RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 EXOC5O00471 708 aa4.9□□□□□ -1.62
CSMD3-207ENST00000493303 ARAP3Q8WWN8 1544 aa4.9□□□□□ -1.62
CSMD3-207ENST00000493303 CCER1Q8TC90 406 aaPredicted RBP4.9□□□□□ -1.63
CSMD3-207ENST00000493303 PCF11O94913 1555 aaKnown RBP4.9□□□□□ -1.63
CSMD3-207ENST00000493303 TSPYL2Q9H2G4 693 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-207ENST00000493303 LAMC1P11047 1609 aa4.89□□□□□ -1.63
CSMD3-207ENST00000493303 LMTK3Q96Q04 1460 aa4.89□□□□□ -1.63
CSMD3-207ENST00000493303 CUL7Q14999 1698 aa4.89□□□□□ -1.63
CSMD3-207ENST00000493303 NBPF8Q3BBV2 869 aa4.89□□□□□ -1.63
CSMD3-207ENST00000493303 NBPF14Q5TI25 921 aa4.89□□□□□ -1.63
CSMD3-207ENST00000493303 MAGI3Q5TCQ9 1506 aa4.88□□□□□ -1.63
CSMD3-207ENST00000493303 ZRANB1Q9UGI0 708 aa4.88□□□□□ -1.63
CSMD3-207ENST00000493303 KDM5AP29375 1690 aaKnown RBP4.87□□□□□ -1.63
CSMD3-207ENST00000493303 HECW2Q9P2P5 1572 aa4.87□□□□□ -1.63
CSMD3-207ENST00000493303 LTBP4Q8N2S1 1624 aa4.86□□□□□ -1.63
CSMD3-207ENST00000493303 RBM27Q9P2N5 1060 aaKnown RBP4.86□□□□□ -1.63
CSMD3-207ENST00000493303 KLHL34Q8N239 644 aa4.86□□□□□ -1.63
CSMD3-207ENST00000493303 CABP1Q9NZU7 370 aa4.86□□□□□ -1.63
CSMD3-207ENST00000493303 ABCA8O94911 1581 aa4.85□□□□□ -1.63
CSMD3-207ENST00000493303 NCLP19338 710 aaKnown RBP4.85□□□□□ -1.63
CSMD3-207ENST00000493303 CNKSR2Q8WXI2 1034 aa4.85□□□□□ -1.63
CSMD3-207ENST00000493303 PPP6R1Q9UPN7 881 aa4.85□□□□□ -1.63
CSMD3-207ENST00000493303 UGGT2Q9NYU1 1516 aa4.85□□□□□ -1.63
CSMD3-207ENST00000493303 COL24A1Q17RW2 1714 aa4.85□□□□□ -1.63
CSMD3-207ENST00000493303 XIRP1Q702N8 1843 aaKnown RBP4.84□□□□□ -1.63
CSMD3-207ENST00000493303 CHGAP10645 457 aaKnown RBP4.84□□□□□ -1.64
CSMD3-207ENST00000493303 SAMD9Q5K651 1589 aa4.84□□□□□ -1.64
CSMD3-207ENST00000493303 CLSPNQ9HAW4 1339 aa4.84□□□□□ -1.64
CSMD3-207ENST00000493303 ANP32EQ9BTT0 268 aa4.83□□□□□ -1.64
CSMD3-207ENST00000493303 LMOD2Q6P5Q4 547 aa4.83□□□□□ -1.64
CSMD3-207ENST00000493303 PAXIP1Q6ZW49 1069 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-207ENST00000493303 NCBP3Q53F19 620 aaKnown RBP4.83□□□□□ -1.64
CSMD3-207ENST00000493303 GRIN2AQ12879 1464 aa4.83□□□□□ -1.64
CSMD3-207ENST00000493303 CAMSAP2Q08AD1 1489 aa4.83□□□□□ -1.64
CSMD3-207ENST00000493303 OSCARQ8IYS5 282 aa4.82□□□□□ -1.64
CSMD3-207ENST00000493303 RSPH6AQ9H0K4 717 aa4.82□□□□□ -1.64
CSMD3-207ENST00000493303 FAM135AQ9P2D6 1515 aa4.82□□□□□ -1.64
CSMD3-207ENST00000493303 EID1Q9Y6B2 187 aa4.82□□□□□ -1.64
CSMD3-207ENST00000493303 ABCC2Q92887 1545 aa4.82□□□□□ -1.64
CSMD3-207ENST00000493303 POGZQ7Z3K3 1410 aa4.81□□□□□ -1.64
CSMD3-207ENST00000493303 GCC1Q96CN9 775 aa4.81□□□□□ -1.64
CSMD3-207ENST00000493303 KDM5CP41229 1560 aa4.81□□□□□ -1.64
CSMD3-207ENST00000493303 MSH5O43196 834 aa4.81□□□□□ -1.64
CSMD3-207ENST00000493303 CCAR1Q8IX12 1150 aaKnown RBP4.81□□□□□ -1.64
CSMD3-207ENST00000493303 GRIN2BQ13224 1484 aa4.81□□□□□ -1.64
CSMD3-207ENST00000493303 VAMP4O75379 141 aa4.8□□□□□ -1.64
CSMD3-207ENST00000493303 POLD1P28340 1107 aa4.8□□□□□ -1.64
CSMD3-207ENST00000493303 CTDP1Q9Y5B0 961 aaPredicted RBP4.8□□□□□ -1.64
CSMD3-207ENST00000493303 CCDC88BA6NC98 1476 aa4.8□□□□□ -1.64
CSMD3-207ENST00000493303 C11orf95C9JLR9 678 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-207ENST00000493303 AMER1Q5JTC6 1135 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-207ENST00000493303 NGLY1Q96IV0 654 aa4.79□□□□□ -1.64
CSMD3-207ENST00000493303 PREX1Q8TCU6 1659 aa4.79□□□□□ -1.64
CSMD3-207ENST00000493303 KIF7Q2M1P5 1343 aa4.79□□□□□ -1.64
CSMD3-207ENST00000493303 KAT6BQ8WYB5 2073 aa4.79□□□□□ -1.64
CSMD3-207ENST00000493303 DISP3Q9P2K9 1392 aa4.79□□□□□ -1.64
CSMD3-207ENST00000493303 ARHGEF12Q9NZN5 1544 aa4.79□□□□□ -1.64
CSMD3-207ENST00000493303 TMEM87AQ8NBN3 555 aa4.79□□□□□ -1.64
CSMD3-207ENST00000493303 ARHGEF40Q8TER5 1519 aa4.79□□□□□ -1.64
CSMD3-207ENST00000493303 ACIN1Q9UKV3 1341 aaKnown RBP4.78□□□□□ -1.64
CSMD3-207ENST00000493303 RDXP35241 583 aaKnown RBP4.78□□□□□ -1.64
CSMD3-207ENST00000493303 ZCCHC11Q5TAX3 1644 aaKnown RBP4.78□□□□□ -1.64
CSMD3-207ENST00000493303 NUTM2BA6NNL0 878 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-207ENST00000493303 NUTM2EB1AL46 878 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-207ENST00000493303 TOM1O60784 492 aa4.78□□□□□ -1.64
CSMD3-207ENST00000493303 NUTM2DQ5VT03 806 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-207ENST00000493303 NUTM2AQ8IVF1 878 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-207ENST00000493303 NOLC1Q14978 699 aaKnown RBP eCLIP4.77□□□□□ -1.65
CSMD3-207ENST00000493303 E9PSI1 815 aa4.77□□□□□ -1.65
CSMD3-207ENST00000493303 CHMP4AQ9BY43 222 aa4.77□□□□□ -1.65
CSMD3-207ENST00000493303 PLXNC1O60486 1568 aa4.77□□□□□ -1.65
CSMD3-207ENST00000493303 RAB11FIP4Q86YS3 637 aa4.77□□□□□ -1.65
CSMD3-207ENST00000493303 CTTNBP2Q8WZ74 1663 aa4.77□□□□□ -1.65
CSMD3-207ENST00000493303 RAPGEF6Q8TEU7 1601 aa4.77□□□□□ -1.65
CSMD3-207ENST00000493303 GAPVD1Q14C86 1478 aa4.77□□□□□ -1.65
CSMD3-207ENST00000493303 CCDC174Q6PII3 467 aa4.76□□□□□ -1.65
CSMD3-207ENST00000493303 ZC3H13Q5T200 1668 aaKnown RBP4.76□□□□□ -1.65
CSMD3-207ENST00000493303 SPDYE4A6NLX3 237 aa4.76□□□□□ -1.65
CSMD3-207ENST00000493303 DISP1Q96F81 1524 aa4.76□□□□□ -1.65
CSMD3-207ENST00000493303 KIF14Q15058 1648 aa4.75□□□□□ -1.65
CSMD3-207ENST00000493303 LRRIQ1Q96JM4 1722 aa4.75□□□□□ -1.65
CSMD3-207ENST00000493303 RBM28Q9NW13 759 aaKnown RBP4.75□□□□□ -1.65
CSMD3-207ENST00000493303 WWC2Q6AWC2 1192 aa4.75□□□□□ -1.65
CSMD3-207ENST00000493303 CRBNQ96SW2 442 aa4.75□□□□□ -1.65
CSMD3-207ENST00000493303 SRPK2P78362 688 aaKnown RBP4.75□□□□□ -1.65
CSMD3-207ENST00000493303 COG6Q9Y2V7 657 aa4.74□□□□□ -1.65
CSMD3-207ENST00000493303 SECISBP2LQ93073 1101 aaKnown RBP4.74□□□□□ -1.65
CSMD3-207ENST00000493303 AGLP35573 1532 aa4.74□□□□□ -1.65
CSMD3-207ENST00000493303 ZBTB24O43167 697 aaPredicted RBP4.73□□□□□ -1.65
CSMD3-207ENST00000493303 CLEC11AQ9Y240 323 aa4.73□□□□□ -1.65
CSMD3-207ENST00000493303 NBPF20Q3BBV1 942 aa4.73□□□□□ -1.65
CSMD3-207ENST00000493303 HMGB1P09429 215 aaKnown RBP4.72□□□□□ -1.65
CSMD3-207ENST00000493303 DEPDC5O75140 1603 aa4.72□□□□□ -1.65
CSMD3-207ENST00000493303 HSP90B1P14625 803 aaKnown RBP4.72□□□□□ -1.65
CSMD3-207ENST00000493303 WWC1Q8IX03 1113 aa4.72□□□□□ -1.65
CSMD3-207ENST00000493303 STAC3Q96MF2 364 aa4.72□□□□□ -1.65
CSMD3-207ENST00000493303 PRM3Q9NNZ6 103 aa4.72□□□□□ -1.65
CSMD3-207ENST00000493303 TRIM34Q9BYJ4 488 aa4.72□□□□□ -1.65
CSMD3-207ENST00000493303 LPXNO60711 386 aa4.71□□□□□ -1.65
CSMD3-207ENST00000493303 FGD5Q6ZNL6 1462 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms