RNA–Protein interactions for RNA: ENST00000506783.5

PHF3-208, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 3,700 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-208ENST00000506783 PTPRKQ15262 1439 aa12.92□□□□□ -0.34
PHF3-208ENST00000506783 ANP32AP39687 249 aaKnown RBP12.92□□□□□ -0.34
PHF3-208ENST00000506783 OSCARQ8IYS5 282 aa12.91□□□□□ -0.34
PHF3-208ENST00000506783 SLC4A3P48751 1232 aa12.91□□□□□ -0.34
PHF3-208ENST00000506783 PAK3O75914 559 aaPredicted RBP12.9□□□□□ -0.34
PHF3-208ENST00000506783 DAXXQ9UER7 740 aaPredicted RBP12.9□□□□□ -0.34
PHF3-208ENST00000506783 MAPKBP1O60336 1514 aa12.9□□□□□ -0.34
PHF3-208ENST00000506783 FGD6Q6ZV73 1430 aa12.89□□□□□ -0.35
PHF3-208ENST00000506783 KIF7Q2M1P5 1343 aa12.89□□□□□ -0.35
PHF3-208ENST00000506783 ZBTB47Q9UFB7 747 aaPredicted RBP12.89□□□□□ -0.35
PHF3-208ENST00000506783 DNMBPQ6XZF7 1577 aa12.88□□□□□ -0.35
PHF3-208ENST00000506783 RGS3P49796 1198 aa12.87□□□□□ -0.35
PHF3-208ENST00000506783 AKNAQ7Z591 1439 aa12.86□□□□□ -0.35
PHF3-208ENST00000506783 TRHP20396 242 aaPredicted RBP12.86□□□□□ -0.35
PHF3-208ENST00000506783 DEKP35659 375 aaKnown RBP12.86□□□□□ -0.35
PHF3-208ENST00000506783 CDCA7LQ96GN5 454 aa12.86□□□□□ -0.35
PHF3-208ENST00000506783 GRIN2BQ13224 1484 aa12.86□□□□□ -0.35
PHF3-208ENST00000506783 SNAPC4Q5SXM2 1469 aa12.85□□□□□ -0.35
PHF3-208ENST00000506783 CARMIL2Q6F5E8 1435 aa12.85□□□□□ -0.35
PHF3-208ENST00000506783 EXOC6Q8TAG9 804 aa12.85□□□□□ -0.35
PHF3-208ENST00000506783 FMN1Q68DA7 1419 aa12.84□□□□□ -0.35
PHF3-208ENST00000506783 TIMELESSQ9UNS1 1208 aa12.83□□□□□ -0.36
PHF3-208ENST00000506783 NUP155O75694 1391 aa12.83□□□□□ -0.36
PHF3-208ENST00000506783 TIAM1Q13009 1591 aa12.82□□□□□ -0.36
PHF3-208ENST00000506783 PTPRGP23470 1445 aa12.82□□□□□ -0.36
PHF3-208ENST00000506783 CCDC146Q8IYE0 955 aa12.82□□□□□ -0.36
PHF3-208ENST00000506783 NOP58Q9Y2X3 529 aaKnown RBP12.82□□□□□ -0.36
PHF3-208ENST00000506783 NCOA2Q15596 1464 aa12.81□□□□□ -0.36
PHF3-208ENST00000506783 IFT140Q96RY7 1462 aa12.81□□□□□ -0.36
PHF3-208ENST00000506783 NUTM2DQ5VT03 806 aaPredicted RBP12.81□□□□□ -0.36
PHF3-208ENST00000506783 ABCA10Q8WWZ4 1543 aa12.81□□□□□ -0.36
PHF3-208ENST00000506783 NBPF1Q3BBV0 1214 aa12.81□□□□□ -0.36
PHF3-208ENST00000506783 ERICH3Q5RHP9 1530 aa12.8□□□□□ -0.36
PHF3-208ENST00000506783 CANXP27824 592 aaKnown RBP12.8□□□□□ -0.36
PHF3-208ENST00000506783 SAFB2Q14151 953 aaKnown RBP eCLIP12.8□□□□□ -0.366e-6■■■□□ 18.1
PHF3-208ENST00000506783 PCF11O94913 1555 aaKnown RBP12.79□□□□□ -0.36
PHF3-208ENST00000506783 NAIPQ13075 1403 aa12.78□□□□□ -0.36
PHF3-208ENST00000506783 CCDC7Q96M83 1385 aa12.78□□□□□ -0.36
PHF3-208ENST00000506783 KIF21AQ7Z4S6 1674 aa12.77□□□□□ -0.36
PHF3-208ENST00000506783 UACAQ9BZF9 1416 aa12.77□□□□□ -0.37
PHF3-208ENST00000506783 CDK13Q14004 1512 aaKnown RBP12.76□□□□□ -0.37
PHF3-208ENST00000506783 MLECQ14165 292 aa12.76□□□□□ -0.37
PHF3-208ENST00000506783 SPRYD3Q8NCJ5 442 aa12.75□□□□□ -0.37
PHF3-208ENST00000506783 MYOM3Q5VTT5 1437 aa12.75□□□□□ -0.37
PHF3-208ENST00000506783 NEFMP07197 916 aa12.75□□□□□ -0.37
PHF3-208ENST00000506783 PRG4Q92954 1404 aaPredicted RBP12.75□□□□□ -0.37
PHF3-208ENST00000506783 FRAT1Q92837 279 aaPredicted RBP12.74□□□□□ -0.37
PHF3-208ENST00000506783 USP47Q96K76 1375 aa12.74□□□□□ -0.37
PHF3-208ENST00000506783 NUDCQ9Y266 331 aa12.74□□□□□ -0.37
PHF3-208ENST00000506783 EIF5BO60841 1220 aaKnown RBP12.73□□□□□ -0.37
PHF3-208ENST00000506783 WDR43Q15061 677 aaKnown RBP eCLIP12.73□□□□□ -0.37
PHF3-208ENST00000506783 RCAN3Q9UKA8 241 aa12.73□□□□□ -0.37
PHF3-208ENST00000506783 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.73□□□□□ -0.37
PHF3-208ENST00000506783 CASKIN1Q8WXD9 1431 aa12.72□□□□□ -0.37
PHF3-208ENST00000506783 PANK3Q9H999 370 aa12.72□□□□□ -0.37
PHF3-208ENST00000506783 RRP7AQ9Y3A4 280 aaKnown RBP12.71□□□□□ -0.37
PHF3-208ENST00000506783 BCL2L13Q9BXK5 485 aa12.71□□□□□ -0.37
PHF3-208ENST00000506783 PLEKHG5O94827 1062 aa12.7□□□□□ -0.38
PHF3-208ENST00000506783 ROCK2O75116 1388 aaKnown RBP12.7□□□□□ -0.38
PHF3-208ENST00000506783 BIVM-ERCC5R4GMW8 1640 aa12.7□□□□□ -0.38
PHF3-208ENST00000506783 ZBED9Q6R2W3 1325 aa12.7□□□□□ -0.38
PHF3-208ENST00000506783 GGT6Q6P531 493 aa12.7□□□□□ -0.38
PHF3-208ENST00000506783 ESF1Q9H501 851 aaKnown RBP12.69□□□□□ -0.38
PHF3-208ENST00000506783 ARID4BQ4LE39 1312 aaPredicted RBP12.69□□□□□ -0.38
PHF3-208ENST00000506783 CLUAP1Q96AJ1 413 aa12.68□□□□□ -0.38
PHF3-208ENST00000506783 KNSTRNQ9Y448 316 aa12.68□□□□□ -0.38
PHF3-208ENST00000506783 HFM1A2PYH4 1435 aa12.68□□□□□ -0.38
PHF3-208ENST00000506783 CRBNQ96SW2 442 aa12.67□□□□□ -0.38
PHF3-208ENST00000506783 PRDM2Q13029 1718 aa12.66□□□□□ -0.38
PHF3-208ENST00000506783 PPM1GO15355 546 aaPredicted RBP12.66□□□□□ -0.38
PHF3-208ENST00000506783 C20orf194Q5TEA3 1177 aa12.66□□□□□ -0.38
PHF3-208ENST00000506783 CNTLNQ9NXG0 1405 aa12.66□□□□□ -0.38
PHF3-208ENST00000506783 EFCAB2Q5VUJ9 269 aa12.65□□□□□ -0.38
PHF3-208ENST00000506783 STAG3Q9UJ98 1225 aa12.65□□□□□ -0.38
PHF3-208ENST00000506783 PNISRQ8TF01 805 aaKnown RBP12.64□□□□□ -0.39
PHF3-208ENST00000506783 PLB1Q6P1J6 1458 aa12.64□□□□□ -0.39
PHF3-208ENST00000506783 GRIN2AQ12879 1464 aa12.63□□□□□ -0.39
PHF3-208ENST00000506783 AFAP1Q8N556 730 aa12.63□□□□□ -0.39
PHF3-208ENST00000506783 IL27Q8NEV9 243 aa12.63□□□□□ -0.39
PHF3-208ENST00000506783 PDE4AP27815 886 aa12.62□□□□□ -0.39
PHF3-208ENST00000506783 IPO9Q96P70 1041 aaKnown RBP12.62□□□□□ -0.39
PHF3-208ENST00000506783 ADAMTS8Q9UP79 889 aa12.62□□□□□ -0.39
PHF3-208ENST00000506783 RRP1P56182 461 aaKnown RBP12.62□□□□□ -0.39
PHF3-208ENST00000506783 FAM69CQ0P6D2 419 aa12.62□□□□□ -0.39
PHF3-208ENST00000506783 SLKQ9H2G2 1235 aaPredicted RBP12.61□□□□□ -0.39
PHF3-208ENST00000506783 FYCO1Q9BQS8 1478 aa12.61□□□□□ -0.39
PHF3-208ENST00000506783 SYNJ2O15056 1496 aa12.61□□□□□ -0.39
PHF3-208ENST00000506783 SLC24A1O60721 1099 aa12.61□□□□□ -0.39
PHF3-208ENST00000506783 KIAA0586Q9BVV6 1533 aa12.6□□□□□ -0.39
PHF3-208ENST00000506783 STK26Q9P289 416 aa12.6□□□□□ -0.39
PHF3-208ENST00000506783 KIF3BO15066 747 aa12.6□□□□□ -0.39
PHF3-208ENST00000506783 APAF1O14727 1248 aa12.59□□□□□ -0.39
PHF3-208ENST00000506783 FANCIQ9NVI1 1328 aa12.59□□□□□ -0.39
PHF3-208ENST00000506783 ANKRD30BQ9BXX2 1392 aa12.57□□□□□ -0.4
PHF3-208ENST00000506783 TRAK1Q9UPV9 953 aa12.57□□□□□ -0.4
PHF3-208ENST00000506783 ANKRD30AQ9BXX3 1397 aa12.57□□□□□ -0.4
PHF3-208ENST00000506783 NLRP13Q86W25 1043 aa12.57□□□□□ -0.4
PHF3-208ENST00000506783 TMF1P82094 1093 aa12.56□□□□□ -0.4
PHF3-208ENST00000506783 KTN1Q86UP2 1357 aaKnown RBP12.56□□□□□ -0.4
PHF3-208ENST00000506783 SOX12O15370 315 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms