RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 ABCC5O15440 1437 aa15.75■□□□□ 0.11
CMSS1-208ENST00000496116 PRG4Q92954 1404 aaPredicted RBP15.75■□□□□ 0.11
CMSS1-208ENST00000496116 PELP1Q8IZL8 1130 aaKnown RBP15.73■□□□□ 0.11
CMSS1-208ENST00000496116 MPHOSPH9Q99550 1183 aa15.72■□□□□ 0.11
CMSS1-208ENST00000496116 DDX10Q13206 875 aaKnown RBP15.71■□□□□ 0.11
CMSS1-208ENST00000496116 CFDP1Q9UEE9 299 aaPredicted RBP15.71■□□□□ 0.11
CMSS1-208ENST00000496116 DENND4BO75064 1496 aaPredicted RBP15.71■□□□□ 0.11
CMSS1-208ENST00000496116 CAMSAP2Q08AD1 1489 aa15.71■□□□□ 0.11
CMSS1-208ENST00000496116 ABCA8O94911 1581 aa15.71■□□□□ 0.11
CMSS1-208ENST00000496116 ZNF644Q9H582 1327 aaPredicted RBP15.7■□□□□ 0.1
CMSS1-208ENST00000496116 GPATCH8Q9UKJ3 1502 aaKnown RBP15.7■□□□□ 0.1
CMSS1-208ENST00000496116 KIF14Q15058 1648 aa15.69■□□□□ 0.1
CMSS1-208ENST00000496116 KDM5BQ9UGL1 1544 aa15.68■□□□□ 0.1
CMSS1-208ENST00000496116 ADGBQ8N7X0 1667 aa15.68■□□□□ 0.1
CMSS1-208ENST00000496116 PLEKHD1A6NEE1 506 aa15.68■□□□□ 0.1
CMSS1-208ENST00000496116 HIRIP3Q9BW71 556 aaPredicted RBP15.66■□□□□ 0.1
CMSS1-208ENST00000496116 CROCC2H7BZ55 1655 aa15.65■□□□□ 0.1
CMSS1-208ENST00000496116 ATP10BO94823 1461 aa15.64■□□□□ 0.09
CMSS1-208ENST00000496116 ADGRL2O95490 1459 aa15.64■□□□□ 0.09
CMSS1-208ENST00000496116 ZNF777Q9ULD5 760 aaPredicted RBP15.63■□□□□ 0.09
CMSS1-208ENST00000496116 NCOA1Q15788 1441 aa15.63■□□□□ 0.09
CMSS1-208ENST00000496116 CDC42BPAQ5VT25 1732 aa15.62■□□□□ 0.09
CMSS1-208ENST00000496116 ANP32CO43423 234 aa15.62■□□□□ 0.09
CMSS1-208ENST00000496116 ANKRD30BQ9BXX2 1392 aa15.62■□□□□ 0.09
CMSS1-208ENST00000496116 SLC4A1APQ9BWU0 796 aaKnown RBP15.61■□□□□ 0.09
CMSS1-208ENST00000496116 ANKRD30AQ9BXX3 1397 aa15.61■□□□□ 0.09
CMSS1-208ENST00000496116 PTPRGP23470 1445 aa15.61■□□□□ 0.09
CMSS1-208ENST00000496116 ABCC10Q5T3U5 1492 aa15.61■□□□□ 0.09
CMSS1-208ENST00000496116 RPRD2Q5VT52 1461 aaKnown RBP15.61■□□□□ 0.09
CMSS1-208ENST00000496116 CHD1O14646 1710 aa15.6■□□□□ 0.09
CMSS1-208ENST00000496116 CCER2I3L3R5 266 aa15.59■□□□□ 0.09
CMSS1-208ENST00000496116 FOXD1Q16676 465 aa15.59■□□□□ 0.09
CMSS1-208ENST00000496116 SHANK2Q9UPX8 1470 aa15.58■□□□□ 0.08
CMSS1-208ENST00000496116 L3MBTL2Q969R5 705 aa15.58■□□□□ 0.08
CMSS1-208ENST00000496116 EIF4G2P78344 907 aaKnown RBP eCLIP15.56■□□□□ 0.082e-8■■■■■ 43.9
CMSS1-208ENST00000496116 KCNH8Q96L42 1107 aa15.56■□□□□ 0.08
CMSS1-208ENST00000496116 PZPP20742 1482 aa15.55■□□□□ 0.08
CMSS1-208ENST00000496116 SHROOM2Q13796 1616 aa15.54■□□□□ 0.08
CMSS1-208ENST00000496116 ANKRD50Q9ULJ7 1429 aa15.54■□□□□ 0.08
CMSS1-208ENST00000496116 HSPA5P11021 654 aaKnown RBP15.54■□□□□ 0.08
CMSS1-208ENST00000496116 TEX14Q8IWB6 1497 aa15.54■□□□□ 0.08
CMSS1-208ENST00000496116 C9orf84Q5VXU9 1444 aa15.54■□□□□ 0.08
CMSS1-208ENST00000496116 TSPY4P0CV99 314 aa15.53■□□□□ 0.08
CMSS1-208ENST00000496116 TSPY10P0CW01 314 aa15.53■□□□□ 0.08
CMSS1-208ENST00000496116 KIAA1107Q9UPP5 1409 aa15.52■□□□□ 0.08
CMSS1-208ENST00000496116 ARHGEF5Q12774 1597 aa15.52■□□□□ 0.07
CMSS1-208ENST00000496116 PREX2Q70Z35 1606 aa15.5■□□□□ 0.07
CMSS1-208ENST00000496116 RSPH4AQ5TD94 716 aa15.49■□□□□ 0.07
CMSS1-208ENST00000496116 WASHC2AQ641Q2 1341 aa15.48■□□□□ 0.07
CMSS1-208ENST00000496116 CDC42BPBQ9Y5S2 1711 aa15.48■□□□□ 0.07
CMSS1-208ENST00000496116 PKD2Q13563 968 aa15.47■□□□□ 0.07
CMSS1-208ENST00000496116 CCDC141Q6ZP82 1450 aa15.46■□□□□ 0.07
CMSS1-208ENST00000496116 MBD5Q9P267 1494 aa15.46■□□□□ 0.07
CMSS1-208ENST00000496116 KDM5DQ9BY66 1539 aa15.46■□□□□ 0.07
CMSS1-208ENST00000496116 NBPF8Q3BBV2 869 aa15.46■□□□□ 0.06
CMSS1-208ENST00000496116 ABCC2Q92887 1545 aa15.46■□□□□ 0.06
CMSS1-208ENST00000496116 SAMD9LQ8IVG5 1584 aa15.46■□□□□ 0.06
CMSS1-208ENST00000496116 NUP155O75694 1391 aa15.45■□□□□ 0.06
CMSS1-208ENST00000496116 KIF15Q9NS87 1388 aa15.45■□□□□ 0.06
CMSS1-208ENST00000496116 HNRNPMP52272 730 aaKnown RBP eCLIP15.44■□□□□ 0.067e-7■■■■■ 41.5
CMSS1-208ENST00000496116 SUPT16HQ9Y5B9 1047 aaKnown RBP15.43■□□□□ 0.06
CMSS1-208ENST00000496116 CNTLNQ9NXG0 1405 aa15.42■□□□□ 0.06
CMSS1-208ENST00000496116 POLR1AO95602 1720 aaPredicted RBP15.42■□□□□ 0.06
CMSS1-208ENST00000496116 CCDC7Q96M83 1385 aa15.41■□□□□ 0.06
CMSS1-208ENST00000496116 ARHGAP5Q13017 1502 aa15.41■□□□□ 0.06
CMSS1-208ENST00000496116 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.41■□□□□ 0.066e-6■■■■■ 38.2
CMSS1-208ENST00000496116 SPATA31E1Q6ZUB1 1445 aa15.41■□□□□ 0.06
CMSS1-208ENST00000496116 TTC37Q6PGP7 1564 aa15.41■□□□□ 0.06
CMSS1-208ENST00000496116 MYO5CQ9NQX4 1742 aa15.4■□□□□ 0.06
CMSS1-208ENST00000496116 ERCC6L2Q5T890 1561 aa15.4■□□□□ 0.06
CMSS1-208ENST00000496116 PLEKHH2Q8IVE3 1493 aa15.39■□□□□ 0.05
CMSS1-208ENST00000496116 MAST1Q9Y2H9 1570 aa15.39■□□□□ 0.05
CMSS1-208ENST00000496116 SYCP2Q9BX26 1530 aa15.39■□□□□ 0.05
CMSS1-208ENST00000496116 CLASP1Q7Z460 1538 aa15.38■□□□□ 0.05
CMSS1-208ENST00000496116 ARHGEF12Q9NZN5 1544 aa15.37■□□□□ 0.05
CMSS1-208ENST00000496116 UHRF1BP1LA0JNW5 1464 aa15.36■□□□□ 0.05
CMSS1-208ENST00000496116 C11orf95C9JLR9 678 aaPredicted RBP15.35■□□□□ 0.05
CMSS1-208ENST00000496116 UHRF1BP1Q6BDS2 1440 aa15.35■□□□□ 0.05
CMSS1-208ENST00000496116 FAM135AQ9P2D6 1515 aa15.35■□□□□ 0.05
CMSS1-208ENST00000496116 ZCCHC11Q5TAX3 1644 aaKnown RBP15.34■□□□□ 0.05
CMSS1-208ENST00000496116 KIF7Q2M1P5 1343 aa15.33■□□□□ 0.05
CMSS1-208ENST00000496116 PLXNC1O60486 1568 aa15.33■□□□□ 0.05
CMSS1-208ENST00000496116 ZNF326Q5BKZ1 582 aaKnown RBP15.33■□□□□ 0.04
CMSS1-208ENST00000496116 USP47Q96K76 1375 aa15.33■□□□□ 0.04
CMSS1-208ENST00000496116 UNC13BO14795 1591 aa15.32■□□□□ 0.04
CMSS1-208ENST00000496116 RALGAPBQ86X10 1494 aa15.32■□□□□ 0.04
CMSS1-208ENST00000496116 PLCH2O75038 1416 aa15.31■□□□□ 0.04
CMSS1-208ENST00000496116 KDM5CP41229 1560 aa15.31■□□□□ 0.04
CMSS1-208ENST00000496116 ARID4BQ4LE39 1312 aaPredicted RBP15.3■□□□□ 0.04
CMSS1-208ENST00000496116 PRKRIP1Q9H875 184 aaPredicted RBP15.3■□□□□ 0.04
CMSS1-208ENST00000496116 NEFLP07196 543 aa15.29■□□□□ 0.04
CMSS1-208ENST00000496116 DUOX2Q9NRD8 1548 aa15.29■□□□□ 0.04
CMSS1-208ENST00000496116 EFCAB2Q5VUJ9 269 aa15.28■□□□□ 0.04
CMSS1-208ENST00000496116 CCDC144AA2RUR9 1427 aa15.27■□□□□ 0.04
CMSS1-208ENST00000496116 HNRNPUQ00839 825 aaKnown RBP eCLIP15.27■□□□□ 0.04
CMSS1-208ENST00000496116 ERBINQ96RT1 1412 aa15.26■□□□□ 0.03
CMSS1-208ENST00000496116 IQGAP3Q86VI3 1631 aa15.26■□□□□ 0.03
CMSS1-208ENST00000496116 CARD11Q9BXL7 1154 aa15.26■□□□□ 0.03
CMSS1-208ENST00000496116 DCAF11Q8TEB1 546 aa15.25■□□□□ 0.03
CMSS1-208ENST00000496116 BCORL1Q5H9F3 1711 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms