RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 DAPK1P53355 1430 aa19.82■□□□□ 0.76
VCP-207ENST00000493886 ZNF644Q9H582 1327 aaPredicted RBP19.81■□□□□ 0.76
VCP-207ENST00000493886 DNMT1P26358 1616 aaKnown RBP19.81■□□□□ 0.76
VCP-207ENST00000493886 KIF14Q15058 1648 aa19.8■□□□□ 0.76
VCP-207ENST00000493886 ABCC5O15440 1437 aa19.79■□□□□ 0.76
VCP-207ENST00000493886 ITSN2Q9NZM3 1697 aa19.79■□□□□ 0.76
VCP-207ENST00000493886 ATP10BO94823 1461 aa19.78■□□□□ 0.76
VCP-207ENST00000493886 GPATCH8Q9UKJ3 1502 aaKnown RBP19.78■□□□□ 0.76
VCP-207ENST00000493886 ROCK1Q13464 1354 aa19.78■□□□□ 0.76
VCP-207ENST00000493886 KDM6BO15054 1643 aa19.78■□□□□ 0.76
VCP-207ENST00000493886 PTPRGP23470 1445 aa19.77■□□□□ 0.76
VCP-207ENST00000493886 CFDP1Q9UEE9 299 aaPredicted RBP19.77■□□□□ 0.76
VCP-207ENST00000493886 PLEKHD1A6NEE1 506 aa19.76■□□□□ 0.75
VCP-207ENST00000493886 CAMSAP2Q08AD1 1489 aa19.75■□□□□ 0.75
VCP-207ENST00000493886 PPP1R15AO75807 674 aaPredicted RBP19.75■□□□□ 0.75
VCP-207ENST00000493886 TRIM52Q96A61 297 aa19.74■□□□□ 0.75
VCP-207ENST00000493886 TONSLQ96HA7 1378 aa19.73■□□□□ 0.75
VCP-207ENST00000493886 SHROOM2Q13796 1616 aa19.73■□□□□ 0.75
VCP-207ENST00000493886 DENND4BO75064 1496 aaPredicted RBP19.7■□□□□ 0.74
VCP-207ENST00000493886 ABCC10Q5T3U5 1492 aa19.7■□□□□ 0.74
VCP-207ENST00000493886 ZNF777Q9ULD5 760 aaPredicted RBP19.69■□□□□ 0.74
VCP-207ENST00000493886 CDC42BPAQ5VT25 1732 aa19.68■□□□□ 0.74
VCP-207ENST00000493886 MPHOSPH9Q99550 1183 aa19.67■□□□□ 0.74
VCP-207ENST00000493886 ADGBQ8N7X0 1667 aa19.64■□□□□ 0.73
VCP-207ENST00000493886 CROCC2H7BZ55 1655 aa19.64■□□□□ 0.73
VCP-207ENST00000493886 NCOA1Q15788 1441 aa19.63■□□□□ 0.73
VCP-207ENST00000493886 ERCC6L2Q5T890 1561 aa19.63■□□□□ 0.73
VCP-207ENST00000493886 ADGRL2O95490 1459 aa19.62■□□□□ 0.73
VCP-207ENST00000493886 KDM5BQ9UGL1 1544 aa19.6■□□□□ 0.73
VCP-207ENST00000493886 CLASP1Q7Z460 1538 aa19.58■□□□□ 0.73
VCP-207ENST00000493886 ANKRD30AQ9BXX3 1397 aa19.58■□□□□ 0.72
VCP-207ENST00000493886 ABCC2Q92887 1545 aa19.57■□□□□ 0.72
VCP-207ENST00000493886 FOXD1Q16676 465 aa19.56■□□□□ 0.72
VCP-207ENST00000493886 SHANK2Q9UPX8 1470 aa19.55■□□□□ 0.72
VCP-207ENST00000493886 ANKRD30BQ9BXX2 1392 aa19.54■□□□□ 0.72
VCP-207ENST00000493886 SLC4A1APQ9BWU0 796 aaKnown RBP19.54■□□□□ 0.72
VCP-207ENST00000493886 C9orf84Q5VXU9 1444 aa19.53■□□□□ 0.72
VCP-207ENST00000493886 HIRIP3Q9BW71 556 aaPredicted RBP19.52■□□□□ 0.72
VCP-207ENST00000493886 PREX2Q70Z35 1606 aa19.52■□□□□ 0.72
VCP-207ENST00000493886 PZPP20742 1482 aa19.52■□□□□ 0.72
VCP-207ENST00000493886 CDC42BPBQ9Y5S2 1711 aa19.51■□□□□ 0.71
VCP-207ENST00000493886 ARHGEF5Q12774 1597 aa19.51■□□□□ 0.71
VCP-207ENST00000493886 ANKRD50Q9ULJ7 1429 aa19.5■□□□□ 0.71
VCP-207ENST00000493886 TSPY4P0CV99 314 aa19.5■□□□□ 0.71
VCP-207ENST00000493886 TSPY10P0CW01 314 aa19.5■□□□□ 0.71
VCP-207ENST00000493886 DDX10Q13206 875 aaKnown RBP19.5■□□□□ 0.71
VCP-207ENST00000493886 HNRNPMP52272 730 aaKnown RBP eCLIP19.49■□□□□ 0.712e-6■■□□□ 13.4
VCP-207ENST00000493886 MBD5Q9P267 1494 aa19.49■□□□□ 0.71
VCP-207ENST00000493886 SAMD9LQ8IVG5 1584 aa19.49■□□□□ 0.71
VCP-207ENST00000493886 KCNH8Q96L42 1107 aa19.49■□□□□ 0.71
VCP-207ENST00000493886 RPRD2Q5VT52 1461 aaKnown RBP19.48■□□□□ 0.71
VCP-207ENST00000493886 TTC37Q6PGP7 1564 aa19.47■□□□□ 0.71
VCP-207ENST00000493886 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.47■□□□□ 0.715e-7■■■■□ 21
VCP-207ENST00000493886 L3MBTL2Q969R5 705 aa19.47■□□□□ 0.71
VCP-207ENST00000493886 UHRF1BP1LA0JNW5 1464 aa19.45■□□□□ 0.7
VCP-207ENST00000493886 CCDC141Q6ZP82 1450 aa19.45■□□□□ 0.7
VCP-207ENST00000493886 RSPH4AQ5TD94 716 aa19.43■□□□□ 0.7
VCP-207ENST00000493886 ARHGAP5Q13017 1502 aa19.43■□□□□ 0.7
VCP-207ENST00000493886 ZCCHC11Q5TAX3 1644 aaKnown RBP19.43■□□□□ 0.7
VCP-207ENST00000493886 KIAA1107Q9UPP5 1409 aa19.43■□□□□ 0.7
VCP-207ENST00000493886 KIF15Q9NS87 1388 aa19.43■□□□□ 0.7
VCP-207ENST00000493886 TEX14Q8IWB6 1497 aa19.42■□□□□ 0.7
VCP-207ENST00000493886 MYO5CQ9NQX4 1742 aa19.41■□□□□ 0.7
VCP-207ENST00000493886 SYCP2Q9BX26 1530 aa19.4■□□□□ 0.7
VCP-207ENST00000493886 PKD2Q13563 968 aa19.4■□□□□ 0.7
VCP-207ENST00000493886 NUP155O75694 1391 aa19.39■□□□□ 0.69
VCP-207ENST00000493886 SUPT16HQ9Y5B9 1047 aaKnown RBP19.38■□□□□ 0.69
VCP-207ENST00000493886 KDM5DQ9BY66 1539 aa19.37■□□□□ 0.69
VCP-207ENST00000493886 PLEKHH2Q8IVE3 1493 aa19.36■□□□□ 0.69
VCP-207ENST00000493886 HSPA5P11021 654 aaKnown RBP19.36■□□□□ 0.69
VCP-207ENST00000493886 MAST1Q9Y2H9 1570 aa19.35■□□□□ 0.69
VCP-207ENST00000493886 EIF4G2P78344 907 aaKnown RBP eCLIP19.34■□□□□ 0.69
VCP-207ENST00000493886 NBPF8Q3BBV2 869 aa19.34■□□□□ 0.69
VCP-207ENST00000493886 PLCH2O75038 1416 aa19.34■□□□□ 0.69
VCP-207ENST00000493886 EFCAB2Q5VUJ9 269 aa19.29■□□□□ 0.68
VCP-207ENST00000493886 ARHGEF12Q9NZN5 1544 aa19.29■□□□□ 0.68
VCP-207ENST00000493886 ANP32CO43423 234 aa19.29■□□□□ 0.68
VCP-207ENST00000493886 PLXNC1O60486 1568 aa19.27■□□□□ 0.68
VCP-207ENST00000493886 WASHC2AQ641Q2 1341 aa19.27■□□□□ 0.67
VCP-207ENST00000493886 BCANQ96GW7 911 aa19.26■□□□□ 0.67
VCP-207ENST00000493886 FAM135AQ9P2D6 1515 aa19.26■□□□□ 0.67
VCP-207ENST00000493886 ABCC1P33527 1531 aa19.25■□□□□ 0.67
VCP-207ENST00000493886 CCER2I3L3R5 266 aa19.24■□□□□ 0.67
VCP-207ENST00000493886 WDR7Q9Y4E6 1490 aa19.23■□□□□ 0.67
VCP-207ENST00000493886 UNC13BO14795 1591 aa19.23■□□□□ 0.67
VCP-207ENST00000493886 ARAP3Q8WWN8 1544 aa19.22■□□□□ 0.67
VCP-207ENST00000493886 DUOX2Q9NRD8 1548 aa19.21■□□□□ 0.67
VCP-207ENST00000493886 SPATA31E1Q6ZUB1 1445 aa19.21■□□□□ 0.67
VCP-207ENST00000493886 TRAPPC8Q9Y2L5 1435 aa19.2■□□□□ 0.66
VCP-207ENST00000493886 OSCARQ8IYS5 282 aa19.19■□□□□ 0.66
VCP-207ENST00000493886 ZNF326Q5BKZ1 582 aaKnown RBP19.18■□□□□ 0.66
VCP-207ENST00000493886 ERBINQ96RT1 1412 aa19.18■□□□□ 0.66
VCP-207ENST00000493886 C11orf95C9JLR9 678 aaPredicted RBP19.18■□□□□ 0.66
VCP-207ENST00000493886 CCDC7Q96M83 1385 aa19.18■□□□□ 0.66
VCP-207ENST00000493886 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.17■□□□□ 0.666e-7■■■■□ 20.2
VCP-207ENST00000493886 UHRF1BP1Q6BDS2 1440 aa19.17■□□□□ 0.66
VCP-207ENST00000493886 ANP32EQ9BTT0 268 aa19.17■□□□□ 0.66
VCP-207ENST00000493886 IQGAP3Q86VI3 1631 aa19.16■□□□□ 0.66
VCP-207ENST00000493886 EIF5BO60841 1220 aaKnown RBP19.15■□□□□ 0.66
VCP-207ENST00000493886 ABCA9Q8IUA7 1624 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms