RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 NUDCQ9Y266 331 aa14.55□□□□□ -0.08
TCOF1-211ENST00000513346 GSE1Q14687 1217 aa14.54□□□□□ -0.08
TCOF1-211ENST00000513346 CDCA8Q53HL2 280 aa14.54□□□□□ -0.08
TCOF1-211ENST00000513346 FOXD1Q16676 465 aa14.53□□□□□ -0.08
TCOF1-211ENST00000513346 HDGFP51858 240 aaKnown RBP14.52□□□□□ -0.08
TCOF1-211ENST00000513346 ZBTB7CA1YPR0 619 aa14.5□□□□□ -0.09
TCOF1-211ENST00000513346 RAD54L2Q9Y4B4 1467 aa14.5□□□□□ -0.09
TCOF1-211ENST00000513346 KANK1Q14678 1352 aa14.5□□□□□ -0.09
TCOF1-211ENST00000513346 AQRO60306 1485 aaKnown RBP eCLIP14.5□□□□□ -0.095e-7■■■■■ 40.3
TCOF1-211ENST00000513346 RCAN3Q9UKA8 241 aa14.5□□□□□ -0.09
TCOF1-211ENST00000513346 KNSTRNQ9Y448 316 aa14.49□□□□□ -0.09
TCOF1-211ENST00000513346 DCAF11Q8TEB1 546 aa14.47□□□□□ -0.09
TCOF1-211ENST00000513346 PTPRGP23470 1445 aa14.47□□□□□ -0.09
TCOF1-211ENST00000513346 NCLP19338 710 aaKnown RBP14.47□□□□□ -0.09
TCOF1-211ENST00000513346 HMGXB3Q12766 1538 aa14.47□□□□□ -0.09
TCOF1-211ENST00000513346 PDE4AP27815 886 aa14.46□□□□□ -0.09
TCOF1-211ENST00000513346 IGF1RP08069 1367 aa14.46□□□□□ -0.09
TCOF1-211ENST00000513346 GAPVD1Q14C86 1478 aa14.46□□□□□ -0.09
TCOF1-211ENST00000513346 PKD2Q13563 968 aa14.46□□□□□ -0.09
TCOF1-211ENST00000513346 HSP90AA2PQ14568 343 aaPredicted RBP14.46□□□□□ -0.09
TCOF1-211ENST00000513346 A0A0G2JS52 829 aa14.45□□□□□ -0.1
TCOF1-211ENST00000513346 PTMAP06454 111 aaKnown RBP14.45□□□□□ -0.1
TCOF1-211ENST00000513346 CFAP53Q96M91 514 aa14.45□□□□□ -0.1
TCOF1-211ENST00000513346 POGKQ9P215 609 aa14.45□□□□□ -0.1
TCOF1-211ENST00000513346 MRC2Q9UBG0 1479 aa14.45□□□□□ -0.1
TCOF1-211ENST00000513346 ZBED9Q6R2W3 1325 aa14.45□□□□□ -0.1
TCOF1-211ENST00000513346 DNTTIP2Q5QJE6 756 aaKnown RBP14.45□□□□□ -0.1
TCOF1-211ENST00000513346 GGT6Q6P531 493 aa14.45□□□□□ -0.1
TCOF1-211ENST00000513346 VSIG10Q8N0Z9 540 aa14.45□□□□□ -0.1
TCOF1-211ENST00000513346 MPHOSPH9Q99550 1183 aa14.45□□□□□ -0.1
TCOF1-211ENST00000513346 FGD5Q6ZNL6 1462 aa14.43□□□□□ -0.1
TCOF1-211ENST00000513346 BICRAQ9NZM4 1560 aa14.43□□□□□ -0.1
TCOF1-211ENST00000513346 MSNP26038 577 aaKnown RBP14.42□□□□□ -0.1
TCOF1-211ENST00000513346 GOLGA6L3A6NEY3 463 aa14.42□□□□□ -0.1
TCOF1-211ENST00000513346 MSH5O43196 834 aa14.42□□□□□ -0.1
TCOF1-211ENST00000513346 RSPH4AQ5TD94 716 aa14.42□□□□□ -0.1
TCOF1-211ENST00000513346 CFTRP13569 1480 aa14.41□□□□□ -0.1
TCOF1-211ENST00000513346 IL27Q8NEV9 243 aa14.4□□□□□ -0.1
TCOF1-211ENST00000513346 SLKQ9H2G2 1235 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-211ENST00000513346 HAP1P54257 671 aaPredicted RBP14.39□□□□□ -0.11
TCOF1-211ENST00000513346 MS4A1P11836 297 aa14.39□□□□□ -0.11
TCOF1-211ENST00000513346 HSCBQ8IWL3 235 aa14.38□□□□□ -0.11
TCOF1-211ENST00000513346 GZF1Q9H116 711 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-211ENST00000513346 IFT140Q96RY7 1462 aa14.37□□□□□ -0.11
TCOF1-211ENST00000513346 PRKRIP1Q9H875 184 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-211ENST00000513346 HSP90AB1P08238 724 aaKnown RBP14.37□□□□□ -0.11
TCOF1-211ENST00000513346 NUP155O75694 1391 aa14.37□□□□□ -0.11
TCOF1-211ENST00000513346 PAK3O75914 559 aaPredicted RBP14.37□□□□□ -0.11
TCOF1-211ENST00000513346 MYH16Q9H6N6 1097 aa14.37□□□□□ -0.11
TCOF1-211ENST00000513346 GRIN2BQ13224 1484 aa14.36□□□□□ -0.11
TCOF1-211ENST00000513346 PDE3BQ13370 1112 aa14.35□□□□□ -0.11
TCOF1-211ENST00000513346 CC2D1BQ5T0F9 858 aaKnown RBP14.35□□□□□ -0.11
TCOF1-211ENST00000513346 SPRYD3Q8NCJ5 442 aa14.35□□□□□ -0.11
TCOF1-211ENST00000513346 L3MBTL2Q969R5 705 aa14.35□□□□□ -0.11
TCOF1-211ENST00000513346 LMOD2Q6P5Q4 547 aa14.35□□□□□ -0.11
TCOF1-211ENST00000513346 FAM69CQ0P6D2 419 aa14.35□□□□□ -0.11
TCOF1-211ENST00000513346 FRAT1Q92837 279 aaPredicted RBP14.34□□□□□ -0.11
TCOF1-211ENST00000513346 ANKRD30AQ9BXX3 1397 aa14.34□□□□□ -0.11
TCOF1-211ENST00000513346 SLC4A3P48751 1232 aa14.34□□□□□ -0.11
TCOF1-211ENST00000513346 HNRNPMP52272 730 aaKnown RBP eCLIP14.34□□□□□ -0.11
TCOF1-211ENST00000513346 RALBP1Q15311 655 aa14.34□□□□□ -0.11
TCOF1-211ENST00000513346 NEUROD2Q15784 382 aa14.34□□□□□ -0.11
TCOF1-211ENST00000513346 TMF1P82094 1093 aa14.33□□□□□ -0.12
TCOF1-211ENST00000513346 SYNJ1O43426 1573 aa14.33□□□□□ -0.12
TCOF1-211ENST00000513346 FTSJ3Q8IY81 847 aaKnown RBP14.33□□□□□ -0.12
TCOF1-211ENST00000513346 CCDC18Q5T9S5 1454 aa14.32□□□□□ -0.12
TCOF1-211ENST00000513346 CDK11BP21127 795 aaKnown RBP14.32□□□□□ -0.12
TCOF1-211ENST00000513346 EXOC6Q8TAG9 804 aa14.32□□□□□ -0.12
TCOF1-211ENST00000513346 KIF21BO75037 1637 aa14.32□□□□□ -0.12
TCOF1-211ENST00000513346 SPAG9O60271 1321 aaKnown RBP14.32□□□□□ -0.12
TCOF1-211ENST00000513346 PTMSP20962 102 aa14.31□□□□□ -0.12
TCOF1-211ENST00000513346 MAPK8IP3Q9UPT6 1336 aa14.31□□□□□ -0.12
TCOF1-211ENST00000513346 RRP1P56182 461 aaKnown RBP14.3□□□□□ -0.12
TCOF1-211ENST00000513346 NFKBIBQ15653 356 aa14.3□□□□□ -0.12
TCOF1-211ENST00000513346 FAM161AQ3B820 660 aa14.3□□□□□ -0.12
TCOF1-211ENST00000513346 GBP4Q96PP9 640 aa14.3□□□□□ -0.12
TCOF1-211ENST00000513346 BRPF3Q9ULD4 1205 aa14.29□□□□□ -0.12
TCOF1-211ENST00000513346 KTN1Q86UP2 1357 aaKnown RBP14.29□□□□□ -0.12
TCOF1-211ENST00000513346 PKNOX2Q96KN3 472 aa14.28□□□□□ -0.12
TCOF1-211ENST00000513346 SAFB2Q14151 953 aaKnown RBP eCLIP14.27□□□□□ -0.12
TCOF1-211ENST00000513346 SRPK2P78362 688 aaKnown RBP14.27□□□□□ -0.13
TCOF1-211ENST00000513346 AEBP2Q6ZN18 517 aaPredicted RBP14.27□□□□□ -0.13
TCOF1-211ENST00000513346 CENPQQ7L2Z9 268 aaPredicted RBP14.26□□□□□ -0.13
TCOF1-211ENST00000513346 LAMC3Q9Y6N6 1575 aa14.26□□□□□ -0.13
TCOF1-211ENST00000513346 U2SURPO15042 1029 aaKnown RBP14.26□□□□□ -0.13
TCOF1-211ENST00000513346 KIF3BO15066 747 aa14.25□□□□□ -0.13
TCOF1-211ENST00000513346 ARAP1Q96P48 1450 aa14.24□□□□□ -0.13
TCOF1-211ENST00000513346 PHLDB1Q86UU1 1377 aa14.24□□□□□ -0.13
TCOF1-211ENST00000513346 NLRP13Q86W25 1043 aa14.23□□□□□ -0.13
TCOF1-211ENST00000513346 STK26Q9P289 416 aa14.23□□□□□ -0.13
TCOF1-211ENST00000513346 CHAF1AQ13111 956 aaPredicted RBP14.23□□□□□ -0.13
TCOF1-211ENST00000513346 CASC1Q6TDU7 716 aa14.23□□□□□ -0.13
TCOF1-211ENST00000513346 EID1Q9Y6B2 187 aa14.23□□□□□ -0.13
TCOF1-211ENST00000513346 FAM43AQ8N2R8 423 aa14.22□□□□□ -0.13
TCOF1-211ENST00000513346 ROCK2O75116 1388 aaKnown RBP14.22□□□□□ -0.13
TCOF1-211ENST00000513346 TOPBP1Q92547 1522 aa14.22□□□□□ -0.13
TCOF1-211ENST00000513346 WASHC2CQ9Y4E1 1318 aa14.21□□□□□ -0.13
TCOF1-211ENST00000513346 ARID3AQ99856 593 aa14.21□□□□□ -0.13
TCOF1-211ENST00000513346 PLCB2Q00722 1185 aa14.2□□□□□ -0.14
TCOF1-211ENST00000513346 SOX12O15370 315 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms