RNA–Protein interactions for RNA: ENST00000519489.1

CTNNA1-216, Transcript of catenin alpha 1, humanhuman

TSL 2

Gene CTNNA1, Length 358 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-216ENST00000519489 ZNF219Q9P2Y4 722 aaPredicted RBP12.83□□□□□ -0.36
CTNNA1-216ENST00000519489 BIVM-ERCC5R4GMW8 1640 aa12.82□□□□□ -0.36
CTNNA1-216ENST00000519489 MYCNP04198 464 aaPredicted RBP12.82□□□□□ -0.36
CTNNA1-216ENST00000519489 SIGLEC1Q9BZZ2 1709 aa12.82□□□□□ -0.36
CTNNA1-216ENST00000519489 RGS17Q9UGC6 210 aaPredicted RBP12.78□□□□□ -0.36
CTNNA1-216ENST00000519489 MLECQ14165 292 aa12.77□□□□□ -0.37
CTNNA1-216ENST00000519489 SRCAPQ6ZRS2 3230 aa12.77□□□□□ -0.37
CTNNA1-216ENST00000519489 TTC37Q6PGP7 1564 aa12.74□□□□□ -0.37
CTNNA1-216ENST00000519489 ARHGEF40Q8TER5 1519 aa12.74□□□□□ -0.37
CTNNA1-216ENST00000519489 ZNF335Q9H4Z2 1342 aaPredicted RBP12.74□□□□□ -0.37
CTNNA1-216ENST00000519489 FOXD4L1Q9NU39 408 aa12.73□□□□□ -0.37
CTNNA1-216ENST00000519489 PHLDB1Q86UU1 1377 aa12.72□□□□□ -0.37
CTNNA1-216ENST00000519489 PREX1Q8TCU6 1659 aa12.71□□□□□ -0.37
CTNNA1-216ENST00000519489 IQGAP2Q13576 1575 aa12.7□□□□□ -0.38
CTNNA1-216ENST00000519489 NEO1Q92859 1461 aa12.68□□□□□ -0.38
CTNNA1-216ENST00000519489 UHRF1BP1Q6BDS2 1440 aa12.68□□□□□ -0.38
CTNNA1-216ENST00000519489 PIP4K2BP78356 416 aa12.67□□□□□ -0.38
CTNNA1-216ENST00000519489 POGZQ7Z3K3 1410 aa12.67□□□□□ -0.38
CTNNA1-216ENST00000519489 FANCAO15360 1455 aa12.66□□□□□ -0.38
CTNNA1-216ENST00000519489 NCOA1Q15788 1441 aa12.66□□□□□ -0.38
CTNNA1-216ENST00000519489 ABCB7O75027 752 aa12.66□□□□□ -0.38
CTNNA1-216ENST00000519489 ARHGEF12Q9NZN5 1544 aa12.66□□□□□ -0.38
CTNNA1-216ENST00000519489 CARMIL1Q5VZK9 1371 aa12.66□□□□□ -0.38
CTNNA1-216ENST00000519489 ARID3CA6NKF2 412 aa12.65□□□□□ -0.38
CTNNA1-216ENST00000519489 UGGT2Q9NYU1 1516 aa12.65□□□□□ -0.38
CTNNA1-216ENST00000519489 KIAA0556O60303 1618 aa12.65□□□□□ -0.38
CTNNA1-216ENST00000519489 ABCA8O94911 1581 aa12.64□□□□□ -0.39
CTNNA1-216ENST00000519489 AKNAQ7Z591 1439 aa12.64□□□□□ -0.39
CTNNA1-216ENST00000519489 FHOD3Q2V2M9 1422 aa12.63□□□□□ -0.39
CTNNA1-216ENST00000519489 FER1L4A9Z1Z3 1794 aa12.63□□□□□ -0.39
CTNNA1-216ENST00000519489 ABCA9Q8IUA7 1624 aa12.62□□□□□ -0.39
CTNNA1-216ENST00000519489 POTEAQ6S8J7 498 aa12.62□□□□□ -0.39
CTNNA1-216ENST00000519489 NCKAP5LQ9HCH0 1330 aa12.61□□□□□ -0.39
CTNNA1-216ENST00000519489 DENND4BO75064 1496 aaPredicted RBP12.6□□□□□ -0.39
CTNNA1-216ENST00000519489 RICTORQ6R327 1708 aa12.59□□□□□ -0.39
CTNNA1-216ENST00000519489 ATP10BO94823 1461 aa12.59□□□□□ -0.39
CTNNA1-216ENST00000519489 ALKQ9UM73 1620 aa12.58□□□□□ -0.4
CTNNA1-216ENST00000519489 ZFYVE16Q7Z3T8 1539 aa12.57□□□□□ -0.4
CTNNA1-216ENST00000519489 KIF27Q86VH2 1401 aa12.56□□□□□ -0.4
CTNNA1-216ENST00000519489 ZMYM4Q5VZL5 1548 aa12.56□□□□□ -0.4
CTNNA1-216ENST00000519489 ZBTB22O15209 634 aa12.51□□□□□ -0.41
CTNNA1-216ENST00000519489 CAMSAP1Q5T5Y3 1602 aa12.51□□□□□ -0.41
CTNNA1-216ENST00000519489 TOM1O60784 492 aa12.5□□□□□ -0.41
CTNNA1-216ENST00000519489 EFCAB5A4FU69 1503 aa12.5□□□□□ -0.41
CTNNA1-216ENST00000519489 HECW1Q76N89 1606 aa12.5□□□□□ -0.41
CTNNA1-216ENST00000519489 TRAPPC8Q9Y2L5 1435 aa12.49□□□□□ -0.41
CTNNA1-216ENST00000519489 SETD1BQ9UPS6 1966 aaKnown RBP12.49□□□□□ -0.41
CTNNA1-216ENST00000519489 ATP10AO60312 1499 aa12.48□□□□□ -0.41
CTNNA1-216ENST00000519489 MAGI2Q86UL8 1455 aa12.48□□□□□ -0.41
CTNNA1-216ENST00000519489 UPF1Q92900 1129 aaKnown RBP eCLIP12.48□□□□□ -0.41
CTNNA1-216ENST00000519489 SETD1AO15047 1707 aaKnown RBP12.48□□□□□ -0.41
CTNNA1-216ENST00000519489 POLA2Q14181 598 aa12.47□□□□□ -0.41
CTNNA1-216ENST00000519489 C9orf84Q5VXU9 1444 aa12.45□□□□□ -0.42
CTNNA1-216ENST00000519489 ATF5Q9Y2D1 282 aaPredicted RBP12.44□□□□□ -0.42
CTNNA1-216ENST00000519489 C3P01024 1663 aa12.44□□□□□ -0.42
CTNNA1-216ENST00000519489 TCOF1Q13428 1488 aaKnown RBP12.43□□□□□ -0.42
CTNNA1-216ENST00000519489 SCAPERQ9BY12 1400 aa12.4□□□□□ -0.42
CTNNA1-216ENST00000519489 PKD2Q13563 968 aa12.39□□□□□ -0.43
CTNNA1-216ENST00000519489 RAPGEF2Q9Y4G8 1499 aa12.39□□□□□ -0.43
CTNNA1-216ENST00000519489 PLA2R1Q13018 1463 aa12.37□□□□□ -0.43
CTNNA1-216ENST00000519489 SHANK2Q9UPX8 1470 aa12.36□□□□□ -0.43
CTNNA1-216ENST00000519489 ATXN8OSP0DMR3 200 aa12.36□□□□□ -0.43
CTNNA1-216ENST00000519489 P3H3Q8IVL6 736 aa12.36□□□□□ -0.43
CTNNA1-216ENST00000519489 RBM42Q9BTD8 480 aaKnown RBP12.36□□□□□ -0.43
CTNNA1-216ENST00000519489 PTPRKQ15262 1439 aa12.35□□□□□ -0.43
CTNNA1-216ENST00000519489 GOLGA3Q08378 1498 aa12.34□□□□□ -0.43
CTNNA1-216ENST00000519489 CPS1P31327 1500 aa12.34□□□□□ -0.43
CTNNA1-216ENST00000519489 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.34□□□□□ -0.43
CTNNA1-216ENST00000519489 NPATQ14207 1427 aa12.31□□□□□ -0.44
CTNNA1-216ENST00000519489 AFAP1Q8N556 730 aa12.31□□□□□ -0.44
CTNNA1-216ENST00000519489 ZBTB12Q9Y330 459 aaPredicted RBP12.3□□□□□ -0.44
CTNNA1-216ENST00000519489 NUP153P49790 1475 aaKnown RBP12.29□□□□□ -0.44
CTNNA1-216ENST00000519489 VWDEQ8N2E2 1590 aa12.29□□□□□ -0.44
CTNNA1-216ENST00000519489 CFAP74Q9C0B2 1584 aa12.28□□□□□ -0.44
CTNNA1-216ENST00000519489 DIP2CQ9Y2E4 1556 aa12.28□□□□□ -0.44
CTNNA1-216ENST00000519489 ZMYM3Q14202 1370 aa12.28□□□□□ -0.44
CTNNA1-216ENST00000519489 NEURL4Q96JN8 1562 aa12.27□□□□□ -0.44
CTNNA1-216ENST00000519489 AGLP35573 1532 aa12.27□□□□□ -0.45
CTNNA1-216ENST00000519489 PLCH2O75038 1416 aa12.25□□□□□ -0.45
CTNNA1-216ENST00000519489 CEP170BQ9Y4F5 1589 aaPredicted RBP12.25□□□□□ -0.45
CTNNA1-216ENST00000519489 TRIM52Q96A61 297 aa12.24□□□□□ -0.45
CTNNA1-216ENST00000519489 LRRC7Q96NW7 1537 aa12.24□□□□□ -0.45
CTNNA1-216ENST00000519489 REREQ9P2R6 1566 aa12.24□□□□□ -0.45
CTNNA1-216ENST00000519489 CNTLNQ9NXG0 1405 aa12.23□□□□□ -0.45
CTNNA1-216ENST00000519489 PLEKHD1A6NEE1 506 aa12.23□□□□□ -0.45
CTNNA1-216ENST00000519489 ESF1Q9H501 851 aaKnown RBP12.23□□□□□ -0.45
CTNNA1-216ENST00000519489 ZNF142P52746 1687 aaPredicted RBP12.22□□□□□ -0.45
CTNNA1-216ENST00000519489 MYO3AQ8NEV4 1616 aa12.22□□□□□ -0.45
CTNNA1-216ENST00000519489 ABCA6Q8N139 1617 aa12.22□□□□□ -0.45
CTNNA1-216ENST00000519489 KDM5CP41229 1560 aa12.22□□□□□ -0.45
CTNNA1-216ENST00000519489 POTEHQ6S545 545 aa12.21□□□□□ -0.45
CTNNA1-216ENST00000519489 RAPGEF6Q8TEU7 1601 aa12.21□□□□□ -0.46
CTNNA1-216ENST00000519489 SUPT5HO00267 1087 aaKnown RBP12.2□□□□□ -0.46
CTNNA1-216ENST00000519489 SETBP1Q9Y6X0 1596 aa12.19□□□□□ -0.46
CTNNA1-216ENST00000519489 STRCP1A6NGW2 1772 aa12.18□□□□□ -0.46
CTNNA1-216ENST00000519489 ZNF518AQ6AHZ1 1483 aa12.18□□□□□ -0.46
CTNNA1-216ENST00000519489 CTTNBP2Q8WZ74 1663 aa12.18□□□□□ -0.46
CTNNA1-216ENST00000519489 DNMT1P26358 1616 aaKnown RBP12.16□□□□□ -0.46
CTNNA1-216ENST00000519489 EFCAB2Q5VUJ9 269 aa12.16□□□□□ -0.46
CTNNA1-216ENST00000519489 A2ML1A8K2U0 1454 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms