RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 WWC2Q6AWC2 1192 aa7.3□□□□□ -1.24
USF3-204ENST00000496826 TRIM52Q96A61 297 aa7.3□□□□□ -1.24
USF3-204ENST00000496826 DNAI2Q9GZS0 605 aa7.3□□□□□ -1.24
USF3-204ENST00000496826 CCP110O43303 1012 aa7.3□□□□□ -1.24
USF3-204ENST00000496826 GTPBP4Q9BZE4 634 aaKnown RBP7.3□□□□□ -1.24
USF3-204ENST00000496826 KIF3BO15066 747 aa7.3□□□□□ -1.24
USF3-204ENST00000496826 FAM114A2Q9NRY5 505 aa7.3□□□□□ -1.24
USF3-204ENST00000496826 AK7Q96M32 723 aa7.3□□□□□ -1.24
USF3-204ENST00000496826 A0A0G2JS52 829 aa7.3□□□□□ -1.24
USF3-204ENST00000496826 BCCIPQ9P287 314 aaKnown RBP eCLIP7.3□□□□□ -1.24
USF3-204ENST00000496826 FAM161AQ3B820 660 aa7.29□□□□□ -1.24
USF3-204ENST00000496826 RWDD1Q9H446 243 aaPredicted RBP7.29□□□□□ -1.24
USF3-204ENST00000496826 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.29□□□□□ -1.24
USF3-204ENST00000496826 TCEAL9Q9UHQ7 104 aa7.29□□□□□ -1.24
USF3-204ENST00000496826 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.28□□□□□ -1.24
USF3-204ENST00000496826 V9GYY5 206 aaPredicted RBP7.28□□□□□ -1.24
USF3-204ENST00000496826 RTF1Q92541 710 aaKnown RBP7.28□□□□□ -1.24
USF3-204ENST00000496826 NAP1L2Q9ULW6 460 aaPredicted RBP7.28□□□□□ -1.24
USF3-204ENST00000496826 SUPT16HQ9Y5B9 1047 aaKnown RBP7.28□□□□□ -1.24
USF3-204ENST00000496826 PKNOX2Q96KN3 472 aa7.28□□□□□ -1.24
USF3-204ENST00000496826 KCNJ4P48050 445 aa7.28□□□□□ -1.24
USF3-204ENST00000496826 WWC1Q8IX03 1113 aa7.28□□□□□ -1.24
USF3-204ENST00000496826 NISCHQ9Y2I1 1504 aa7.28□□□□□ -1.24
USF3-204ENST00000496826 IPO7O95373 1038 aaKnown RBP7.28□□□□□ -1.24
USF3-204ENST00000496826 ERC1Q8IUD2 1116 aa7.28□□□□□ -1.24
USF3-204ENST00000496826 USP8P40818 1118 aa7.27□□□□□ -1.25
USF3-204ENST00000496826 AMER1Q5JTC6 1135 aaPredicted RBP7.27□□□□□ -1.25
USF3-204ENST00000496826 ODF2Q5BJF6 829 aa7.27□□□□□ -1.25
USF3-204ENST00000496826 TIMELESSQ9UNS1 1208 aa7.27□□□□□ -1.25
USF3-204ENST00000496826 R3HCC1Q9Y3T6 440 aaKnown RBP7.27□□□□□ -1.25
USF3-204ENST00000496826 TRIM21P19474 475 aaKnown RBP7.27□□□□□ -1.25
USF3-204ENST00000496826 TSPYL1Q9H0U9 437 aa7.27□□□□□ -1.25
USF3-204ENST00000496826 DYDC1Q8WWB3 177 aa7.26□□□□□ -1.25
USF3-204ENST00000496826 HSP90AA2PQ14568 343 aaPredicted RBP7.26□□□□□ -1.25
USF3-204ENST00000496826 CCDC47Q96A33 483 aaKnown RBP7.26□□□□□ -1.25
USF3-204ENST00000496826 KIF16BQ96L93 1317 aa7.25□□□□□ -1.25
USF3-204ENST00000496826 CWC15Q9P013 229 aaKnown RBP7.25□□□□□ -1.25
USF3-204ENST00000496826 DESP17661 470 aa7.25□□□□□ -1.25
USF3-204ENST00000496826 ANKRD20A12PQ8NF67 263 aa7.25□□□□□ -1.25
USF3-204ENST00000496826 ISY1Q9ULR0 285 aaKnown RBP7.25□□□□□ -1.25
USF3-204ENST00000496826 PES1O00541 588 aaKnown RBP7.24□□□□□ -1.25
USF3-204ENST00000496826 STAMBPO95630 424 aa7.24□□□□□ -1.25
USF3-204ENST00000496826 SCAF1Q9H7N4 1312 aaKnown RBP7.24□□□□□ -1.25
USF3-204ENST00000496826 VIMP08670 466 aaKnown RBP7.24□□□□□ -1.25
USF3-204ENST00000496826 CCDC96Q2M329 555 aa7.24□□□□□ -1.25
USF3-204ENST00000496826 SHTN1A0MZ66 631 aa7.23□□□□□ -1.25
USF3-204ENST00000496826 ARXQ96QS3 562 aa7.23□□□□□ -1.25
USF3-204ENST00000496826 TAX1BP1Q86VP1 789 aa7.23□□□□□ -1.25
USF3-204ENST00000496826 RUFY1Q96T51 708 aa7.23□□□□□ -1.25
USF3-204ENST00000496826 MBD3O95983 291 aa7.23□□□□□ -1.25
USF3-204ENST00000496826 NPM1P06748 294 aaKnown RBP eCLIP7.23□□□□□ -1.25
USF3-204ENST00000496826 FTSJ3Q8IY81 847 aaKnown RBP7.23□□□□□ -1.25
USF3-204ENST00000496826 WDHD1O75717 1129 aaPredicted RBP7.23□□□□□ -1.25
USF3-204ENST00000496826 MAPK8IP3Q9UPT6 1336 aa7.23□□□□□ -1.25
USF3-204ENST00000496826 DDX23Q9BUQ8 820 aaKnown RBP7.23□□□□□ -1.25
USF3-204ENST00000496826 WASHC2AQ641Q2 1341 aa7.23□□□□□ -1.25
USF3-204ENST00000496826 MFAP1P55081 439 aaKnown RBP7.22□□□□□ -1.25
USF3-204ENST00000496826 CFAP53Q96M91 514 aa7.22□□□□□ -1.25
USF3-204ENST00000496826 OPA1O60313 960 aa7.22□□□□□ -1.25
USF3-204ENST00000496826 PAF1Q8N7H5 531 aa7.22□□□□□ -1.25
USF3-204ENST00000496826 CENPJQ9HC77 1338 aaPredicted RBP7.21□□□□□ -1.25
USF3-204ENST00000496826 ANKRD18BA2A2Z9 1011 aa7.21□□□□□ -1.25
USF3-204ENST00000496826 PLCB2Q00722 1185 aa7.21□□□□□ -1.25
USF3-204ENST00000496826 ERCC4Q92889 916 aaPredicted RBP7.21□□□□□ -1.25
USF3-204ENST00000496826 TCHPQ9BT92 498 aa7.21□□□□□ -1.25
USF3-204ENST00000496826 PDE4CQ08493 712 aa7.21□□□□□ -1.25
USF3-204ENST00000496826 HMGB2P26583 209 aaKnown RBP7.21□□□□□ -1.26
USF3-204ENST00000496826 MIER1Q8N108 512 aa7.21□□□□□ -1.26
USF3-204ENST00000496826 HOOK1Q9UJC3 728 aaKnown RBP7.21□□□□□ -1.26
USF3-204ENST00000496826 DDX11L8A8MPP1 907 aa7.21□□□□□ -1.26
USF3-204ENST00000496826 CDCA8Q53HL2 280 aa7.2□□□□□ -1.26
USF3-204ENST00000496826 TXLNBQ8N3L3 684 aa7.2□□□□□ -1.26
USF3-204ENST00000496826 CTDP1Q9Y5B0 961 aaPredicted RBP7.2□□□□□ -1.26
USF3-204ENST00000496826 ITGAEP38570 1179 aa7.2□□□□□ -1.26
USF3-204ENST00000496826 ZWINTO95229 277 aa7.2□□□□□ -1.26
USF3-204ENST00000496826 RABEP1Q15276 862 aa7.2□□□□□ -1.26
USF3-204ENST00000496826 OS9Q13438 667 aaPredicted RBP7.19□□□□□ -1.26
USF3-204ENST00000496826 RTN4Q9NQC3 1192 aaKnown RBP7.19□□□□□ -1.26
USF3-204ENST00000496826 ZNHIT6Q9NWK9 470 aaKnown RBP7.19□□□□□ -1.26
USF3-204ENST00000496826 EIF3JO75822 258 aaKnown RBP7.19□□□□□ -1.26
USF3-204ENST00000496826 G3V3G9 751 aa7.19□□□□□ -1.26
USF3-204ENST00000496826 DCAF8Q5TAQ9 597 aa7.19□□□□□ -1.26
USF3-204ENST00000496826 RASSF8Q8NHQ8 419 aa7.19□□□□□ -1.26
USF3-204ENST00000496826 LRRFIP1Q32MZ4 808 aaKnown RBP7.19□□□□□ -1.26
USF3-204ENST00000496826 GSE1Q14687 1217 aa7.19□□□□□ -1.26
USF3-204ENST00000496826 CT47A1Q5JQC4 288 aaPredicted RBP7.19□□□□□ -1.26
USF3-204ENST00000496826 MARCH6O60337 910 aa7.18□□□□□ -1.26
USF3-204ENST00000496826 KIAA1211Q6ZU35 1233 aa7.18□□□□□ -1.26
USF3-204ENST00000496826 CENPQQ7L2Z9 268 aaPredicted RBP7.18□□□□□ -1.26
USF3-204ENST00000496826 ERLIN2O94905 339 aa7.18□□□□□ -1.26
USF3-204ENST00000496826 GBP2P32456 591 aaPredicted RBP7.18□□□□□ -1.26
USF3-204ENST00000496826 GPATCH3Q96I76 525 aa7.18□□□□□ -1.26
USF3-204ENST00000496826 CWC22Q9HCG8 908 aaKnown RBP7.18□□□□□ -1.26
USF3-204ENST00000496826 CCDC146Q8IYE0 955 aa7.18□□□□□ -1.26
USF3-204ENST00000496826 HSP90AB1P08238 724 aaKnown RBP7.18□□□□□ -1.26
USF3-204ENST00000496826 DHX8Q14562 1220 aaKnown RBP7.18□□□□□ -1.26
USF3-204ENST00000496826 AMOTL1Q8IY63 956 aa7.18□□□□□ -1.26
USF3-204ENST00000496826 SETSIPP0DME0 302 aa7.18□□□□□ -1.26
USF3-204ENST00000496826 NUCKS1Q9H1E3 243 aaKnown RBP7.18□□□□□ -1.26
USF3-204ENST00000496826 CCDC97Q96F63 343 aaPredicted RBP7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms