RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CAMSAP2Q08AD1 1489 aa30.51■■■□□ 2.47
CCDC88B-208ENST00000492980 PTPRGP23470 1445 aa30.5■■■□□ 2.47
CCDC88B-208ENST00000492980 CFDP1Q9UEE9 299 aaPredicted RBP30.46■■■□□ 2.47
CCDC88B-208ENST00000492980 PLEKHD1A6NEE1 506 aa30.44■■■□□ 2.46
CCDC88B-208ENST00000492980 CDC42BPAQ5VT25 1732 aa30.44■■■□□ 2.46
CCDC88B-208ENST00000492980 DENND4BO75064 1496 aaPredicted RBP30.44■■■□□ 2.46
CCDC88B-208ENST00000492980 ABCC10Q5T3U5 1492 aa30.44■■■□□ 2.46
CCDC88B-208ENST00000492980 PPP1R15AO75807 674 aaPredicted RBP30.41■■■□□ 2.46
CCDC88B-208ENST00000492980 CROCC2H7BZ55 1655 aa30.4■■■□□ 2.46
CCDC88B-208ENST00000492980 ADGBQ8N7X0 1667 aa30.39■■■□□ 2.46
CCDC88B-208ENST00000492980 TONSLQ96HA7 1378 aa30.39■■■□□ 2.46
CCDC88B-208ENST00000492980 TRIM52Q96A61 297 aa30.37■■■□□ 2.45
CCDC88B-208ENST00000492980 ERCC6L2Q5T890 1561 aa30.35■■■□□ 2.45
CCDC88B-208ENST00000492980 ACIN1Q9UKV3 1341 aaKnown RBP30.33■■■□□ 2.45
CCDC88B-208ENST00000492980 CLASP1Q7Z460 1538 aa30.32■■■□□ 2.44
CCDC88B-208ENST00000492980 ADGRL2O95490 1459 aa30.31■■■□□ 2.44
CCDC88B-208ENST00000492980 ZNF777Q9ULD5 760 aaPredicted RBP30.31■■■□□ 2.44
CCDC88B-208ENST00000492980 MPHOSPH9Q99550 1183 aa30.3■■■□□ 2.44
CCDC88B-208ENST00000492980 CENPBP07199 599 aaPredicted RBP30.29■■■□□ 2.44
CCDC88B-208ENST00000492980 KDM5BQ9UGL1 1544 aa30.29■■■□□ 2.44
CCDC88B-208ENST00000492980 NCOA1Q15788 1441 aa30.29■■■□□ 2.44
CCDC88B-208ENST00000492980 ABCC2Q92887 1545 aa30.25■■■□□ 2.43
CCDC88B-208ENST00000492980 SHANK2Q9UPX8 1470 aa30.22■■■□□ 2.43
CCDC88B-208ENST00000492980 SCAF1Q9H7N4 1312 aaKnown RBP30.22■■■□□ 2.43
CCDC88B-208ENST00000492980 PREX2Q70Z35 1606 aa30.21■■■□□ 2.43
CCDC88B-208ENST00000492980 CDC42BPBQ9Y5S2 1711 aa30.19■■■□□ 2.42
CCDC88B-208ENST00000492980 ANKRD30AQ9BXX3 1397 aa30.18■■■□□ 2.42
CCDC88B-208ENST00000492980 ARHGEF5Q12774 1597 aa30.16■■■□□ 2.42
CCDC88B-208ENST00000492980 YTHDC1Q96MU7 727 aaKnown RBP30.14■■■□□ 2.42
CCDC88B-208ENST00000492980 C9orf84Q5VXU9 1444 aa30.14■■■□□ 2.42
CCDC88B-208ENST00000492980 PZPP20742 1482 aa30.14■■■□□ 2.42
CCDC88B-208ENST00000492980 SAMD9LQ8IVG5 1584 aa30.14■■■□□ 2.42
CCDC88B-208ENST00000492980 ANKRD30BQ9BXX2 1392 aa30.14■■■□□ 2.42
CCDC88B-208ENST00000492980 FOXD1Q16676 465 aa30.13■■■□□ 2.41
CCDC88B-208ENST00000492980 TTC37Q6PGP7 1564 aa30.12■■■□□ 2.41
CCDC88B-208ENST00000492980 MBD5Q9P267 1494 aa30.11■■■□□ 2.41
CCDC88B-208ENST00000492980 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.1■■■□□ 2.41
CCDC88B-208ENST00000492980 SLC4A1APQ9BWU0 796 aaKnown RBP30.09■■■□□ 2.41
CCDC88B-208ENST00000492980 UHRF1BP1LA0JNW5 1464 aa30.08■■■□□ 2.41
CCDC88B-208ENST00000492980 ANKRD50Q9ULJ7 1429 aa30.08■■■□□ 2.41
CCDC88B-208ENST00000492980 RPRD2Q5VT52 1461 aaKnown RBP30.08■■■□□ 2.41
CCDC88B-208ENST00000492980 ZCCHC11Q5TAX3 1644 aaKnown RBP30.06■■■□□ 2.4
CCDC88B-208ENST00000492980 CCDC141Q6ZP82 1450 aa30.04■■■□□ 2.4
CCDC88B-208ENST00000492980 HNRNPMP52272 730 aaKnown RBP eCLIP30.04■■■□□ 2.4
CCDC88B-208ENST00000492980 HIRIP3Q9BW71 556 aaPredicted RBP30.04■■■□□ 2.4
CCDC88B-208ENST00000492980 MYO5CQ9NQX4 1742 aa30.03■■■□□ 2.4
CCDC88B-208ENST00000492980 TSPY4P0CV99 314 aa30.02■■■□□ 2.4
CCDC88B-208ENST00000492980 TSPY10P0CW01 314 aa30.02■■■□□ 2.4
CCDC88B-208ENST00000492980 ARHGAP5Q13017 1502 aa30.01■■■□□ 2.39
CCDC88B-208ENST00000492980 TEX14Q8IWB6 1497 aa29.99■■■□□ 2.39
CCDC88B-208ENST00000492980 DDX10Q13206 875 aaKnown RBP29.99■■■□□ 2.39
CCDC88B-208ENST00000492980 L3MBTL2Q969R5 705 aa29.99■■■□□ 2.39
CCDC88B-208ENST00000492980 SYCP2Q9BX26 1530 aa29.97■■■□□ 2.39
CCDC88B-208ENST00000492980 KIAA1107Q9UPP5 1409 aa29.97■■■□□ 2.39
CCDC88B-208ENST00000492980 KIF15Q9NS87 1388 aa29.96■■■□□ 2.39
CCDC88B-208ENST00000492980 KDM5DQ9BY66 1539 aa29.96■■■□□ 2.39
CCDC88B-208ENST00000492980 RSPH4AQ5TD94 716 aa29.95■■■□□ 2.38
CCDC88B-208ENST00000492980 MAST1Q9Y2H9 1570 aa29.94■■■□□ 2.38
CCDC88B-208ENST00000492980 PLEKHH2Q8IVE3 1493 aa29.89■■■□□ 2.38
CCDC88B-208ENST00000492980 PKD2Q13563 968 aa29.88■■■□□ 2.37
CCDC88B-208ENST00000492980 KCNH8Q96L42 1107 aa29.88■■■□□ 2.37
CCDC88B-208ENST00000492980 NUP155O75694 1391 aa29.88■■■□□ 2.37
CCDC88B-208ENST00000492980 PLCH2O75038 1416 aa29.85■■■□□ 2.37
CCDC88B-208ENST00000492980 GTF3C3Q9Y5Q9 886 aa29.84■■■□□ 2.37
CCDC88B-208ENST00000492980 PLXNC1O60486 1568 aa29.82■■■□□ 2.36
CCDC88B-208ENST00000492980 HSPA5P11021 654 aaKnown RBP29.81■■■□□ 2.36
CCDC88B-208ENST00000492980 ARHGEF12Q9NZN5 1544 aa29.81■■■□□ 2.36
CCDC88B-208ENST00000492980 NBPF8Q3BBV2 869 aa29.8■■■□□ 2.36
CCDC88B-208ENST00000492980 EIF4G2P78344 907 aaKnown RBP eCLIP29.77■■■□□ 2.36
CCDC88B-208ENST00000492980 ABCC1P33527 1531 aa29.77■■■□□ 2.36
CCDC88B-208ENST00000492980 UNC13BO14795 1591 aa29.75■■■□□ 2.35
CCDC88B-208ENST00000492980 FAM135AQ9P2D6 1515 aa29.74■■■□□ 2.35
CCDC88B-208ENST00000492980 EFCAB2Q5VUJ9 269 aa29.74■■■□□ 2.35
CCDC88B-208ENST00000492980 ARAP3Q8WWN8 1544 aa29.73■■■□□ 2.35
CCDC88B-208ENST00000492980 WDR7Q9Y4E6 1490 aa29.72■■■□□ 2.35
CCDC88B-208ENST00000492980 WASHC2AQ641Q2 1341 aa29.69■■■□□ 2.34
CCDC88B-208ENST00000492980 DUOX2Q9NRD8 1548 aa29.68■■■□□ 2.34
CCDC88B-208ENST00000492980 ANP32CO43423 234 aa29.66■■■□□ 2.34
CCDC88B-208ENST00000492980 SPATA31E1Q6ZUB1 1445 aa29.64■■■□□ 2.34
CCDC88B-208ENST00000492980 TRAPPC8Q9Y2L5 1435 aa29.64■■■□□ 2.34
CCDC88B-208ENST00000492980 IQGAP3Q86VI3 1631 aa29.63■■■□□ 2.33
CCDC88B-208ENST00000492980 ABCA9Q8IUA7 1624 aa29.63■■■□□ 2.33
CCDC88B-208ENST00000492980 ERBINQ96RT1 1412 aa29.62■■■□□ 2.33
CCDC88B-208ENST00000492980 CCER2I3L3R5 266 aa29.62■■■□□ 2.33
CCDC88B-208ENST00000492980 MAGI2Q86UL8 1455 aa29.6■■■□□ 2.33
CCDC88B-208ENST00000492980 UHRF1BP1Q6BDS2 1440 aa29.6■■■□□ 2.33
CCDC88B-208ENST00000492980 OSCARQ8IYS5 282 aa29.59■■■□□ 2.33
CCDC88B-208ENST00000492980 POLR1AO95602 1720 aaPredicted RBP29.59■■■□□ 2.33
CCDC88B-208ENST00000492980 CCDC7Q96M83 1385 aa29.56■■■□□ 2.32
CCDC88B-208ENST00000492980 ASXL2Q76L83 1435 aa29.55■■■□□ 2.32
CCDC88B-208ENST00000492980 C11orf95C9JLR9 678 aaPredicted RBP29.54■■■□□ 2.32
CCDC88B-208ENST00000492980 ZFYVE16Q7Z3T8 1539 aa29.54■■■□□ 2.32
CCDC88B-208ENST00000492980 RTEL1-TNFRSF6BF6WH68 1400 aa29.53■■■□□ 2.32
CCDC88B-208ENST00000492980 FANCAO15360 1455 aa29.52■■■□□ 2.32
CCDC88B-208ENST00000492980 RALGAPBQ86X10 1494 aa29.52■■■□□ 2.32
CCDC88B-208ENST00000492980 CNTLNQ9NXG0 1405 aa29.52■■■□□ 2.32
CCDC88B-208ENST00000492980 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.51■■■□□ 2.32
CCDC88B-208ENST00000492980 ZNF326Q5BKZ1 582 aaKnown RBP29.5■■■□□ 2.31
CCDC88B-208ENST00000492980 KDM5CP41229 1560 aa29.5■■■□□ 2.31
CCDC88B-208ENST00000492980 PLA2R1Q13018 1463 aa29.5■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 215.4 ms