RNA–Protein interactions for RNA: ENST00000504011.5

PDLIM3-204, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 2,819 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-204ENST00000504011 ABCC5O15440 1437 aa21.6■■□□□ 1.05
PDLIM3-204ENST00000504011 DAPK1P53355 1430 aa21.6■■□□□ 1.05
PDLIM3-204ENST00000504011 L3MBTL2Q969R5 705 aa21.6■■□□□ 1.05
PDLIM3-204ENST00000504011 PLEKHD1A6NEE1 506 aa21.56■■□□□ 1.04
PDLIM3-204ENST00000504011 CARMIL2Q6F5E8 1435 aa21.56■■□□□ 1.04
PDLIM3-204ENST00000504011 CNGB1Q14028 1251 aaPredicted RBP21.55■■□□□ 1.04
PDLIM3-204ENST00000504011 ZNF326Q5BKZ1 582 aaKnown RBP21.55■■□□□ 1.04
PDLIM3-204ENST00000504011 ANP32CO43423 234 aa21.54■■□□□ 1.04
PDLIM3-204ENST00000504011 HSPA5P11021 654 aaKnown RBP21.54■■□□□ 1.04
PDLIM3-204ENST00000504011 TROQ12816 1431 aaPredicted RBP21.53■■□□□ 1.04
PDLIM3-204ENST00000504011 KIF14Q15058 1648 aa21.53■■□□□ 1.04
PDLIM3-204ENST00000504011 HNRNPMP52272 730 aaKnown RBP eCLIP21.49■■□□□ 1.03
PDLIM3-204ENST00000504011 NUP160Q12769 1436 aa21.49■■□□□ 1.03
PDLIM3-204ENST00000504011 GPATCH8Q9UKJ3 1502 aaKnown RBP21.48■■□□□ 1.03
PDLIM3-204ENST00000504011 CAMSAP2Q08AD1 1489 aa21.48■■□□□ 1.03
PDLIM3-204ENST00000504011 NBPF8Q3BBV2 869 aa21.47■■□□□ 1.03
PDLIM3-204ENST00000504011 GCC2Q8IWJ2 1684 aa21.47■■□□□ 1.03
PDLIM3-204ENST00000504011 KDM5BQ9UGL1 1544 aa21.47■■□□□ 1.03
PDLIM3-204ENST00000504011 BCANQ96GW7 911 aa21.45■■□□□ 1.02
PDLIM3-204ENST00000504011 POLR3GLQ9BT43 218 aa21.44■■□□□ 1.02
PDLIM3-204ENST00000504011 WASHC2AQ641Q2 1341 aa21.44■■□□□ 1.02
PDLIM3-204ENST00000504011 C11orf95C9JLR9 678 aaPredicted RBP21.43■■□□□ 1.02
PDLIM3-204ENST00000504011 ATP10BO94823 1461 aa21.43■■□□□ 1.02
PDLIM3-204ENST00000504011 EIF4G2P78344 907 aaKnown RBP eCLIP21.42■■□□□ 1.02
PDLIM3-204ENST00000504011 SUPT16HQ9Y5B9 1047 aaKnown RBP21.42■■□□□ 1.02
PDLIM3-204ENST00000504011 PKD2Q13563 968 aa21.42■■□□□ 1.02
PDLIM3-204ENST00000504011 DNMT1P26358 1616 aaKnown RBP21.42■■□□□ 1.02
PDLIM3-204ENST00000504011 PTPRGP23470 1445 aa21.41■■□□□ 1.02
PDLIM3-204ENST00000504011 AKNAQ7Z591 1439 aa21.41■■□□□ 1.02
PDLIM3-204ENST00000504011 ANKRD30BQ9BXX2 1392 aa21.4■■□□□ 1.02
PDLIM3-204ENST00000504011 NCOA1Q15788 1441 aa21.39■■□□□ 1.02
PDLIM3-204ENST00000504011 ROCK1Q13464 1354 aa21.39■■□□□ 1.02
PDLIM3-204ENST00000504011 TSPY4P0CV99 314 aa21.37■■□□□ 1.01
PDLIM3-204ENST00000504011 TSPY10P0CW01 314 aa21.37■■□□□ 1.01
PDLIM3-204ENST00000504011 KDM2AQ9Y2K7 1162 aa21.34■■□□□ 1.01
PDLIM3-204ENST00000504011 NUP155O75694 1391 aa21.32■■□□□ 1
PDLIM3-204ENST00000504011 ANKRD30AQ9BXX3 1397 aa21.32■■□□□ 1
PDLIM3-204ENST00000504011 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.32■■□□□ 1
PDLIM3-204ENST00000504011 CCDC184Q52MB2 194 aa21.31■■□□□ 1
PDLIM3-204ENST00000504011 ANKRD50Q9ULJ7 1429 aa21.31■■□□□ 1
PDLIM3-204ENST00000504011 PZPP20742 1482 aa21.3■■□□□ 1
PDLIM3-204ENST00000504011 ABCA8O94911 1581 aa21.3■■□□□ 1
PDLIM3-204ENST00000504011 RPRD2Q5VT52 1461 aaKnown RBP21.29■■□□□ 1
PDLIM3-204ENST00000504011 FKBP8Q14318 412 aa21.28■■□□□ 1
PDLIM3-204ENST00000504011 ERCC6L2Q5T890 1561 aa21.27■■□□□ 1
PDLIM3-204ENST00000504011 SENP3-EIF4A1A0A087X0R7 540 aa21.27■■□□□ 1
PDLIM3-204ENST00000504011 C9orf84Q5VXU9 1444 aa21.27■■□□□ 1
PDLIM3-204ENST00000504011 CCER2I3L3R5 266 aa21.27■□□□□ 0.99
PDLIM3-204ENST00000504011 HNRNPUQ00839 825 aaKnown RBP eCLIP21.26■□□□□ 0.99
PDLIM3-204ENST00000504011 PELP1Q8IZL8 1130 aaKnown RBP21.25■□□□□ 0.99
PDLIM3-204ENST00000504011 ITSN2Q9NZM3 1697 aa21.25■□□□□ 0.99
PDLIM3-204ENST00000504011 ABCC10Q5T3U5 1492 aa21.25■□□□□ 0.99
PDLIM3-204ENST00000504011 CHD1O14646 1710 aa21.24■□□□□ 0.99
PDLIM3-204ENST00000504011 CDC42BPAQ5VT25 1732 aa21.24■□□□□ 0.99
PDLIM3-204ENST00000504011 TEX14Q8IWB6 1497 aa21.23■□□□□ 0.99
PDLIM3-204ENST00000504011 KIF15Q9NS87 1388 aa21.23■□□□□ 0.99
PDLIM3-204ENST00000504011 RGL3Q3MIN7 710 aa21.22■□□□□ 0.99
PDLIM3-204ENST00000504011 FAM9BQ8IZU0 186 aa21.22■□□□□ 0.99
PDLIM3-204ENST00000504011 KIF7Q2M1P5 1343 aa21.2■□□□□ 0.98
PDLIM3-204ENST00000504011 KIAA1107Q9UPP5 1409 aa21.2■□□□□ 0.98
PDLIM3-204ENST00000504011 ADCY10Q96PN6 1610 aa21.19■□□□□ 0.98
PDLIM3-204ENST00000504011 DCAF11Q8TEB1 546 aa21.19■□□□□ 0.98
PDLIM3-204ENST00000504011 CCDC7Q96M83 1385 aa21.18■□□□□ 0.98
PDLIM3-204ENST00000504011 IRX6P78412 446 aaPredicted RBP21.17■□□□□ 0.98
PDLIM3-204ENST00000504011 ADGRL2O95490 1459 aa21.15■□□□□ 0.98
PDLIM3-204ENST00000504011 ADGBQ8N7X0 1667 aa21.14■□□□□ 0.97
PDLIM3-204ENST00000504011 MRS2Q9HD23 443 aa21.13■□□□□ 0.97
PDLIM3-204ENST00000504011 PRKRIP1Q9H875 184 aaPredicted RBP21.12■□□□□ 0.97
PDLIM3-204ENST00000504011 CROCC2H7BZ55 1655 aa21.12■□□□□ 0.97
PDLIM3-204ENST00000504011 MBD5Q9P267 1494 aa21.12■□□□□ 0.97
PDLIM3-204ENST00000504011 CARD11Q9BXL7 1154 aa21.12■□□□□ 0.97
PDLIM3-204ENST00000504011 ARHGAP5Q13017 1502 aa21.12■□□□□ 0.97
PDLIM3-204ENST00000504011 CNTLNQ9NXG0 1405 aa21.11■□□□□ 0.97
PDLIM3-204ENST00000504011 USP47Q96K76 1375 aa21.11■□□□□ 0.97
PDLIM3-204ENST00000504011 SAMD9LQ8IVG5 1584 aa21.09■□□□□ 0.97
PDLIM3-204ENST00000504011 SYCP2Q9BX26 1530 aa21.09■□□□□ 0.97
PDLIM3-204ENST00000504011 TTC37Q6PGP7 1564 aa21.08■□□□□ 0.96
PDLIM3-204ENST00000504011 NEFLP07196 543 aa21.07■□□□□ 0.96
PDLIM3-204ENST00000504011 SPATA31E1Q6ZUB1 1445 aa21.07■□□□□ 0.96
PDLIM3-204ENST00000504011 CDC42BPBQ9Y5S2 1711 aa21.07■□□□□ 0.96
PDLIM3-204ENST00000504011 MYT1LQ9UL68 1186 aa21.06■□□□□ 0.96
PDLIM3-204ENST00000504011 ST20-MTHFSA0A0A6YYL1 179 aa21.05■□□□□ 0.96
PDLIM3-204ENST00000504011 CCDC141Q6ZP82 1450 aa21.05■□□□□ 0.96
PDLIM3-204ENST00000504011 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.04■□□□□ 0.96
PDLIM3-204ENST00000504011 AFAP1Q8N556 730 aa21.04■□□□□ 0.96
PDLIM3-204ENST00000504011 NBPF1Q3BBV0 1214 aa21■□□□□ 0.95
PDLIM3-204ENST00000504011 SHANK2Q9UPX8 1470 aa21■□□□□ 0.95
PDLIM3-204ENST00000504011 PLEKHH2Q8IVE3 1493 aa21■□□□□ 0.95
PDLIM3-204ENST00000504011 ABCC2Q92887 1545 aa20.97■□□□□ 0.95
PDLIM3-204ENST00000504011 PREX2Q70Z35 1606 aa20.97■□□□□ 0.95
PDLIM3-204ENST00000504011 ARHGEF12Q9NZN5 1544 aa20.97■□□□□ 0.95
PDLIM3-204ENST00000504011 FAM135AQ9P2D6 1515 aa20.96■□□□□ 0.95
PDLIM3-204ENST00000504011 RSPH4AQ5TD94 716 aa20.96■□□□□ 0.95
PDLIM3-204ENST00000504011 EFCAB2Q5VUJ9 269 aa20.96■□□□□ 0.95
PDLIM3-204ENST00000504011 ROCK2O75116 1388 aaKnown RBP20.95■□□□□ 0.95
PDLIM3-204ENST00000504011 BCORL1Q5H9F3 1711 aa20.95■□□□□ 0.94
PDLIM3-204ENST00000504011 CCDC144AA2RUR9 1427 aa20.94■□□□□ 0.94
PDLIM3-204ENST00000504011 SHROOM2Q13796 1616 aa20.93■□□□□ 0.94
PDLIM3-204ENST00000504011 TSHZ2Q9NRE2 1034 aa20.93■□□□□ 0.94
PDLIM3-204ENST00000504011 ARHGEF5Q12774 1597 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms