RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 DMRT2Q9Y5R5 561 aa15.99■□□□□ 0.15
NUP54-211ENST00000512151 EFCAB5A4FU69 1503 aa15.98■□□□□ 0.15
NUP54-211ENST00000512151 HECW1Q76N89 1606 aa15.96■□□□□ 0.15
NUP54-211ENST00000512151 RAPGEF6Q8TEU7 1601 aa15.96■□□□□ 0.15
NUP54-211ENST00000512151 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.96■□□□□ 0.15
NUP54-211ENST00000512151 HNRNPUL2Q1KMD3 747 aaKnown RBP15.96■□□□□ 0.15
NUP54-211ENST00000512151 PTPRTO14522 1441 aa15.95■□□□□ 0.14
NUP54-211ENST00000512151 NUP153P49790 1475 aaKnown RBP15.94■□□□□ 0.14
NUP54-211ENST00000512151 MAGI2Q86UL8 1455 aa15.93■□□□□ 0.14
NUP54-211ENST00000512151 PRXQ9BXM0 1461 aa15.93■□□□□ 0.14
NUP54-211ENST00000512151 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.92■□□□□ 0.145e-6■□□□□ 11
NUP54-211ENST00000512151 CFAP74Q9C0B2 1584 aa15.91■□□□□ 0.14
NUP54-211ENST00000512151 UHRF1BP1Q6BDS2 1440 aa15.91■□□□□ 0.14
NUP54-211ENST00000512151 IQSEC2Q5JU85 1478 aa15.9■□□□□ 0.14
NUP54-211ENST00000512151 SAMD9Q5K651 1589 aa15.9■□□□□ 0.14
NUP54-211ENST00000512151 ATP10AO60312 1499 aa15.89■□□□□ 0.14
NUP54-211ENST00000512151 FAM9AQ8IZU1 332 aaPredicted RBP15.88■□□□□ 0.13
NUP54-211ENST00000512151 SETD1BQ9UPS6 1966 aaKnown RBP15.88■□□□□ 0.13
NUP54-211ENST00000512151 C9orf84Q5VXU9 1444 aa15.87■□□□□ 0.13
NUP54-211ENST00000512151 SCAPERQ9BY12 1400 aa15.87■□□□□ 0.13
NUP54-211ENST00000512151 PLEKHD1A6NEE1 506 aa15.86■□□□□ 0.13
NUP54-211ENST00000512151 NCOA1Q15788 1441 aa15.83■□□□□ 0.12
NUP54-211ENST00000512151 UBAP1LF5GYI3 381 aa15.82■□□□□ 0.12
NUP54-211ENST00000512151 C3P01024 1663 aa15.81■□□□□ 0.12
NUP54-211ENST00000512151 MED1Q15648 1581 aaPredicted RBP15.79■□□□□ 0.12
NUP54-211ENST00000512151 ZNF335Q9H4Z2 1342 aaPredicted RBP15.79■□□□□ 0.12
NUP54-211ENST00000512151 PLCH2O75038 1416 aa15.79■□□□□ 0.12
NUP54-211ENST00000512151 TRAPPC8Q9Y2L5 1435 aa15.76■□□□□ 0.11
NUP54-211ENST00000512151 DIP2CQ9Y2E4 1556 aa15.74■□□□□ 0.11
NUP54-211ENST00000512151 NCKAP5LQ9HCH0 1330 aa15.74■□□□□ 0.11
NUP54-211ENST00000512151 CDK13Q14004 1512 aaKnown RBP15.74■□□□□ 0.11
NUP54-211ENST00000512151 CAMSAP1Q5T5Y3 1602 aa15.74■□□□□ 0.11
NUP54-211ENST00000512151 RANGAP1P46060 587 aaPredicted RBP15.74■□□□□ 0.11
NUP54-211ENST00000512151 AFAP1Q8N556 730 aa15.74■□□□□ 0.11
NUP54-211ENST00000512151 HSPA1LP34931 641 aa15.73■□□□□ 0.11
NUP54-211ENST00000512151 KDM5CP41229 1560 aa15.72■□□□□ 0.11
NUP54-211ENST00000512151 EFCAB2Q5VUJ9 269 aa15.7■□□□□ 0.1
NUP54-211ENST00000512151 REREQ9P2R6 1566 aa15.7■□□□□ 0.1
NUP54-211ENST00000512151 ZNF518AQ6AHZ1 1483 aa15.69■□□□□ 0.1
NUP54-211ENST00000512151 ABCA6Q8N139 1617 aa15.69■□□□□ 0.1
NUP54-211ENST00000512151 MYO5CQ9NQX4 1742 aa15.67■□□□□ 0.1
NUP54-211ENST00000512151 AGLP35573 1532 aa15.66■□□□□ 0.1
NUP54-211ENST00000512151 PIP4K2BP78356 416 aa15.64■□□□□ 0.09
NUP54-211ENST00000512151 MYT1LQ9UL68 1186 aa15.64■□□□□ 0.09
NUP54-211ENST00000512151 KIF14Q15058 1648 aa15.64■□□□□ 0.09
NUP54-211ENST00000512151 ESF1Q9H501 851 aaKnown RBP15.63■□□□□ 0.09
NUP54-211ENST00000512151 SCAF1Q9H7N4 1312 aaKnown RBP15.63■□□□□ 0.09
NUP54-211ENST00000512151 NPATQ14207 1427 aa15.62■□□□□ 0.09
NUP54-211ENST00000512151 MLH3Q9UHC1 1453 aa15.62■□□□□ 0.09
NUP54-211ENST00000512151 CNTLNQ9NXG0 1405 aa15.61■□□□□ 0.09
NUP54-211ENST00000512151 TCOF1Q13428 1488 aaKnown RBP15.61■□□□□ 0.09
NUP54-211ENST00000512151 ARHGAP5Q13017 1502 aa15.61■□□□□ 0.09
NUP54-211ENST00000512151 CSRNP3Q8WYN3 585 aa15.61■□□□□ 0.09
NUP54-211ENST00000512151 PLA2R1Q13018 1463 aa15.6■□□□□ 0.09
NUP54-211ENST00000512151 PKD2Q13563 968 aa15.6■□□□□ 0.09
NUP54-211ENST00000512151 ZMYM3Q14202 1370 aa15.58■□□□□ 0.08
NUP54-211ENST00000512151 ZNF142P52746 1687 aaPredicted RBP15.58■□□□□ 0.08
NUP54-211ENST00000512151 MROH2AA6NES4 1674 aa15.57■□□□□ 0.08
NUP54-211ENST00000512151 MYO3AQ8NEV4 1616 aa15.57■□□□□ 0.08
NUP54-211ENST00000512151 KIDINS220Q9ULH0 1771 aa15.57■□□□□ 0.08
NUP54-211ENST00000512151 ALKQ9UM73 1620 aa15.56■□□□□ 0.08
NUP54-211ENST00000512151 PPP6R1Q9UPN7 881 aa15.56■□□□□ 0.08
NUP54-211ENST00000512151 CEP170BQ9Y4F5 1589 aaPredicted RBP15.55■□□□□ 0.08
NUP54-211ENST00000512151 CDC42BPBQ9Y5S2 1711 aa15.54■□□□□ 0.08
NUP54-211ENST00000512151 TOM1O60784 492 aa15.54■□□□□ 0.08
NUP54-211ENST00000512151 PTPRKQ15262 1439 aa15.53■□□□□ 0.08
NUP54-211ENST00000512151 SUPT6HQ7KZ85 1726 aaKnown RBP15.53■□□□□ 0.08
NUP54-211ENST00000512151 ABCC1P33527 1531 aa15.53■□□□□ 0.08
NUP54-211ENST00000512151 TROQ12816 1431 aaPredicted RBP15.52■□□□□ 0.08
NUP54-211ENST00000512151 RGS17Q9UGC6 210 aaPredicted RBP15.52■□□□□ 0.08
NUP54-211ENST00000512151 ITSN2Q9NZM3 1697 aa15.52■□□□□ 0.08
NUP54-211ENST00000512151 ATP1B4Q9UN42 357 aaPredicted RBP15.51■□□□□ 0.07
NUP54-211ENST00000512151 CLTCQ00610 1675 aaKnown RBP15.51■□□□□ 0.07
NUP54-211ENST00000512151 CPS1P31327 1500 aa15.5■□□□□ 0.07
NUP54-211ENST00000512151 SHANK2Q9UPX8 1470 aa15.49■□□□□ 0.07
NUP54-211ENST00000512151 NEURL4Q96JN8 1562 aa15.49■□□□□ 0.07
NUP54-211ENST00000512151 PREX2Q70Z35 1606 aa15.47■□□□□ 0.07
NUP54-211ENST00000512151 CDK11AQ9UQ88 783 aaPredicted RBP15.47■□□□□ 0.07
NUP54-211ENST00000512151 DNMT1P26358 1616 aaKnown RBP15.46■□□□□ 0.07
NUP54-211ENST00000512151 CACNB1Q02641 598 aaPredicted RBP15.46■□□□□ 0.07
NUP54-211ENST00000512151 SAMD9LQ8IVG5 1584 aa15.46■□□□□ 0.06
NUP54-211ENST00000512151 LRRIQ1Q96JM4 1722 aa15.46■□□□□ 0.06
NUP54-211ENST00000512151 A2ML1A8K2U0 1454 aa15.45■□□□□ 0.06
NUP54-211ENST00000512151 VWDEQ8N2E2 1590 aa15.45■□□□□ 0.06
NUP54-211ENST00000512151 CLIP1P30622 1438 aa15.43■□□□□ 0.06
NUP54-211ENST00000512151 POLR1AO95602 1720 aaPredicted RBP15.43■□□□□ 0.06
NUP54-211ENST00000512151 PLXNC1O60486 1568 aa15.41■□□□□ 0.06
NUP54-211ENST00000512151 FMN1Q68DA7 1419 aa15.41■□□□□ 0.06
NUP54-211ENST00000512151 GGT6Q6P531 493 aa15.39■□□□□ 0.05
NUP54-211ENST00000512151 POTEAQ6S8J7 498 aa15.39■□□□□ 0.05
NUP54-211ENST00000512151 SPAG9O60271 1321 aaKnown RBP15.38■□□□□ 0.05
NUP54-211ENST00000512151 ARHGAP35Q9NRY4 1499 aa15.38■□□□□ 0.05
NUP54-211ENST00000512151 CDC42BPAQ5VT25 1732 aa15.38■□□□□ 0.05
NUP54-211ENST00000512151 ADRA2BP18089 450 aa15.37■□□□□ 0.05
NUP54-211ENST00000512151 A2MP01023 1474 aa15.37■□□□□ 0.05
NUP54-211ENST00000512151 SYCP2Q9BX26 1530 aa15.37■□□□□ 0.05
NUP54-211ENST00000512151 STRCP1A6NGW2 1772 aa15.37■□□□□ 0.05
NUP54-211ENST00000512151 ATP7AQ04656 1500 aa15.37■□□□□ 0.05
NUP54-211ENST00000512151 HNRNPMP52272 730 aaKnown RBP eCLIP15.36■□□□□ 0.051e-7■■■■□ 25.9
NUP54-211ENST00000512151 FBXO31Q5XUX0 539 aaPredicted RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms