RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 DENND4BO75064 1496 aaPredicted RBP6.4□□□□□ -1.39
TCOF1-208ENST00000506063 HECW1Q76N89 1606 aa6.39□□□□□ -1.39
TCOF1-208ENST00000506063 MLECQ14165 292 aa6.39□□□□□ -1.39
TCOF1-208ENST00000506063 POTEAQ6S8J7 498 aa6.38□□□□□ -1.39
TCOF1-208ENST00000506063 CARMIL1Q5VZK9 1371 aa6.38□□□□□ -1.39
TCOF1-208ENST00000506063 ATP10BO94823 1461 aa6.38□□□□□ -1.39
TCOF1-208ENST00000506063 MAGI2Q86UL8 1455 aa6.38□□□□□ -1.39
TCOF1-208ENST00000506063 TCOF1Q13428 1488 aaKnown RBP6.36□□□□□ -1.39
TCOF1-208ENST00000506063 ZNF142P52746 1687 aaPredicted RBP6.36□□□□□ -1.39
TCOF1-208ENST00000506063 KIF27Q86VH2 1401 aa6.35□□□□□ -1.39
TCOF1-208ENST00000506063 PIP4K2BP78356 416 aa6.35□□□□□ -1.39
TCOF1-208ENST00000506063 ATP10AO60312 1499 aa6.34□□□□□ -1.39
TCOF1-208ENST00000506063 C9orf84Q5VXU9 1444 aa6.34□□□□□ -1.39
TCOF1-208ENST00000506063 TRAPPC8Q9Y2L5 1435 aa6.34□□□□□ -1.39
TCOF1-208ENST00000506063 NCKAP5LQ9HCH0 1330 aa6.34□□□□□ -1.39
TCOF1-208ENST00000506063 CFAP74Q9C0B2 1584 aa6.34□□□□□ -1.39
TCOF1-208ENST00000506063 PLA2R1Q13018 1463 aa6.34□□□□□ -1.4
TCOF1-208ENST00000506063 SUPT6HQ7KZ85 1726 aaKnown RBP6.33□□□□□ -1.4
TCOF1-208ENST00000506063 CPS1P31327 1500 aa6.33□□□□□ -1.4
TCOF1-208ENST00000506063 RAPGEF2Q9Y4G8 1499 aa6.33□□□□□ -1.4
TCOF1-208ENST00000506063 CTTNBP2Q8WZ74 1663 aa6.33□□□□□ -1.4
TCOF1-208ENST00000506063 SCAF1Q9H7N4 1312 aaKnown RBP6.32□□□□□ -1.4
TCOF1-208ENST00000506063 TOM1O60784 492 aa6.32□□□□□ -1.4
TCOF1-208ENST00000506063 UPF1Q92900 1129 aaKnown RBP eCLIP6.32□□□□□ -1.4
TCOF1-208ENST00000506063 NEURL4Q96JN8 1562 aa6.31□□□□□ -1.4
TCOF1-208ENST00000506063 REREQ9P2R6 1566 aa6.31□□□□□ -1.4
TCOF1-208ENST00000506063 STRCP1A6NGW2 1772 aa6.31□□□□□ -1.4
TCOF1-208ENST00000506063 MYO3AQ8NEV4 1616 aa6.31□□□□□ -1.4
TCOF1-208ENST00000506063 VWDEQ8N2E2 1590 aa6.31□□□□□ -1.4
TCOF1-208ENST00000506063 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.3□□□□□ -1.4
TCOF1-208ENST00000506063 DIP2CQ9Y2E4 1556 aa6.3□□□□□ -1.4
TCOF1-208ENST00000506063 POLR1AO95602 1720 aaPredicted RBP6.3□□□□□ -1.4
TCOF1-208ENST00000506063 MROH2AA6NES4 1674 aa6.3□□□□□ -1.4
TCOF1-208ENST00000506063 SHANK2Q9UPX8 1470 aa6.29□□□□□ -1.4
TCOF1-208ENST00000506063 ARID3CA6NKF2 412 aa6.29□□□□□ -1.4
TCOF1-208ENST00000506063 NPATQ14207 1427 aa6.29□□□□□ -1.4
TCOF1-208ENST00000506063 PTPRKQ15262 1439 aa6.29□□□□□ -1.4
TCOF1-208ENST00000506063 CEP170BQ9Y4F5 1589 aaPredicted RBP6.29□□□□□ -1.4
TCOF1-208ENST00000506063 AGLP35573 1532 aa6.29□□□□□ -1.4
TCOF1-208ENST00000506063 ABCA6Q8N139 1617 aa6.28□□□□□ -1.4
TCOF1-208ENST00000506063 KDM5CP41229 1560 aa6.28□□□□□ -1.4
TCOF1-208ENST00000506063 PKD2Q13563 968 aa6.28□□□□□ -1.4
TCOF1-208ENST00000506063 GOLGA3Q08378 1498 aa6.28□□□□□ -1.4
TCOF1-208ENST00000506063 XIRP1Q702N8 1843 aaKnown RBP6.27□□□□□ -1.41
TCOF1-208ENST00000506063 RNF17Q9BXT8 1623 aaKnown RBP6.27□□□□□ -1.41
TCOF1-208ENST00000506063 SCAPERQ9BY12 1400 aa6.26□□□□□ -1.41
TCOF1-208ENST00000506063 RAPGEF6Q8TEU7 1601 aa6.26□□□□□ -1.41
TCOF1-208ENST00000506063 PPP6R1Q9UPN7 881 aa6.26□□□□□ -1.41
TCOF1-208ENST00000506063 NUP153P49790 1475 aaKnown RBP6.25□□□□□ -1.41
TCOF1-208ENST00000506063 DNMT1P26358 1616 aaKnown RBP6.25□□□□□ -1.41
TCOF1-208ENST00000506063 LRRC7Q96NW7 1537 aa6.25□□□□□ -1.41
TCOF1-208ENST00000506063 SENP3Q9H4L4 574 aaPredicted RBP6.24□□□□□ -1.41
TCOF1-208ENST00000506063 SETBP1Q9Y6X0 1596 aa6.23□□□□□ -1.41
TCOF1-208ENST00000506063 CNTLNQ9NXG0 1405 aa6.23□□□□□ -1.41
TCOF1-208ENST00000506063 SYNMO15061 1565 aa6.23□□□□□ -1.41
TCOF1-208ENST00000506063 KIDINS220Q9ULH0 1771 aa6.21□□□□□ -1.41
TCOF1-208ENST00000506063 CLTCQ00610 1675 aaKnown RBP6.21□□□□□ -1.42
TCOF1-208ENST00000506063 PLCH2O75038 1416 aa6.21□□□□□ -1.42
TCOF1-208ENST00000506063 SAMD9Q5K651 1589 aa6.21□□□□□ -1.42
TCOF1-208ENST00000506063 ZNF518AQ6AHZ1 1483 aa6.21□□□□□ -1.42
TCOF1-208ENST00000506063 ZMYM3Q14202 1370 aa6.2□□□□□ -1.42
TCOF1-208ENST00000506063 MYO5CQ9NQX4 1742 aa6.2□□□□□ -1.42
TCOF1-208ENST00000506063 EP400Q96L91 3159 aa6.2□□□□□ -1.42
TCOF1-208ENST00000506063 A2ML1A8K2U0 1454 aa6.2□□□□□ -1.42
TCOF1-208ENST00000506063 MLH3Q9UHC1 1453 aa6.2□□□□□ -1.42
TCOF1-208ENST00000506063 DEPDC5O75140 1603 aa6.19□□□□□ -1.42
TCOF1-208ENST00000506063 IFFO2Q5TF58 517 aa6.19□□□□□ -1.42
TCOF1-208ENST00000506063 MED14O60244 1454 aa6.19□□□□□ -1.42
TCOF1-208ENST00000506063 LRP6O75581 1613 aa6.18□□□□□ -1.42
TCOF1-208ENST00000506063 FAM135BQ49AJ0 1406 aa6.18□□□□□ -1.42
TCOF1-208ENST00000506063 IQGAP1P46940 1657 aa6.18□□□□□ -1.42
TCOF1-208ENST00000506063 ZC3H13Q5T200 1668 aaKnown RBP6.18□□□□□ -1.42
TCOF1-208ENST00000506063 ROBO1Q9Y6N7 1651 aa6.18□□□□□ -1.42
TCOF1-208ENST00000506063 CDK12Q9NYV4 1490 aaPredicted RBP6.18□□□□□ -1.42
TCOF1-208ENST00000506063 AFAP1Q8N556 730 aa6.18□□□□□ -1.42
TCOF1-208ENST00000506063 LRP5O75197 1615 aa6.17□□□□□ -1.42
TCOF1-208ENST00000506063 ITSN2Q9NZM3 1697 aa6.17□□□□□ -1.42
TCOF1-208ENST00000506063 CDK13Q14004 1512 aaKnown RBP6.15□□□□□ -1.42
TCOF1-208ENST00000506063 TRIM52Q96A61 297 aa6.15□□□□□ -1.42
TCOF1-208ENST00000506063 CDC42BPBQ9Y5S2 1711 aa6.15□□□□□ -1.42
TCOF1-208ENST00000506063 PLXNC1O60486 1568 aa6.14□□□□□ -1.43
TCOF1-208ENST00000506063 COL16A1Q07092 1604 aaPredicted RBP6.14□□□□□ -1.43
TCOF1-208ENST00000506063 P3H3Q8IVL6 736 aa6.14□□□□□ -1.43
TCOF1-208ENST00000506063 NPHP4O75161 1426 aaPredicted RBP6.14□□□□□ -1.43
TCOF1-208ENST00000506063 ABCC1P33527 1531 aa6.14□□□□□ -1.43
TCOF1-208ENST00000506063 KIF14Q15058 1648 aa6.14□□□□□ -1.43
TCOF1-208ENST00000506063 PHLPP1O60346 1717 aa6.13□□□□□ -1.43
TCOF1-208ENST00000506063 PLEKHD1A6NEE1 506 aa6.13□□□□□ -1.43
TCOF1-208ENST00000506063 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.12□□□□□ -1.43
TCOF1-208ENST00000506063 RGS12O14924 1447 aa6.12□□□□□ -1.43
TCOF1-208ENST00000506063 HNRNPUL2Q1KMD3 747 aaKnown RBP6.12□□□□□ -1.43
TCOF1-208ENST00000506063 PRXQ9BXM0 1461 aa6.12□□□□□ -1.43
TCOF1-208ENST00000506063 ESF1Q9H501 851 aaKnown RBP6.12□□□□□ -1.43
TCOF1-208ENST00000506063 MAP3K1Q13233 1512 aa6.11□□□□□ -1.43
TCOF1-208ENST00000506063 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.11□□□□□ -1.43
TCOF1-208ENST00000506063 EFCAB2Q5VUJ9 269 aa6.11□□□□□ -1.43
TCOF1-208ENST00000506063 SHPRHQ149N8 1683 aa6.1□□□□□ -1.43
TCOF1-208ENST00000506063 JCADQ9P266 1359 aa6.1□□□□□ -1.43
TCOF1-208ENST00000506063 RBM33Q96EV2 1170 aaKnown RBP6.1□□□□□ -1.43
TCOF1-208ENST00000506063 ARHGAP5Q13017 1502 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms