RNA–Protein interactions for RNA: ENST00000511739.1

USP38-203, Transcript of ubiquitin specific peptidase 38, humanhuman

TSL 2

Gene USP38, Length 6,376 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-203ENST00000511739 FANCD2Q9BXW9 1451 aa7.45□□□□□ -1.22
USP38-203ENST00000511739 CSB-PGBD3P0DP91 1061 aa7.45□□□□□ -1.22
USP38-203ENST00000511739 ERICH3Q5RHP9 1530 aa7.45□□□□□ -1.22
USP38-203ENST00000511739 GOLGA6L4A6NEF3 574 aa7.45□□□□□ -1.22
USP38-203ENST00000511739 CFTRP13569 1480 aa7.44□□□□□ -1.22
USP38-203ENST00000511739 ERCC6Q03468 1493 aa7.44□□□□□ -1.22
USP38-203ENST00000511739 U2SURPO15042 1029 aaKnown RBP7.44□□□□□ -1.22
USP38-203ENST00000511739 RUSC2Q8N2Y8 1516 aa7.44□□□□□ -1.22
USP38-203ENST00000511739 ARHGAP35Q9NRY4 1499 aa7.44□□□□□ -1.22
USP38-203ENST00000511739 L1TD1Q5T7N2 865 aaKnown RBP7.44□□□□□ -1.22
USP38-203ENST00000511739 PNNQ9H307 717 aaKnown RBP7.44□□□□□ -1.22
USP38-203ENST00000511739 GNL2Q13823 731 aaKnown RBP7.43□□□□□ -1.22
USP38-203ENST00000511739 AEBP2Q6ZN18 517 aaPredicted RBP7.42□□□□□ -1.22
USP38-203ENST00000511739 TOP2BQ02880 1626 aa7.42□□□□□ -1.22
USP38-203ENST00000511739 SETD5Q9C0A6 1442 aa7.42□□□□□ -1.22
USP38-203ENST00000511739 KIAA2012Q0VF49 1180 aa7.42□□□□□ -1.22
USP38-203ENST00000511739 CHAF1AQ13111 956 aaPredicted RBP7.42□□□□□ -1.22
USP38-203ENST00000511739 IRX6P78412 446 aaPredicted RBP7.42□□□□□ -1.22
USP38-203ENST00000511739 CFDP1Q9UEE9 299 aaPredicted RBP7.41□□□□□ -1.22
USP38-203ENST00000511739 RTF1Q92541 710 aaKnown RBP7.41□□□□□ -1.22
USP38-203ENST00000511739 PAK3O75914 559 aaPredicted RBP7.41□□□□□ -1.22
USP38-203ENST00000511739 FRAT1Q92837 279 aaPredicted RBP7.41□□□□□ -1.22
USP38-203ENST00000511739 UNC13AQ9UPW8 1703 aa7.4□□□□□ -1.22
USP38-203ENST00000511739 MS4A1P11836 297 aa7.4□□□□□ -1.22
USP38-203ENST00000511739 SYNJ1O43426 1573 aa7.4□□□□□ -1.22
USP38-203ENST00000511739 HIRIP3Q9BW71 556 aaPredicted RBP7.4□□□□□ -1.23
USP38-203ENST00000511739 DCAF8L1A6NGE4 600 aa7.39□□□□□ -1.23
USP38-203ENST00000511739 FGD5Q6ZNL6 1462 aa7.39□□□□□ -1.23
USP38-203ENST00000511739 CARD11Q9BXL7 1154 aa7.39□□□□□ -1.23
USP38-203ENST00000511739 CARMIL2Q6F5E8 1435 aa7.39□□□□□ -1.23
USP38-203ENST00000511739 IGF1RP08069 1367 aa7.39□□□□□ -1.23
USP38-203ENST00000511739 SRPK2P78362 688 aaKnown RBP7.39□□□□□ -1.23
USP38-203ENST00000511739 DNAJC5BQ9UF47 199 aa7.39□□□□□ -1.23
USP38-203ENST00000511739 HSP90AB1P08238 724 aaKnown RBP7.39□□□□□ -1.23
USP38-203ENST00000511739 KANK4Q5T7N3 995 aaPredicted RBP7.38□□□□□ -1.23
USP38-203ENST00000511739 NOC3LQ8WTT2 800 aaKnown RBP7.38□□□□□ -1.23
USP38-203ENST00000511739 MCCP23508 829 aa7.38□□□□□ -1.23
USP38-203ENST00000511739 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.38□□□□□ -1.23
USP38-203ENST00000511739 TDRD9Q8NDG6 1382 aaKnown RBP7.38□□□□□ -1.23
USP38-203ENST00000511739 SENP3-EIF4A1A0A087X0R7 540 aa7.38□□□□□ -1.23
USP38-203ENST00000511739 GTF2E1P29083 439 aaPredicted RBP7.37□□□□□ -1.23
USP38-203ENST00000511739 MIER1Q8N108 512 aa7.37□□□□□ -1.23
USP38-203ENST00000511739 PDE4CQ08493 712 aa7.37□□□□□ -1.23
USP38-203ENST00000511739 TAF7LQ5H9L4 462 aa7.37□□□□□ -1.23
USP38-203ENST00000511739 GORABQ5T7V8 394 aa7.37□□□□□ -1.23
USP38-203ENST00000511739 PRXQ9BXM0 1461 aa7.36□□□□□ -1.23
USP38-203ENST00000511739 KANK1Q14678 1352 aa7.36□□□□□ -1.23
USP38-203ENST00000511739 SAFB2Q14151 953 aaKnown RBP eCLIP7.36□□□□□ -1.23
USP38-203ENST00000511739 MSH5O43196 834 aa7.36□□□□□ -1.23
USP38-203ENST00000511739 DRC7Q8IY82 874 aa7.35□□□□□ -1.23
USP38-203ENST00000511739 FRAT2O75474 233 aaPredicted RBP7.35□□□□□ -1.23
USP38-203ENST00000511739 RGS3P49796 1198 aa7.35□□□□□ -1.23
USP38-203ENST00000511739 CNKSR2Q8WXI2 1034 aa7.35□□□□□ -1.23
USP38-203ENST00000511739 KIAA1211Q6ZU35 1233 aa7.35□□□□□ -1.23
USP38-203ENST00000511739 VPS53Q5VIR6 699 aa7.34□□□□□ -1.23
USP38-203ENST00000511739 CHMP3Q9Y3E7 222 aa7.34□□□□□ -1.23
USP38-203ENST00000511739 GAPVD1Q14C86 1478 aa7.34□□□□□ -1.23
USP38-203ENST00000511739 RAB3GAP2Q9H2M9 1393 aa7.34□□□□□ -1.23
USP38-203ENST00000511739 CEP89Q96ST8 783 aa7.34□□□□□ -1.23
USP38-203ENST00000511739 PHF23Q9BUL5 403 aaPredicted RBP7.34□□□□□ -1.23
USP38-203ENST00000511739 AMER1Q5JTC6 1135 aaPredicted RBP7.34□□□□□ -1.24
USP38-203ENST00000511739 GGT6Q6P531 493 aa7.33□□□□□ -1.24
USP38-203ENST00000511739 CCDC18Q5T9S5 1454 aa7.33□□□□□ -1.24
USP38-203ENST00000511739 STK26Q9P289 416 aa7.33□□□□□ -1.24
USP38-203ENST00000511739 FHOD3Q2V2M9 1422 aa7.33□□□□□ -1.24
USP38-203ENST00000511739 MARCH6O60337 910 aa7.33□□□□□ -1.24
USP38-203ENST00000511739 RASSF8Q8NHQ8 419 aa7.33□□□□□ -1.24
USP38-203ENST00000511739 CC2D1BQ5T0F9 858 aaKnown RBP7.33□□□□□ -1.24
USP38-203ENST00000511739 HDGFL2Q7Z4V5 671 aaPredicted RBP7.33□□□□□ -1.24
USP38-203ENST00000511739 CUX1P39880 1505 aa7.32□□□□□ -1.24
USP38-203ENST00000511739 ERICH6BQ5W0A0 696 aa7.32□□□□□ -1.24
USP38-203ENST00000511739 CHMP4AQ9BY43 222 aa7.32□□□□□ -1.24
USP38-203ENST00000511739 EFCAB5A4FU69 1503 aa7.32□□□□□ -1.24
USP38-203ENST00000511739 CCDC34Q96HJ3 373 aa7.32□□□□□ -1.24
USP38-203ENST00000511739 CC2D2AQ9P2K1 1620 aa7.32□□□□□ -1.24
USP38-203ENST00000511739 A0A0U1RQG5 324 aaPredicted RBP7.31□□□□□ -1.24
USP38-203ENST00000511739 MORC1Q86VD1 984 aa7.31□□□□□ -1.24
USP38-203ENST00000511739 APBB1O00213 710 aa7.31□□□□□ -1.24
USP38-203ENST00000511739 CFAP44Q96MT7 982 aa7.31□□□□□ -1.24
USP38-203ENST00000511739 CWC22Q9HCG8 908 aaKnown RBP7.31□□□□□ -1.24
USP38-203ENST00000511739 CTDP1Q9Y5B0 961 aaPredicted RBP7.31□□□□□ -1.24
USP38-203ENST00000511739 MEX3CQ5U5Q3 659 aaKnown RBP7.31□□□□□ -1.24
USP38-203ENST00000511739 KLHL34Q8N239 644 aa7.31□□□□□ -1.24
USP38-203ENST00000511739 DNMBPQ6XZF7 1577 aa7.31□□□□□ -1.24
USP38-203ENST00000511739 TMF1P82094 1093 aa7.3□□□□□ -1.24
USP38-203ENST00000511739 HSCBQ8IWL3 235 aa7.3□□□□□ -1.24
USP38-203ENST00000511739 BIVM-ERCC5R4GMW8 1640 aa7.3□□□□□ -1.24
USP38-203ENST00000511739 RSPH4AQ5TD94 716 aa7.3□□□□□ -1.24
USP38-203ENST00000511739 EID1Q9Y6B2 187 aa7.3□□□□□ -1.24
USP38-203ENST00000511739 WWC1Q8IX03 1113 aa7.3□□□□□ -1.24
USP38-203ENST00000511739 NAP1L5Q96NT1 182 aaPredicted RBP7.3□□□□□ -1.24
USP38-203ENST00000511739 HTATSF1O43719 755 aaKnown RBP7.29□□□□□ -1.24
USP38-203ENST00000511739 TOMM22Q9NS69 142 aa7.29□□□□□ -1.24
USP38-203ENST00000511739 CASKIN1Q8WXD9 1431 aa7.29□□□□□ -1.24
USP38-203ENST00000511739 DHX57Q6P158 1386 aaKnown RBP7.29□□□□□ -1.24
USP38-203ENST00000511739 FYCO1Q9BQS8 1478 aa7.29□□□□□ -1.24
USP38-203ENST00000511739 CCER2I3L3R5 266 aa7.29□□□□□ -1.24
USP38-203ENST00000511739 SIN3AQ96ST3 1273 aa7.29□□□□□ -1.24
USP38-203ENST00000511739 TCEAL9Q9UHQ7 104 aa7.29□□□□□ -1.24
USP38-203ENST00000511739 LAMC3Q9Y6N6 1575 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms