RNA–Protein interactions for RNA: ENST00000509431.1

HMGCR-208, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

TSL 2

Gene HMGCR, Length 421 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-208ENST00000509431 RAPGEF6Q8TEU7 1601 aa23.75■■□□□ 1.39
HMGCR-208ENST00000509431 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.75■■□□□ 1.39
HMGCR-208ENST00000509431 HNRNPUL2Q1KMD3 747 aaKnown RBP23.75■■□□□ 1.39
HMGCR-208ENST00000509431 HECW1Q76N89 1606 aa23.7■■□□□ 1.39
HMGCR-208ENST00000509431 CEBPAP49715 358 aaPredicted RBP23.69■■□□□ 1.38
HMGCR-208ENST00000509431 ATP10AO60312 1499 aa23.68■■□□□ 1.38
HMGCR-208ENST00000509431 C9orf84Q5VXU9 1444 aa23.67■■□□□ 1.38
HMGCR-208ENST00000509431 P3H3Q8IVL6 736 aa23.67■■□□□ 1.38
HMGCR-208ENST00000509431 PLEKHD1A6NEE1 506 aa23.64■■□□□ 1.37
HMGCR-208ENST00000509431 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.63■■□□□ 1.373e-9■□□□□ 10.4
HMGCR-208ENST00000509431 NUP153P49790 1475 aaKnown RBP23.62■■□□□ 1.37
HMGCR-208ENST00000509431 PRXQ9BXM0 1461 aa23.62■■□□□ 1.37
HMGCR-208ENST00000509431 SAMD9Q5K651 1589 aa23.6■■□□□ 1.37
HMGCR-208ENST00000509431 SCAPERQ9BY12 1400 aa23.58■■□□□ 1.36
HMGCR-208ENST00000509431 UBAP1LF5GYI3 381 aa23.57■■□□□ 1.36
HMGCR-208ENST00000509431 NCOA1Q15788 1441 aa23.57■■□□□ 1.36
HMGCR-208ENST00000509431 MED1Q15648 1581 aaPredicted RBP23.52■■□□□ 1.36
HMGCR-208ENST00000509431 C3P01024 1663 aa23.52■■□□□ 1.36
HMGCR-208ENST00000509431 TRAPPC8Q9Y2L5 1435 aa23.51■■□□□ 1.35
HMGCR-208ENST00000509431 PLCH2O75038 1416 aa23.49■■□□□ 1.35
HMGCR-208ENST00000509431 REREQ9P2R6 1566 aa23.45■■□□□ 1.34
HMGCR-208ENST00000509431 ESF1Q9H501 851 aaKnown RBP23.45■■□□□ 1.34
HMGCR-208ENST00000509431 ZNF518AQ6AHZ1 1483 aa23.43■■□□□ 1.34
HMGCR-208ENST00000509431 ZNF335Q9H4Z2 1342 aaPredicted RBP23.42■■□□□ 1.34
HMGCR-208ENST00000509431 CAMSAP1Q5T5Y3 1602 aa23.42■■□□□ 1.34
HMGCR-208ENST00000509431 EFCAB2Q5VUJ9 269 aa23.41■■□□□ 1.34
HMGCR-208ENST00000509431 KDM5CP41229 1560 aa23.4■■□□□ 1.34
HMGCR-208ENST00000509431 AGLP35573 1532 aa23.39■■□□□ 1.34
HMGCR-208ENST00000509431 CNTLNQ9NXG0 1405 aa23.39■■□□□ 1.33
HMGCR-208ENST00000509431 DIP2CQ9Y2E4 1556 aa23.37■■□□□ 1.33
HMGCR-208ENST00000509431 MYO5CQ9NQX4 1742 aa23.36■■□□□ 1.33
HMGCR-208ENST00000509431 HSPA1LP34931 641 aa23.36■■□□□ 1.33
HMGCR-208ENST00000509431 PHF23Q9BUL5 403 aaPredicted RBP23.36■■□□□ 1.33
HMGCR-208ENST00000509431 NPATQ14207 1427 aa23.35■■□□□ 1.33
HMGCR-208ENST00000509431 PKD2Q13563 968 aa23.35■■□□□ 1.33
HMGCR-208ENST00000509431 MYT1LQ9UL68 1186 aa23.33■■□□□ 1.33
HMGCR-208ENST00000509431 NCKAP5LQ9HCH0 1330 aa23.32■■□□□ 1.32
HMGCR-208ENST00000509431 PLA2R1Q13018 1463 aa23.31■■□□□ 1.32
HMGCR-208ENST00000509431 AFAP1Q8N556 730 aa23.3■■□□□ 1.32
HMGCR-208ENST00000509431 SCAF1Q9H7N4 1312 aaKnown RBP23.3■■□□□ 1.32
HMGCR-208ENST00000509431 TOM1O60784 492 aa23.29■■□□□ 1.32
HMGCR-208ENST00000509431 MLH3Q9UHC1 1453 aa23.29■■□□□ 1.32
HMGCR-208ENST00000509431 ABCA6Q8N139 1617 aa23.28■■□□□ 1.32
HMGCR-208ENST00000509431 MROH2AA6NES4 1674 aa23.28■■□□□ 1.32
HMGCR-208ENST00000509431 TCOF1Q13428 1488 aaKnown RBP23.25■■□□□ 1.31
HMGCR-208ENST00000509431 CDK13Q14004 1512 aaKnown RBP23.25■■□□□ 1.31
HMGCR-208ENST00000509431 PIP4K2BP78356 416 aa23.25■■□□□ 1.31
HMGCR-208ENST00000509431 ZNF142P52746 1687 aaPredicted RBP23.25■■□□□ 1.31
HMGCR-208ENST00000509431 SUPT6HQ7KZ85 1726 aaKnown RBP23.23■■□□□ 1.31
HMGCR-208ENST00000509431 PPP6R1Q9UPN7 881 aa23.22■■□□□ 1.31
HMGCR-208ENST00000509431 ARHGAP5Q13017 1502 aa23.22■■□□□ 1.31
HMGCR-208ENST00000509431 CPS1P31327 1500 aa23.2■■□□□ 1.3
HMGCR-208ENST00000509431 ZMYM3Q14202 1370 aa23.18■■□□□ 1.3
HMGCR-208ENST00000509431 RANGAP1P46060 587 aaPredicted RBP23.18■■□□□ 1.3
HMGCR-208ENST00000509431 MYO3AQ8NEV4 1616 aa23.18■■□□□ 1.3
HMGCR-208ENST00000509431 CDK11AQ9UQ88 783 aaPredicted RBP23.17■■□□□ 1.3
HMGCR-208ENST00000509431 CEP170BQ9Y4F5 1589 aaPredicted RBP23.17■■□□□ 1.3
HMGCR-208ENST00000509431 KIF14Q15058 1648 aa23.16■■□□□ 1.3
HMGCR-208ENST00000509431 CSRNP3Q8WYN3 585 aa23.14■■□□□ 1.29
HMGCR-208ENST00000509431 PTPRKQ15262 1439 aa23.14■■□□□ 1.29
HMGCR-208ENST00000509431 KIDINS220Q9ULH0 1771 aa23.11■■□□□ 1.29
HMGCR-208ENST00000509431 ABCC1P33527 1531 aa23.08■■□□□ 1.29
HMGCR-208ENST00000509431 SHANK2Q9UPX8 1470 aa23.08■■□□□ 1.29
HMGCR-208ENST00000509431 CDC42BPBQ9Y5S2 1711 aa23.08■■□□□ 1.28
HMGCR-208ENST00000509431 CLIP1P30622 1438 aa23.08■■□□□ 1.28
HMGCR-208ENST00000509431 TROQ12816 1431 aaPredicted RBP23.08■■□□□ 1.28
HMGCR-208ENST00000509431 ITSN2Q9NZM3 1697 aa23.07■■□□□ 1.28
HMGCR-208ENST00000509431 CLTCQ00610 1675 aaKnown RBP23.05■■□□□ 1.28
HMGCR-208ENST00000509431 POLR1AO95602 1720 aaPredicted RBP23.03■■□□□ 1.28
HMGCR-208ENST00000509431 A2ML1A8K2U0 1454 aa23.02■■□□□ 1.28
HMGCR-208ENST00000509431 PREX2Q70Z35 1606 aa23■■□□□ 1.27
HMGCR-208ENST00000509431 ALKQ9UM73 1620 aa23■■□□□ 1.27
HMGCR-208ENST00000509431 FMN1Q68DA7 1419 aa23■■□□□ 1.27
HMGCR-208ENST00000509431 ATP1B4Q9UN42 357 aaPredicted RBP23■■□□□ 1.27
HMGCR-208ENST00000509431 DNMT1P26358 1616 aaKnown RBP23■■□□□ 1.27
HMGCR-208ENST00000509431 RGS17Q9UGC6 210 aaPredicted RBP22.99■■□□□ 1.27
HMGCR-208ENST00000509431 NEURL4Q96JN8 1562 aa22.97■■□□□ 1.27
HMGCR-208ENST00000509431 SAMD9LQ8IVG5 1584 aa22.94■■□□□ 1.26
HMGCR-208ENST00000509431 VWDEQ8N2E2 1590 aa22.94■■□□□ 1.26
HMGCR-208ENST00000509431 EEA1Q15075 1411 aa22.92■■□□□ 1.26
HMGCR-208ENST00000509431 PLXNC1O60486 1568 aa22.91■■□□□ 1.26
HMGCR-208ENST00000509431 SPAG9O60271 1321 aaKnown RBP22.89■■□□□ 1.26
HMGCR-208ENST00000509431 ANKLE2Q86XL3 938 aa22.88■■□□□ 1.25
HMGCR-208ENST00000509431 RNF17Q9BXT8 1623 aaKnown RBP22.88■■□□□ 1.25
HMGCR-208ENST00000509431 A2MP01023 1474 aa22.87■■□□□ 1.25
HMGCR-208ENST00000509431 GGT6Q6P531 493 aa22.86■■□□□ 1.25
HMGCR-208ENST00000509431 SENP3Q9H4L4 574 aaPredicted RBP22.85■■□□□ 1.25
HMGCR-208ENST00000509431 ATP7AQ04656 1500 aa22.85■■□□□ 1.25
HMGCR-208ENST00000509431 MED14O60244 1454 aa22.85■■□□□ 1.25
HMGCR-208ENST00000509431 DEPDC5O75140 1603 aa22.84■■□□□ 1.25
HMGCR-208ENST00000509431 CDC42BPAQ5VT25 1732 aa22.84■■□□□ 1.25
HMGCR-208ENST00000509431 SYNMO15061 1565 aa22.84■■□□□ 1.25
HMGCR-208ENST00000509431 POTEAQ6S8J7 498 aa22.82■■□□□ 1.24
HMGCR-208ENST00000509431 NPHP4O75161 1426 aaPredicted RBP22.82■■□□□ 1.24
HMGCR-208ENST00000509431 TNRQ92752 1358 aa22.81■■□□□ 1.24
HMGCR-208ENST00000509431 LRRC7Q96NW7 1537 aa22.81■■□□□ 1.24
HMGCR-208ENST00000509431 INO80Q9ULG1 1556 aaPredicted RBP22.8■■□□□ 1.24
HMGCR-208ENST00000509431 LRRIQ1Q96JM4 1722 aa22.8■■□□□ 1.24
HMGCR-208ENST00000509431 THEMISQ8N1K5 641 aaPredicted RBP22.8■■□□□ 1.24
HMGCR-208ENST00000509431 SYCP2Q9BX26 1530 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms