RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 CHD1O14646 1710 aa9.41□□□□□ -0.9
VPS13B-205ENST00000493587 HSP90AA2PQ14568 343 aaPredicted RBP9.4□□□□□ -0.9
VPS13B-205ENST00000493587 RAPGEF6Q8TEU7 1601 aa9.4□□□□□ -0.9
VPS13B-205ENST00000493587 UBTFP17480 764 aaKnown RBP9.4□□□□□ -0.91
VPS13B-205ENST00000493587 KANK4Q5T7N3 995 aaPredicted RBP9.4□□□□□ -0.91
VPS13B-205ENST00000493587 TRIM52Q96A61 297 aa9.4□□□□□ -0.91
VPS13B-205ENST00000493587 NUP160Q12769 1436 aa9.4□□□□□ -0.91
VPS13B-205ENST00000493587 MAGI1Q96QZ7 1491 aaPredicted RBP9.39□□□□□ -0.91
VPS13B-205ENST00000493587 KLHL34Q8N239 644 aa9.39□□□□□ -0.91
VPS13B-205ENST00000493587 CDC42BPAQ5VT25 1732 aa9.39□□□□□ -0.91
VPS13B-205ENST00000493587 ABCA8O94911 1581 aa9.39□□□□□ -0.91
VPS13B-205ENST00000493587 PTPN23Q9H3S7 1636 aa9.38□□□□□ -0.91
VPS13B-205ENST00000493587 KCNH8Q96L42 1107 aa9.38□□□□□ -0.91
VPS13B-205ENST00000493587 ADGBQ8N7X0 1667 aa9.38□□□□□ -0.91
VPS13B-205ENST00000493587 POLR1AO95602 1720 aaPredicted RBP9.38□□□□□ -0.91
VPS13B-205ENST00000493587 PHLDB1Q86UU1 1377 aa9.38□□□□□ -0.91
VPS13B-205ENST00000493587 GRIN2AQ12879 1464 aa9.38□□□□□ -0.91
VPS13B-205ENST00000493587 LAS1LQ9Y4W2 734 aaKnown RBP9.38□□□□□ -0.91
VPS13B-205ENST00000493587 KDM6BO15054 1643 aa9.37□□□□□ -0.91
VPS13B-205ENST00000493587 DHX57Q6P158 1386 aaKnown RBP9.37□□□□□ -0.91
VPS13B-205ENST00000493587 DNMT1P26358 1616 aaKnown RBP9.36□□□□□ -0.91
VPS13B-205ENST00000493587 FHOD3Q2V2M9 1422 aa9.36□□□□□ -0.91
VPS13B-205ENST00000493587 KIAA0586Q9BVV6 1533 aa9.35□□□□□ -0.91
VPS13B-205ENST00000493587 TDRD9Q8NDG6 1382 aaKnown RBP9.35□□□□□ -0.91
VPS13B-205ENST00000493587 CCDC18Q5T9S5 1454 aa9.35□□□□□ -0.91
VPS13B-205ENST00000493587 HNRNPUL2Q1KMD3 747 aaKnown RBP9.35□□□□□ -0.91
VPS13B-205ENST00000493587 NAP1L5Q96NT1 182 aaPredicted RBP9.35□□□□□ -0.91
VPS13B-205ENST00000493587 PTPRKQ15262 1439 aa9.34□□□□□ -0.91
VPS13B-205ENST00000493587 FMN1Q68DA7 1419 aa9.33□□□□□ -0.92
VPS13B-205ENST00000493587 ITSN2Q9NZM3 1697 aa9.33□□□□□ -0.92
VPS13B-205ENST00000493587 NPM2Q86SE8 214 aaKnown RBP9.33□□□□□ -0.92
VPS13B-205ENST00000493587 EPRSP07814 1512 aaKnown RBP9.33□□□□□ -0.92
VPS13B-205ENST00000493587 NUP153P49790 1475 aaKnown RBP9.32□□□□□ -0.92
VPS13B-205ENST00000493587 AKNAQ7Z591 1439 aa9.32□□□□□ -0.92
VPS13B-205ENST00000493587 CLASP1Q7Z460 1538 aa9.32□□□□□ -0.92
VPS13B-205ENST00000493587 SYNJ2O15056 1496 aa9.32□□□□□ -0.92
VPS13B-205ENST00000493587 HSP90AA1P07900 732 aaKnown RBP9.32□□□□□ -0.92
VPS13B-205ENST00000493587 CDC42BPBQ9Y5S2 1711 aa9.32□□□□□ -0.92
VPS13B-205ENST00000493587 CCNB3Q8WWL7 1395 aa9.31□□□□□ -0.92
VPS13B-205ENST00000493587 IPO9Q96P70 1041 aaKnown RBP9.3□□□□□ -0.92
VPS13B-205ENST00000493587 KIF14Q15058 1648 aa9.3□□□□□ -0.92
VPS13B-205ENST00000493587 TAF7LQ5H9L4 462 aa9.3□□□□□ -0.92
VPS13B-205ENST00000493587 C11orf95C9JLR9 678 aaPredicted RBP9.29□□□□□ -0.92
VPS13B-205ENST00000493587 PAXIP1Q6ZW49 1069 aaPredicted RBP9.29□□□□□ -0.92
VPS13B-205ENST00000493587 NCOA2Q15596 1464 aa9.29□□□□□ -0.92
VPS13B-205ENST00000493587 ARID4BQ4LE39 1312 aaPredicted RBP9.29□□□□□ -0.92
VPS13B-205ENST00000493587 FGD6Q6ZV73 1430 aa9.28□□□□□ -0.92
VPS13B-205ENST00000493587 PREX2Q70Z35 1606 aa9.26□□□□□ -0.93
VPS13B-205ENST00000493587 CDK13Q14004 1512 aaKnown RBP9.26□□□□□ -0.93
VPS13B-205ENST00000493587 ABCC10Q5T3U5 1492 aa9.26□□□□□ -0.93
VPS13B-205ENST00000493587 HFM1A2PYH4 1435 aa9.26□□□□□ -0.93
VPS13B-205ENST00000493587 B4GALNT3Q6L9W6 998 aa9.26□□□□□ -0.93
VPS13B-205ENST00000493587 RRP9O43818 475 aaKnown RBP9.25□□□□□ -0.93
VPS13B-205ENST00000493587 GSE1Q14687 1217 aa9.25□□□□□ -0.93
VPS13B-205ENST00000493587 MYOM3Q5VTT5 1437 aa9.24□□□□□ -0.93
VPS13B-205ENST00000493587 FAM43AQ8N2R8 423 aa9.24□□□□□ -0.93
VPS13B-205ENST00000493587 USP35Q9P2H5 1018 aa9.24□□□□□ -0.93
VPS13B-205ENST00000493587 KDM5DQ9BY66 1539 aa9.23□□□□□ -0.93
VPS13B-205ENST00000493587 BBXQ8WY36 941 aaPredicted RBP9.23□□□□□ -0.93
VPS13B-205ENST00000493587 PPP4R2Q9NY27 417 aa9.23□□□□□ -0.93
VPS13B-205ENST00000493587 MAST1Q9Y2H9 1570 aa9.23□□□□□ -0.93
VPS13B-205ENST00000493587 PPM1GO15355 546 aaPredicted RBP9.23□□□□□ -0.93
VPS13B-205ENST00000493587 ADGRL2O95490 1459 aa9.23□□□□□ -0.93
VPS13B-205ENST00000493587 ERCC6Q03468 1493 aa9.23□□□□□ -0.93
VPS13B-205ENST00000493587 WASHC2AQ641Q2 1341 aa9.22□□□□□ -0.93
VPS13B-205ENST00000493587 MIA2Q96PC5 1412 aa9.22□□□□□ -0.93
VPS13B-205ENST00000493587 ARHGEF5Q12774 1597 aa9.22□□□□□ -0.93
VPS13B-205ENST00000493587 NAIPQ13075 1403 aa9.21□□□□□ -0.93
VPS13B-205ENST00000493587 CHMP4BQ9H444 224 aaKnown RBP9.21□□□□□ -0.93
VPS13B-205ENST00000493587 WASHC2CQ9Y4E1 1318 aa9.21□□□□□ -0.94
VPS13B-205ENST00000493587 RGS3P49796 1198 aa9.21□□□□□ -0.94
VPS13B-205ENST00000493587 NAP1L2Q9ULW6 460 aaPredicted RBP9.21□□□□□ -0.94
VPS13B-205ENST00000493587 PNNQ9H307 717 aaKnown RBP9.2□□□□□ -0.94
VPS13B-205ENST00000493587 DDX10Q13206 875 aaKnown RBP9.19□□□□□ -0.94
VPS13B-205ENST00000493587 RAB3GAP2Q9H2M9 1393 aa9.19□□□□□ -0.94
VPS13B-205ENST00000493587 ERCC6L2Q5T890 1561 aa9.18□□□□□ -0.94
VPS13B-205ENST00000493587 FRAT1Q92837 279 aaPredicted RBP9.18□□□□□ -0.94
VPS13B-205ENST00000493587 SETD5Q9C0A6 1442 aa9.18□□□□□ -0.94
VPS13B-205ENST00000493587 HNRNPUQ00839 825 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS13B-205ENST00000493587 UNC13BO14795 1591 aa9.17□□□□□ -0.94
VPS13B-205ENST00000493587 SAMD9LQ8IVG5 1584 aa9.17□□□□□ -0.94
VPS13B-205ENST00000493587 MBD5Q9P267 1494 aa9.17□□□□□ -0.94
VPS13B-205ENST00000493587 CANXP27824 592 aaKnown RBP9.17□□□□□ -0.94
VPS13B-205ENST00000493587 ARXQ96QS3 562 aa9.17□□□□□ -0.94
VPS13B-205ENST00000493587 PLXNC1O60486 1568 aa9.16□□□□□ -0.94
VPS13B-205ENST00000493587 SHANK2Q9UPX8 1470 aa9.16□□□□□ -0.94
VPS13B-205ENST00000493587 MYO5CQ9NQX4 1742 aa9.16□□□□□ -0.94
VPS13B-205ENST00000493587 DEPDC5O75140 1603 aa9.15□□□□□ -0.94
VPS13B-205ENST00000493587 ZCCHC11Q5TAX3 1644 aaKnown RBP9.15□□□□□ -0.94
VPS13B-205ENST00000493587 NCBP3Q53F19 620 aaKnown RBP9.15□□□□□ -0.94
VPS13B-205ENST00000493587 DHX37Q8IY37 1157 aaKnown RBP9.15□□□□□ -0.94
VPS13B-205ENST00000493587 TTC37Q6PGP7 1564 aa9.15□□□□□ -0.94
VPS13B-205ENST00000493587 AMER1Q5JTC6 1135 aaPredicted RBP9.15□□□□□ -0.94
VPS13B-205ENST00000493587 BCORL1Q5H9F3 1711 aa9.15□□□□□ -0.95
VPS13B-205ENST00000493587 ANP32CO43423 234 aa9.15□□□□□ -0.95
VPS13B-205ENST00000493587 ZNF326Q5BKZ1 582 aaKnown RBP9.15□□□□□ -0.95
VPS13B-205ENST00000493587 CNGB1Q14028 1251 aaPredicted RBP9.14□□□□□ -0.95
VPS13B-205ENST00000493587 MAGI2Q86UL8 1455 aa9.14□□□□□ -0.95
VPS13B-205ENST00000493587 ROCK1Q13464 1354 aa9.14□□□□□ -0.95
VPS13B-205ENST00000493587 UACAQ9BZF9 1416 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms