RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 ACIN1Q9UKV3 1341 aaKnown RBP32.41■■■□□ 2.78
PCDH1-204ENST00000503492 CFDP1Q9UEE9 299 aaPredicted RBP32.38■■■□□ 2.77
PCDH1-204ENST00000503492 CAMSAP2Q08AD1 1489 aa32.37■■■□□ 2.77
PCDH1-204ENST00000503492 PTPRGP23470 1445 aa32.37■■■□□ 2.77
PCDH1-204ENST00000503492 DENND4BO75064 1496 aaPredicted RBP32.37■■■□□ 2.77
PCDH1-204ENST00000503492 CENPBP07199 599 aaPredicted RBP32.37■■■□□ 2.77
PCDH1-204ENST00000503492 SCAF1Q9H7N4 1312 aaKnown RBP32.36■■■□□ 2.77
PCDH1-204ENST00000503492 PLEKHD1A6NEE1 506 aa32.35■■■□□ 2.77
PCDH1-204ENST00000503492 TONSLQ96HA7 1378 aa32.35■■■□□ 2.77
PCDH1-204ENST00000503492 TRIM52Q96A61 297 aa32.34■■■□□ 2.77
PCDH1-204ENST00000503492 SHROOM2Q13796 1616 aa32.32■■■□□ 2.76
PCDH1-204ENST00000503492 ABCC10Q5T3U5 1492 aa32.29■■■□□ 2.76
PCDH1-204ENST00000503492 CDC42BPAQ5VT25 1732 aa32.26■■■□□ 2.75
PCDH1-204ENST00000503492 MPHOSPH9Q99550 1183 aa32.26■■■□□ 2.75
PCDH1-204ENST00000503492 ZNF777Q9ULD5 760 aaPredicted RBP32.25■■■□□ 2.75
PCDH1-204ENST00000503492 YTHDC1Q96MU7 727 aaKnown RBP32.24■■■□□ 2.75
PCDH1-204ENST00000503492 KDM5BQ9UGL1 1544 aa32.2■■■□□ 2.75
PCDH1-204ENST00000503492 CROCC2H7BZ55 1655 aa32.2■■■□□ 2.75
PCDH1-204ENST00000503492 ADGBQ8N7X0 1667 aa32.2■■■□□ 2.74
PCDH1-204ENST00000503492 NCOA1Q15788 1441 aa32.18■■■□□ 2.74
PCDH1-204ENST00000503492 ERCC6L2Q5T890 1561 aa32.17■■■□□ 2.74
PCDH1-204ENST00000503492 ADGRL2O95490 1459 aa32.16■■■□□ 2.74
PCDH1-204ENST00000503492 FOXD1Q16676 465 aa32.11■■■□□ 2.73
PCDH1-204ENST00000503492 CLASP1Q7Z460 1538 aa32.07■■■□□ 2.73
PCDH1-204ENST00000503492 HIRIP3Q9BW71 556 aaPredicted RBP32.07■■■□□ 2.72
PCDH1-204ENST00000503492 ANKRD30AQ9BXX3 1397 aa32.06■■■□□ 2.72
PCDH1-204ENST00000503492 ANKRD30BQ9BXX2 1392 aa32.05■■■□□ 2.72
PCDH1-204ENST00000503492 SHANK2Q9UPX8 1470 aa32.04■■■□□ 2.72
PCDH1-204ENST00000503492 ABCC2Q92887 1545 aa32.04■■■□□ 2.72
PCDH1-204ENST00000503492 SLC4A1APQ9BWU0 796 aaKnown RBP32.03■■■□□ 2.72
PCDH1-204ENST00000503492 PZPP20742 1482 aa32.02■■■□□ 2.72
PCDH1-204ENST00000503492 DDX10Q13206 875 aaKnown RBP32.01■■■□□ 2.72
PCDH1-204ENST00000503492 C9orf84Q5VXU9 1444 aa32■■■□□ 2.71
PCDH1-204ENST00000503492 CDC42BPBQ9Y5S2 1711 aa32■■■□□ 2.71
PCDH1-204ENST00000503492 PREX2Q70Z35 1606 aa32■■■□□ 2.71
PCDH1-204ENST00000503492 RPRD2Q5VT52 1461 aaKnown RBP31.97■■■□□ 2.71
PCDH1-204ENST00000503492 ARHGEF5Q12774 1597 aa31.97■■■□□ 2.71
PCDH1-204ENST00000503492 ANKRD50Q9ULJ7 1429 aa31.96■■■□□ 2.71
PCDH1-204ENST00000503492 SAMD9LQ8IVG5 1584 aa31.96■■■□□ 2.71
PCDH1-204ENST00000503492 MBD5Q9P267 1494 aa31.95■■■□□ 2.71
PCDH1-204ENST00000503492 HNRNPMP52272 730 aaKnown RBP eCLIP31.95■■■□□ 2.71
PCDH1-204ENST00000503492 L3MBTL2Q969R5 705 aa31.94■■■□□ 2.7
PCDH1-204ENST00000503492 GTF3C3Q9Y5Q9 886 aa31.94■■■□□ 2.7
PCDH1-204ENST00000503492 TTC37Q6PGP7 1564 aa31.92■■■□□ 2.7
PCDH1-204ENST00000503492 TSPY4P0CV99 314 aa31.92■■■□□ 2.7
PCDH1-204ENST00000503492 TSPY10P0CW01 314 aa31.92■■■□□ 2.7
PCDH1-204ENST00000503492 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.91■■■□□ 2.7
PCDH1-204ENST00000503492 TEX14Q8IWB6 1497 aa31.87■■■□□ 2.69
PCDH1-204ENST00000503492 CCDC141Q6ZP82 1450 aa31.86■■■□□ 2.69
PCDH1-204ENST00000503492 KIAA1107Q9UPP5 1409 aa31.85■■■□□ 2.69
PCDH1-204ENST00000503492 UHRF1BP1LA0JNW5 1464 aa31.85■■■□□ 2.69
PCDH1-204ENST00000503492 ZCCHC11Q5TAX3 1644 aaKnown RBP31.83■■■□□ 2.69
PCDH1-204ENST00000503492 ARHGAP5Q13017 1502 aa31.83■■■□□ 2.69
PCDH1-204ENST00000503492 KIF15Q9NS87 1388 aa31.82■■■□□ 2.69
PCDH1-204ENST00000503492 PKD2Q13563 968 aa31.8■■■□□ 2.68
PCDH1-204ENST00000503492 RSPH4AQ5TD94 716 aa31.8■■■□□ 2.68
PCDH1-204ENST00000503492 MYO5CQ9NQX4 1742 aa31.8■■■□□ 2.68
PCDH1-204ENST00000503492 SYCP2Q9BX26 1530 aa31.79■■■□□ 2.68
PCDH1-204ENST00000503492 HSPA5P11021 654 aaKnown RBP31.78■■■□□ 2.68
PCDH1-204ENST00000503492 KCNH8Q96L42 1107 aa31.78■■■□□ 2.68
PCDH1-204ENST00000503492 NUP155O75694 1391 aa31.77■■■□□ 2.68
PCDH1-204ENST00000503492 KDM5DQ9BY66 1539 aa31.76■■■□□ 2.68
PCDH1-204ENST00000503492 NBPF8Q3BBV2 869 aa31.75■■■□□ 2.67
PCDH1-204ENST00000503492 EIF4G2P78344 907 aaKnown RBP eCLIP31.72■■■□□ 2.67
PCDH1-204ENST00000503492 MAST1Q9Y2H9 1570 aa31.71■■■□□ 2.67
PCDH1-204ENST00000503492 PLEKHH2Q8IVE3 1493 aa31.68■■■□□ 2.66
PCDH1-204ENST00000503492 PLCH2O75038 1416 aa31.67■■■□□ 2.66
PCDH1-204ENST00000503492 ARHGEF12Q9NZN5 1544 aa31.64■■■□□ 2.66
PCDH1-204ENST00000503492 WASHC2AQ641Q2 1341 aa31.64■■■□□ 2.65
PCDH1-204ENST00000503492 ANP32CO43423 234 aa31.63■■■□□ 2.65
PCDH1-204ENST00000503492 PLXNC1O60486 1568 aa31.59■■■□□ 2.65
PCDH1-204ENST00000503492 EFCAB2Q5VUJ9 269 aa31.58■■■□□ 2.65
PCDH1-204ENST00000503492 FAM135AQ9P2D6 1515 aa31.57■■■□□ 2.64
PCDH1-204ENST00000503492 CCER2I3L3R5 266 aa31.57■■■□□ 2.64
PCDH1-204ENST00000503492 SPATA31E1Q6ZUB1 1445 aa31.54■■■□□ 2.64
PCDH1-204ENST00000503492 ABCC1P33527 1531 aa31.54■■■□□ 2.64
PCDH1-204ENST00000503492 UNC13BO14795 1591 aa31.53■■■□□ 2.64
PCDH1-204ENST00000503492 C11orf95C9JLR9 678 aaPredicted RBP31.51■■■□□ 2.64
PCDH1-204ENST00000503492 WDR7Q9Y4E6 1490 aa31.49■■■□□ 2.63
PCDH1-204ENST00000503492 DUOX2Q9NRD8 1548 aa31.48■■■□□ 2.63
PCDH1-204ENST00000503492 TRAPPC8Q9Y2L5 1435 aa31.48■■■□□ 2.63
PCDH1-204ENST00000503492 ARAP3Q8WWN8 1544 aa31.47■■■□□ 2.63
PCDH1-204ENST00000503492 CCDC7Q96M83 1385 aa31.47■■■□□ 2.63
PCDH1-204ENST00000503492 UHRF1BP1Q6BDS2 1440 aa31.44■■■□□ 2.62
PCDH1-204ENST00000503492 ZNF326Q5BKZ1 582 aaKnown RBP31.44■■■□□ 2.62
PCDH1-204ENST00000503492 ERBINQ96RT1 1412 aa31.41■■■□□ 2.62
PCDH1-204ENST00000503492 CNTLNQ9NXG0 1405 aa31.41■■■□□ 2.62
PCDH1-204ENST00000503492 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.41■■■□□ 2.62
PCDH1-204ENST00000503492 IQGAP3Q86VI3 1631 aa31.41■■■□□ 2.62
PCDH1-204ENST00000503492 POLR1AO95602 1720 aaPredicted RBP31.39■■■□□ 2.62
PCDH1-204ENST00000503492 MAGI2Q86UL8 1455 aa31.37■■■□□ 2.61
PCDH1-204ENST00000503492 OSCARQ8IYS5 282 aa31.37■■■□□ 2.61
PCDH1-204ENST00000503492 ABCA9Q8IUA7 1624 aa31.36■■■□□ 2.61
PCDH1-204ENST00000503492 RALGAPBQ86X10 1494 aa31.36■■■□□ 2.61
PCDH1-204ENST00000503492 KIF7Q2M1P5 1343 aa31.35■■■□□ 2.61
PCDH1-204ENST00000503492 USP47Q96K76 1375 aa31.35■■■□□ 2.61
PCDH1-204ENST00000503492 PLA2R1Q13018 1463 aa31.35■■■□□ 2.61
PCDH1-204ENST00000503492 AFAP1Q8N556 730 aa31.33■■■□□ 2.61
PCDH1-204ENST00000503492 KDM5CP41229 1560 aa31.33■■■□□ 2.61
PCDH1-204ENST00000503492 ASXL2Q76L83 1435 aa31.33■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms