61
MCF2-208ENST00000519895 ERICH3Q5RHP9 1530 aa5.01□□□□□ -1.61
MCF2-208ENST00000519895 POLR1AO95602 1720 aaPredicted RBP5.01□□□□□ -1.61
MCF2-208ENST00000519895 NINLQ9Y2I6 1382 aa5.01□□□□□ -1.61
MCF2-208ENST00000519895 MROH2AA6NES4 1674 aa5.01□□□□□ -1.61
MCF2-208ENST00000519895 SHPRHQ149N8 1683 aa5□□□□□ -1.61
MCF2-208ENST00000519895 FGD6Q6ZV73 1430 aa5□□□□□ -1.61
MCF2-208ENST00000519895 FGD5Q6ZNL6 1462 aa5□□□□□ -1.61
MCF2-208ENST00000519895 LRRC9Q6ZRR7 1453 aa5□□□□□ -1.61
MCF2-208ENST00000519895 RGS12O14924 1447 aa5□□□□□ -1.61
MCF2-208ENST00000519895 ABCA8O94911 1581 aa4.99□□□□□ -1.61
MCF2-208ENST00000519895 FHOD3Q2V2M9 1422 aa4.99□□□□□ -1.61
MCF2-208ENST00000519895 UNC13BO14795 1591 aa4.99□□□□□ -1.61
MCF2-208ENST00000519895 SIGLEC1Q9BZZ2 1709 aa4.99□□□□□ -1.61
MCF2-208ENST00000519895 TNS4Q8IZW8 715 aa4.99□□□□□ -1.61
MCF2-208ENST00000519895 ARID4BQ4LE39 1312 aaPredicted RBP4.99□□□□□ -1.61
MCF2-208ENST00000519895 SPATA31A6Q5VVP1 1343 aa4.99□□□□□ -1.61
MCF2-208ENST00000519895 KIF14Q15058 1648 aa4.99□□□□□ -1.61
MCF2-208ENST00000519895 SUPT6HQ7KZ85 1726 aaKnown RBP4.99□□□□□ -1.61
MCF2-208ENST00000519895 WRNQ14191 1432 aaPredicted RBP eCLIP4.98□□□□□ -1.61
MCF2-208ENST00000519895 REREQ9P2R6 1566 aa4.98□□□□□ -1.61
MCF2-208ENST00000519895 JCADQ9P266 1359 aa4.98□□□□□ -1.61
MCF2-208ENST00000519895 CFAP74Q9C0B2 1584 aa4.98□□□□□ -1.61
MCF2-208ENST00000519895 PTPRGP23470 1445 aa4.97□□□□□ -1.61
MCF2-208ENST00000519895 SPHKAPQ2M3C7 1700 aa4.97□□□□□ -1.61
MCF2-208ENST00000519895 ZFYVE16Q7Z3T8 1539 aa4.97□□□□□ -1.61
MCF2-208ENST00000519895 EEA1Q15075 1411 aa4.97□□□□□ -1.61
MCF2-208ENST00000519895 UACAQ9BZF9 1416 aa4.97□□□□□ -1.61
MCF2-208ENST00000519895 ABCA9Q8IUA7 1624 aa4.97□□□□□ -1.61
MCF2-208ENST00000519895 AGLP35573 1532 aa4.96□□□□□ -1.61
MCF2-208ENST00000519895 GIGYF1O75420 1035 aaPredicted RBP4.96□□□□□ -1.62
MCF2-208ENST00000519895 TNS2Q63HR2 1409 aa4.96□□□□□ -1.62
MCF2-208ENST00000519895 TNIKQ9UKE5 1360 aa4.96□□□□□ -1.62
MCF2-208ENST00000519895 KCNA4P22459 653 aa4.95□□□□□ -1.62
MCF2-208ENST00000519895 RTEL1-TNFRSF6BF6WH68 1400 aa4.95□□□□□ -1.62
MCF2-208ENST00000519895 RAPGEF3O95398 923 aa4.95□□□□□ -1.62
MCF2-208ENST00000519895 TRIM52Q96A61 297 aa4.95□□□□□ -1.62
MCF2-208ENST00000519895 HRCP23327 699 aa4.95□□□□□ -1.62
MCF2-208ENST00000519895 CNTLNQ9NXG0 1405 aa4.94□□□□□ -1.62
MCF2-208ENST00000519895 DEPDC5O75140 1603 aa4.94□□□□□ -1.62
MCF2-208ENST00000519895 ARHGAP23Q9P227 1491 aa4.94□□□□□ -1.62
MCF2-208ENST00000519895 HSPA6P17066 643 aa4.94□□□□□ -1.62
MCF2-208ENST00000519895 BLMP54132 1417 aaPredicted RBP4.93□□□□□ -1.62
MCF2-208ENST00000519895 RALGAPBQ86X10 1494 aa4.93□□□□□ -1.62
MCF2-208ENST00000519895 KDM5DQ9BY66 1539 aa4.93□□□□□ -1.62
MCF2-208ENST00000519895 NEURL4Q96JN8 1562 aa4.93□□□□□ -1.62
MCF2-208ENST00000519895 RBM6P78332 1123 aaKnown RBP4.92□□□□□ -1.62
MCF2-208ENST00000519895 PHLPP1O60346 1717 aa4.92□□□□□ -1.62
MCF2-208ENST00000519895 SCAF11Q99590 1463 aaKnown RBP4.92□□□□□ -1.62
MCF2-208ENST00000519895 MYO3AQ8NEV4 1616 aa4.92□□□□□ -1.62
MCF2-208ENST00000519895 MED14O60244 1454 aa4.92□□□□□ -1.62
MCF2-208ENST00000519895 CAPN15O75808 1086 aa4.91□□□□□ -1.62
MCF2-208ENST00000519895 C9orf84Q5VXU9 1444 aa4.91□□□□□ -1.62
MCF2-208ENST00000519895 CSRNP3Q8WYN3 585 aa4.91□□□□□ -1.62
MCF2-208ENST00000519895 CEP170BQ9Y4F5 1589 aaPredicted RBP4.91□□□□□ -1.62
MCF2-208ENST00000519895 COL16A1Q07092 1604 aaPredicted RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms