RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-222ENST00000515144 WASHC2CQ9Y4E1 1318 aa18.69■□□□□ 0.58
TRIO-222ENST00000515144 NCLP19338 710 aaKnown RBP18.69■□□□□ 0.58
TRIO-222ENST00000515144 EID1Q9Y6B2 187 aa18.69■□□□□ 0.58
TRIO-222ENST00000515144 TNIKQ9UKE5 1360 aa18.69■□□□□ 0.58
TRIO-222ENST00000515144 SUPT16HQ9Y5B9 1047 aaKnown RBP18.68■□□□□ 0.58
TRIO-222ENST00000515144 APBB1O00213 710 aa18.67■□□□□ 0.58
TRIO-222ENST00000515144 AMER1Q5JTC6 1135 aaPredicted RBP18.67■□□□□ 0.58
TRIO-222ENST00000515144 KCNJ4P48050 445 aa18.67■□□□□ 0.58
TRIO-222ENST00000515144 FGD1P98174 961 aa18.67■□□□□ 0.58
TRIO-222ENST00000515144 EFCAB2Q5VUJ9 269 aa18.65■□□□□ 0.58
TRIO-222ENST00000515144 HDGFL2Q7Z4V5 671 aaPredicted RBP18.64■□□□□ 0.58
TRIO-222ENST00000515144 RGS3P49796 1198 aa18.64■□□□□ 0.58
TRIO-222ENST00000515144 EIF5BO60841 1220 aaKnown RBP18.64■□□□□ 0.57
TRIO-222ENST00000515144 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.64■□□□□ 0.571e-6■■■□□ 15.1
TRIO-222ENST00000515144 NGDNQ8NEJ9 315 aaKnown RBP18.64■□□□□ 0.57
TRIO-222ENST00000515144 ROCK2O75116 1388 aaKnown RBP18.63■□□□□ 0.57
TRIO-222ENST00000515144 JPH4Q96JJ6 628 aa18.63■□□□□ 0.57
TRIO-222ENST00000515144 KANK4Q5T7N3 995 aaPredicted RBP18.62■□□□□ 0.57
TRIO-222ENST00000515144 PHF23Q9BUL5 403 aaPredicted RBP18.62■□□□□ 0.57
TRIO-222ENST00000515144 CLSTN1O94985 981 aa18.62■□□□□ 0.57
TRIO-222ENST00000515144 MEX3CQ5U5Q3 659 aaKnown RBP18.62■□□□□ 0.57
TRIO-222ENST00000515144 PNNQ9H307 717 aaKnown RBP18.61■□□□□ 0.57
TRIO-222ENST00000515144 CHMP3Q9Y3E7 222 aa18.61■□□□□ 0.57
TRIO-222ENST00000515144 NUP155O75694 1391 aa18.61■□□□□ 0.57
TRIO-222ENST00000515144 SMARCA4P51532 1647 aa18.6■□□□□ 0.57
TRIO-222ENST00000515144 SPAG9O60271 1321 aaKnown RBP18.59■□□□□ 0.57
TRIO-222ENST00000515144 FHOD3Q2V2M9 1422 aa18.58■□□□□ 0.56
TRIO-222ENST00000515144 OSCARQ8IYS5 282 aa18.58■□□□□ 0.56
TRIO-222ENST00000515144 MSH5O43196 834 aa18.58■□□□□ 0.56
TRIO-222ENST00000515144 EVA1CP58658 441 aa18.57■□□□□ 0.56
TRIO-222ENST00000515144 ZRSR1Q15695 479 aaKnown RBP18.57■□□□□ 0.56
TRIO-222ENST00000515144 G3V3G9 751 aa18.55■□□□□ 0.56
TRIO-222ENST00000515144 DCAF8Q5TAQ9 597 aa18.55■□□□□ 0.56
TRIO-222ENST00000515144 TMX4Q9H1E5 349 aaPredicted RBP18.55■□□□□ 0.56
TRIO-222ENST00000515144 FAM69CQ0P6D2 419 aa18.54■□□□□ 0.56
TRIO-222ENST00000515144 TOP2AP11388 1531 aaKnown RBP18.54■□□□□ 0.56
TRIO-222ENST00000515144 TRAK1Q9UPV9 953 aa18.54■□□□□ 0.56
TRIO-222ENST00000515144 FANCD2Q9BXW9 1451 aa18.53■□□□□ 0.56
TRIO-222ENST00000515144 BECN1Q14457 450 aa18.52■□□□□ 0.56
TRIO-222ENST00000515144 U2AF1L5P0DN76 240 aaPredicted RBP18.52■□□□□ 0.55
TRIO-222ENST00000515144 U2AF1Q01081 240 aaKnown RBP eCLIP18.52■□□□□ 0.55
TRIO-222ENST00000515144 AMPHP49418 695 aa18.51■□□□□ 0.55
TRIO-222ENST00000515144 MPHOSPH9Q99550 1183 aa18.5■□□□□ 0.55
TRIO-222ENST00000515144 KLHL34Q8N239 644 aa18.49■□□□□ 0.55
TRIO-222ENST00000515144 PLCB2Q00722 1185 aa18.48■□□□□ 0.55
TRIO-222ENST00000515144 SPRYD3Q8NCJ5 442 aa18.48■□□□□ 0.55
TRIO-222ENST00000515144 SETD5Q9C0A6 1442 aa18.48■□□□□ 0.55
TRIO-222ENST00000515144 CADPSQ9ULU8 1353 aa18.47■□□□□ 0.55
TRIO-222ENST00000515144 TAF7LQ5H9L4 462 aa18.47■□□□□ 0.55
TRIO-222ENST00000515144 B4GALNT3Q6L9W6 998 aa18.47■□□□□ 0.55
TRIO-222ENST00000515144 SYTL4Q96C24 671 aaPredicted RBP18.47■□□□□ 0.55
TRIO-222ENST00000515144 HSPA5P11021 654 aaKnown RBP18.46■□□□□ 0.55
TRIO-222ENST00000515144 FMN1Q68DA7 1419 aa18.46■□□□□ 0.55
TRIO-222ENST00000515144 ANKRD30AQ9BXX3 1397 aa18.46■□□□□ 0.55
TRIO-222ENST00000515144 CCDC146Q8IYE0 955 aa18.45■□□□□ 0.54
TRIO-222ENST00000515144 NGEFQ8N5V2 710 aa18.43■□□□□ 0.54
TRIO-222ENST00000515144 HSP90AB1P08238 724 aaKnown RBP18.43■□□□□ 0.54
TRIO-222ENST00000515144 GTF2E1P29083 439 aaPredicted RBP18.43■□□□□ 0.54
TRIO-222ENST00000515144 SLC4A10Q6U841 1118 aa18.42■□□□□ 0.54
TRIO-222ENST00000515144 CCDC18Q5T9S5 1454 aa18.42■□□□□ 0.54
TRIO-222ENST00000515144 RAPGEF2Q9Y4G8 1499 aa18.4■□□□□ 0.54
TRIO-222ENST00000515144 GOLGA6L22H0YM25 854 aa18.4■□□□□ 0.54
TRIO-222ENST00000515144 GORABQ5T7V8 394 aa18.4■□□□□ 0.54
TRIO-222ENST00000515144 ATAD2BQ9ULI0 1458 aa18.37■□□□□ 0.53
TRIO-222ENST00000515144 PTMAP06454 111 aaKnown RBP18.37■□□□□ 0.53
TRIO-222ENST00000515144 FRAT2O75474 233 aaPredicted RBP18.37■□□□□ 0.53
TRIO-222ENST00000515144 DDRGK1Q96HY6 314 aa18.37■□□□□ 0.53
TRIO-222ENST00000515144 RAB3GAP2Q9H2M9 1393 aa18.36■□□□□ 0.53
TRIO-222ENST00000515144 KTN1Q86UP2 1357 aaKnown RBP18.36■□□□□ 0.53
TRIO-222ENST00000515144 PTPRGP23470 1445 aa18.36■□□□□ 0.53
TRIO-222ENST00000515144 ITPRIPQ8IWB1 547 aa18.35■□□□□ 0.53
TRIO-222ENST00000515144 RAD54L2Q9Y4B4 1467 aa18.35■□□□□ 0.53
TRIO-222ENST00000515144 PSME1Q06323 249 aa18.35■□□□□ 0.53
TRIO-222ENST00000515144 MINK1Q8N4C8 1332 aaPredicted RBP18.35■□□□□ 0.53
TRIO-222ENST00000515144 GNL2Q13823 731 aaKnown RBP18.35■□□□□ 0.53
TRIO-222ENST00000515144 VPS8Q8N3P4 1428 aa18.34■□□□□ 0.53
TRIO-222ENST00000515144 TERF2IPQ9NYB0 399 aa18.34■□□□□ 0.53
TRIO-222ENST00000515144 TRIM44Q96DX7 344 aaPredicted RBP18.33■□□□□ 0.53
TRIO-222ENST00000515144 EIF3AQ14152 1382 aaKnown RBP18.32■□□□□ 0.52
TRIO-222ENST00000515144 NUTM2GQ5VZR2 741 aa18.32■□□□□ 0.52
TRIO-222ENST00000515144 NECTIN2Q92692 538 aa18.31■□□□□ 0.52
TRIO-222ENST00000515144 RUSC2Q8N2Y8 1516 aa18.31■□□□□ 0.52
TRIO-222ENST00000515144 RRP7AQ9Y3A4 280 aaKnown RBP18.31■□□□□ 0.52
TRIO-222ENST00000515144 GAPVD1Q14C86 1478 aa18.3■□□□□ 0.52
TRIO-222ENST00000515144 DNTTIP2Q5QJE6 756 aaKnown RBP18.3■□□□□ 0.52
TRIO-222ENST00000515144 MS4A1P11836 297 aa18.3■□□□□ 0.52
TRIO-222ENST00000515144 CHMP4BQ9H444 224 aaKnown RBP18.3■□□□□ 0.52
TRIO-222ENST00000515144 AQRO60306 1485 aaKnown RBP eCLIP18.29■□□□□ 0.523e-6■□□□□ 10.2
TRIO-222ENST00000515144 ANO8Q9HCE9 1232 aaPredicted RBP18.29■□□□□ 0.52
TRIO-222ENST00000515144 CC2D2AQ9P2K1 1620 aa18.29■□□□□ 0.52
TRIO-222ENST00000515144 STK31Q9BXU1 1019 aa18.28■□□□□ 0.52
TRIO-222ENST00000515144 TRIM6-TRIM34B2RNG4 842 aa18.27■□□□□ 0.52
TRIO-222ENST00000515144 USP35Q9P2H5 1018 aa18.27■□□□□ 0.51
TRIO-222ENST00000515144 C1orf141Q5JVX7 400 aa18.26■□□□□ 0.51
TRIO-222ENST00000515144 ATF3P18847 181 aa18.26■□□□□ 0.51
TRIO-222ENST00000515144 KIAA1211Q6ZU35 1233 aa18.26■□□□□ 0.51
TRIO-222ENST00000515144 FBXW7Q969H0 707 aa18.26■□□□□ 0.51
TRIO-222ENST00000515144 FGD5Q6ZNL6 1462 aa18.26■□□□□ 0.51
TRIO-222ENST00000515144 ELL2O00472 640 aaPredicted RBP18.25■□□□□ 0.51
TRIO-222ENST00000515144 PIP4K2BP78356 416 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms