RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 CAMSAP2Q08AD1 1489 aa18.79■□□□□ 0.6
GARNL3-220ENST00000496711 TONSLQ96HA7 1378 aa18.78■□□□□ 0.6
GARNL3-220ENST00000496711 ABCC5O15440 1437 aa18.78■□□□□ 0.6
GARNL3-220ENST00000496711 CDC42BPAQ5VT25 1732 aa18.77■□□□□ 0.6
GARNL3-220ENST00000496711 SHROOM2Q13796 1616 aa18.76■□□□□ 0.59
GARNL3-220ENST00000496711 GPATCH8Q9UKJ3 1502 aaKnown RBP18.76■□□□□ 0.59
GARNL3-220ENST00000496711 DENND4BO75064 1496 aaPredicted RBP18.74■□□□□ 0.59
GARNL3-220ENST00000496711 PPP1R15AO75807 674 aaPredicted RBP18.74■□□□□ 0.59
GARNL3-220ENST00000496711 ATP10BO94823 1461 aa18.72■□□□□ 0.59
GARNL3-220ENST00000496711 YTHDC1Q96MU7 727 aaKnown RBP18.71■□□□□ 0.59
GARNL3-220ENST00000496711 KDM5BQ9UGL1 1544 aa18.71■□□□□ 0.59
GARNL3-220ENST00000496711 ZNF644Q9H582 1327 aaPredicted RBP18.71■□□□□ 0.59
GARNL3-220ENST00000496711 ABCC10Q5T3U5 1492 aa18.7■□□□□ 0.58
GARNL3-220ENST00000496711 CFDP1Q9UEE9 299 aaPredicted RBP18.69■□□□□ 0.58
GARNL3-220ENST00000496711 ADGRL2O95490 1459 aa18.68■□□□□ 0.58
GARNL3-220ENST00000496711 TRIM52Q96A61 297 aa18.68■□□□□ 0.58
GARNL3-220ENST00000496711 PTPRGP23470 1445 aa18.66■□□□□ 0.58
GARNL3-220ENST00000496711 PLEKHD1A6NEE1 506 aa18.65■□□□□ 0.58
GARNL3-220ENST00000496711 SHANK2Q9UPX8 1470 aa18.63■□□□□ 0.57
GARNL3-220ENST00000496711 MPHOSPH9Q99550 1183 aa18.63■□□□□ 0.57
GARNL3-220ENST00000496711 PREX2Q70Z35 1606 aa18.63■□□□□ 0.57
GARNL3-220ENST00000496711 NCOA1Q15788 1441 aa18.61■□□□□ 0.57
GARNL3-220ENST00000496711 CDC42BPBQ9Y5S2 1711 aa18.6■□□□□ 0.57
GARNL3-220ENST00000496711 GTF3C3Q9Y5Q9 886 aa18.59■□□□□ 0.57
GARNL3-220ENST00000496711 ARHGEF5Q12774 1597 aa18.59■□□□□ 0.57
GARNL3-220ENST00000496711 ZNF777Q9ULD5 760 aaPredicted RBP18.58■□□□□ 0.57
GARNL3-220ENST00000496711 CLASP1Q7Z460 1538 aa18.57■□□□□ 0.56
GARNL3-220ENST00000496711 ANKRD30AQ9BXX3 1397 aa18.57■□□□□ 0.56
GARNL3-220ENST00000496711 PZPP20742 1482 aa18.57■□□□□ 0.56
GARNL3-220ENST00000496711 ABCC2Q92887 1545 aa18.57■□□□□ 0.56
GARNL3-220ENST00000496711 ERCC6L2Q5T890 1561 aa18.57■□□□□ 0.56
GARNL3-220ENST00000496711 RPRD2Q5VT52 1461 aaKnown RBP18.56■□□□□ 0.56
GARNL3-220ENST00000496711 ANKRD30BQ9BXX2 1392 aa18.55■□□□□ 0.56
GARNL3-220ENST00000496711 SAMD9LQ8IVG5 1584 aa18.55■□□□□ 0.56
GARNL3-220ENST00000496711 C9orf84Q5VXU9 1444 aa18.54■□□□□ 0.56
GARNL3-220ENST00000496711 MYO5CQ9NQX4 1742 aa18.53■□□□□ 0.56
GARNL3-220ENST00000496711 TTC37Q6PGP7 1564 aa18.53■□□□□ 0.56
GARNL3-220ENST00000496711 TEX14Q8IWB6 1497 aa18.53■□□□□ 0.56
GARNL3-220ENST00000496711 DDX10Q13206 875 aaKnown RBP18.52■□□□□ 0.55
GARNL3-220ENST00000496711 FOXD1Q16676 465 aa18.5■□□□□ 0.55
GARNL3-220ENST00000496711 HIRIP3Q9BW71 556 aaPredicted RBP18.5■□□□□ 0.55
GARNL3-220ENST00000496711 SLC4A1APQ9BWU0 796 aaKnown RBP18.5■□□□□ 0.55
GARNL3-220ENST00000496711 ANKRD50Q9ULJ7 1429 aa18.5■□□□□ 0.55
GARNL3-220ENST00000496711 KDM5DQ9BY66 1539 aa18.49■□□□□ 0.55
GARNL3-220ENST00000496711 CCDC141Q6ZP82 1450 aa18.49■□□□□ 0.55
GARNL3-220ENST00000496711 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.48■□□□□ 0.55
GARNL3-220ENST00000496711 MBD5Q9P267 1494 aa18.48■□□□□ 0.55
GARNL3-220ENST00000496711 ZCCHC11Q5TAX3 1644 aaKnown RBP18.48■□□□□ 0.55
GARNL3-220ENST00000496711 KIAA1107Q9UPP5 1409 aa18.47■□□□□ 0.55
GARNL3-220ENST00000496711 MAST1Q9Y2H9 1570 aa18.45■□□□□ 0.54
GARNL3-220ENST00000496711 ARHGAP5Q13017 1502 aa18.45■□□□□ 0.54
GARNL3-220ENST00000496711 L3MBTL2Q969R5 705 aa18.45■□□□□ 0.54
GARNL3-220ENST00000496711 SYCP2Q9BX26 1530 aa18.44■□□□□ 0.54
GARNL3-220ENST00000496711 POLR1AO95602 1720 aaPredicted RBP18.44■□□□□ 0.54
GARNL3-220ENST00000496711 UHRF1BP1LA0JNW5 1464 aa18.43■□□□□ 0.54
GARNL3-220ENST00000496711 TSPY4P0CV99 314 aa18.42■□□□□ 0.54
GARNL3-220ENST00000496711 TSPY10P0CW01 314 aa18.42■□□□□ 0.54
GARNL3-220ENST00000496711 KIF15Q9NS87 1388 aa18.42■□□□□ 0.54
GARNL3-220ENST00000496711 PLXNC1O60486 1568 aa18.4■□□□□ 0.54
GARNL3-220ENST00000496711 HNRNPMP52272 730 aaKnown RBP eCLIP18.39■□□□□ 0.54
GARNL3-220ENST00000496711 HSPA5P11021 654 aaKnown RBP18.39■□□□□ 0.53
GARNL3-220ENST00000496711 PLEKHH2Q8IVE3 1493 aa18.39■□□□□ 0.53
GARNL3-220ENST00000496711 EIF4G2P78344 907 aaKnown RBP eCLIP18.37■□□□□ 0.53
GARNL3-220ENST00000496711 RSPH4AQ5TD94 716 aa18.37■□□□□ 0.53
GARNL3-220ENST00000496711 UNC13BO14795 1591 aa18.37■□□□□ 0.53
GARNL3-220ENST00000496711 ANP32CO43423 234 aa18.37■□□□□ 0.53
GARNL3-220ENST00000496711 NUP155O75694 1391 aa18.36■□□□□ 0.53
GARNL3-220ENST00000496711 PKD2Q13563 968 aa18.36■□□□□ 0.53
GARNL3-220ENST00000496711 CCER2I3L3R5 266 aa18.35■□□□□ 0.53
GARNL3-220ENST00000496711 KCNH8Q96L42 1107 aa18.35■□□□□ 0.53
GARNL3-220ENST00000496711 NBPF8Q3BBV2 869 aa18.33■□□□□ 0.52
GARNL3-220ENST00000496711 ARHGEF12Q9NZN5 1544 aa18.32■□□□□ 0.52
GARNL3-220ENST00000496711 FAM135AQ9P2D6 1515 aa18.32■□□□□ 0.52
GARNL3-220ENST00000496711 WASHC2AQ641Q2 1341 aa18.32■□□□□ 0.52
GARNL3-220ENST00000496711 ABCC1P33527 1531 aa18.31■□□□□ 0.52
GARNL3-220ENST00000496711 PLCH2O75038 1416 aa18.3■□□□□ 0.52
GARNL3-220ENST00000496711 IQGAP3Q86VI3 1631 aa18.29■□□□□ 0.52
GARNL3-220ENST00000496711 ARAP3Q8WWN8 1544 aa18.28■□□□□ 0.52
GARNL3-220ENST00000496711 SPATA31E1Q6ZUB1 1445 aa18.28■□□□□ 0.52
GARNL3-220ENST00000496711 CNTLNQ9NXG0 1405 aa18.28■□□□□ 0.52
GARNL3-220ENST00000496711 DUOX2Q9NRD8 1548 aa18.27■□□□□ 0.52
GARNL3-220ENST00000496711 CCDC7Q96M83 1385 aa18.26■□□□□ 0.51
GARNL3-220ENST00000496711 UHRF1BP1Q6BDS2 1440 aa18.26■□□□□ 0.51
GARNL3-220ENST00000496711 KDM5CP41229 1560 aa18.25■□□□□ 0.51
GARNL3-220ENST00000496711 MAGI2Q86UL8 1455 aa18.24■□□□□ 0.51
GARNL3-220ENST00000496711 RALGAPBQ86X10 1494 aa18.24■□□□□ 0.51
GARNL3-220ENST00000496711 ERBINQ96RT1 1412 aa18.23■□□□□ 0.51
GARNL3-220ENST00000496711 WDR7Q9Y4E6 1490 aa18.22■□□□□ 0.51
GARNL3-220ENST00000496711 ABCA9Q8IUA7 1624 aa18.21■□□□□ 0.51
GARNL3-220ENST00000496711 EFCAB2Q5VUJ9 269 aa18.2■□□□□ 0.5
GARNL3-220ENST00000496711 BCORL1Q5H9F3 1711 aa18.2■□□□□ 0.5
GARNL3-220ENST00000496711 USP47Q96K76 1375 aa18.18■□□□□ 0.5
GARNL3-220ENST00000496711 ZFYVE16Q7Z3T8 1539 aa18.18■□□□□ 0.5
GARNL3-220ENST00000496711 C11orf95C9JLR9 678 aaPredicted RBP18.18■□□□□ 0.5
GARNL3-220ENST00000496711 CCDC144AA2RUR9 1427 aa18.16■□□□□ 0.5
GARNL3-220ENST00000496711 TRAPPC8Q9Y2L5 1435 aa18.16■□□□□ 0.5
GARNL3-220ENST00000496711 KIF7Q2M1P5 1343 aa18.16■□□□□ 0.5
GARNL3-220ENST00000496711 ZNF326Q5BKZ1 582 aaKnown RBP18.16■□□□□ 0.5
GARNL3-220ENST00000496711 TRPM1Q7Z4N2 1603 aa18.15■□□□□ 0.5
GARNL3-220ENST00000496711 INO80Q9ULG1 1556 aaPredicted RBP18.14■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms