RNA–Protein interactions for RNA: ENST00000491433.1

CLCNKA-206, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 3

Gene CLCNKA, Length 824 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-206ENST00000491433 DENND4BO75064 1496 aaPredicted RBP18.94■□□□□ 0.62
CLCNKA-206ENST00000491433 CEBPAP49715 358 aaPredicted RBP18.93■□□□□ 0.62
CLCNKA-206ENST00000491433 SCAF1Q9H7N4 1312 aaKnown RBP18.92■□□□□ 0.62
CLCNKA-206ENST00000491433 RICTORQ6R327 1708 aa18.91■□□□□ 0.62
CLCNKA-206ENST00000491433 PLEKHD1A6NEE1 506 aa18.9■□□□□ 0.62
CLCNKA-206ENST00000491433 FHOD3Q2V2M9 1422 aa18.89■□□□□ 0.61
CLCNKA-206ENST00000491433 NUP153P49790 1475 aaKnown RBP18.88■□□□□ 0.61
CLCNKA-206ENST00000491433 EFCAB5A4FU69 1503 aa18.88■□□□□ 0.61
CLCNKA-206ENST00000491433 ZFYVE16Q7Z3T8 1539 aa18.87■□□□□ 0.61
CLCNKA-206ENST00000491433 ZMYM4Q5VZL5 1548 aa18.86■□□□□ 0.61
CLCNKA-206ENST00000491433 ARHGEF12Q9NZN5 1544 aa18.86■□□□□ 0.61
CLCNKA-206ENST00000491433 MAGI2Q86UL8 1455 aa18.86■□□□□ 0.61
CLCNKA-206ENST00000491433 NCOA1Q15788 1441 aa18.84■□□□□ 0.61
CLCNKA-206ENST00000491433 ZNF335Q9H4Z2 1342 aaPredicted RBP18.84■□□□□ 0.61
CLCNKA-206ENST00000491433 SIGLEC1Q9BZZ2 1709 aa18.84■□□□□ 0.61
CLCNKA-206ENST00000491433 PIP4K2BP78356 416 aa18.84■□□□□ 0.61
CLCNKA-206ENST00000491433 CSRNP3Q8WYN3 585 aa18.84■□□□□ 0.61
CLCNKA-206ENST00000491433 SETD1BQ9UPS6 1966 aaKnown RBP18.82■□□□□ 0.6
CLCNKA-206ENST00000491433 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.81■□□□□ 0.6
CLCNKA-206ENST00000491433 TOM1O60784 492 aa18.79■□□□□ 0.6
CLCNKA-206ENST00000491433 EEA1Q15075 1411 aa18.77■□□□□ 0.6
CLCNKA-206ENST00000491433 HECW1Q76N89 1606 aa18.75■□□□□ 0.59
CLCNKA-206ENST00000491433 ATP10AO60312 1499 aa18.72■□□□□ 0.59
CLCNKA-206ENST00000491433 RANGAP1P46060 587 aaPredicted RBP18.72■□□□□ 0.59
CLCNKA-206ENST00000491433 PLCH2O75038 1416 aa18.72■□□□□ 0.59
CLCNKA-206ENST00000491433 SCAPERQ9BY12 1400 aa18.72■□□□□ 0.59
CLCNKA-206ENST00000491433 C9orf84Q5VXU9 1444 aa18.71■□□□□ 0.59
CLCNKA-206ENST00000491433 TRAPPC8Q9Y2L5 1435 aa18.69■□□□□ 0.58
CLCNKA-206ENST00000491433 RGS17Q9UGC6 210 aaPredicted RBP18.69■□□□□ 0.58
CLCNKA-206ENST00000491433 CAMSAP1Q5T5Y3 1602 aa18.67■□□□□ 0.58
CLCNKA-206ENST00000491433 EFCAB2Q5VUJ9 269 aa18.67■□□□□ 0.58
CLCNKA-206ENST00000491433 MYO5CQ9NQX4 1742 aa18.66■□□□□ 0.58
CLCNKA-206ENST00000491433 NCKAP5LQ9HCH0 1330 aa18.66■□□□□ 0.58
CLCNKA-206ENST00000491433 CDK11AQ9UQ88 783 aaPredicted RBP18.65■□□□□ 0.58
CLCNKA-206ENST00000491433 ZNF518AQ6AHZ1 1483 aa18.64■□□□□ 0.57
CLCNKA-206ENST00000491433 CDK13Q14004 1512 aaKnown RBP18.64■□□□□ 0.57
CLCNKA-206ENST00000491433 PKD2Q13563 968 aa18.63■□□□□ 0.57
CLCNKA-206ENST00000491433 ESF1Q9H501 851 aaKnown RBP18.63■□□□□ 0.57
CLCNKA-206ENST00000491433 FMN1Q68DA7 1419 aa18.6■□□□□ 0.57
CLCNKA-206ENST00000491433 C3P01024 1663 aa18.59■□□□□ 0.57
CLCNKA-206ENST00000491433 PTPRKQ15262 1439 aa18.58■□□□□ 0.57
CLCNKA-206ENST00000491433 PPP6R1Q9UPN7 881 aa18.58■□□□□ 0.56
CLCNKA-206ENST00000491433 KIF14Q15058 1648 aa18.58■□□□□ 0.56
CLCNKA-206ENST00000491433 KDM5CP41229 1560 aa18.57■□□□□ 0.56
CLCNKA-206ENST00000491433 REREQ9P2R6 1566 aa18.57■□□□□ 0.56
CLCNKA-206ENST00000491433 MYT1LQ9UL68 1186 aa18.57■□□□□ 0.56
CLCNKA-206ENST00000491433 ATP1B4Q9UN42 357 aaPredicted RBP18.56■□□□□ 0.56
CLCNKA-206ENST00000491433 CLIP1P30622 1438 aa18.56■□□□□ 0.56
CLCNKA-206ENST00000491433 CPS1P31327 1500 aa18.55■□□□□ 0.56
CLCNKA-206ENST00000491433 ARHGAP5Q13017 1502 aa18.55■□□□□ 0.56
CLCNKA-206ENST00000491433 POTEAQ6S8J7 498 aa18.55■□□□□ 0.56
CLCNKA-206ENST00000491433 PLA2R1Q13018 1463 aa18.54■□□□□ 0.56
CLCNKA-206ENST00000491433 SENP3Q9H4L4 574 aaPredicted RBP18.54■□□□□ 0.56
CLCNKA-206ENST00000491433 SRCAPQ6ZRS2 3230 aa18.53■□□□□ 0.56
CLCNKA-206ENST00000491433 DIP2CQ9Y2E4 1556 aa18.52■□□□□ 0.56
CLCNKA-206ENST00000491433 TROQ12816 1431 aaPredicted RBP18.52■□□□□ 0.56
CLCNKA-206ENST00000491433 AFAP1Q8N556 730 aa18.51■□□□□ 0.55
CLCNKA-206ENST00000491433 MLH3Q9UHC1 1453 aa18.51■□□□□ 0.55
CLCNKA-206ENST00000491433 NPATQ14207 1427 aa18.5■□□□□ 0.55
CLCNKA-206ENST00000491433 AGLP35573 1532 aa18.5■□□□□ 0.55
CLCNKA-206ENST00000491433 TCOF1Q13428 1488 aaKnown RBP18.5■□□□□ 0.55
CLCNKA-206ENST00000491433 CNTLNQ9NXG0 1405 aa18.49■□□□□ 0.55
CLCNKA-206ENST00000491433 ABCA6Q8N139 1617 aa18.46■□□□□ 0.55
CLCNKA-206ENST00000491433 UBTFP17480 764 aaKnown RBP18.46■□□□□ 0.55
CLCNKA-206ENST00000491433 CDC42BPBQ9Y5S2 1711 aa18.45■□□□□ 0.54
CLCNKA-206ENST00000491433 UPF1Q92900 1129 aaKnown RBP eCLIP18.44■□□□□ 0.54
CLCNKA-206ENST00000491433 ARHGAP35Q9NRY4 1499 aa18.44■□□□□ 0.54
CLCNKA-206ENST00000491433 SHANK2Q9UPX8 1470 aa18.44■□□□□ 0.54
CLCNKA-206ENST00000491433 SETD1AO15047 1707 aaKnown RBP18.43■□□□□ 0.54
CLCNKA-206ENST00000491433 PREX2Q70Z35 1606 aa18.42■□□□□ 0.54
CLCNKA-206ENST00000491433 ALKQ9UM73 1620 aa18.42■□□□□ 0.54
CLCNKA-206ENST00000491433 ABCC1P33527 1531 aa18.42■□□□□ 0.54
CLCNKA-206ENST00000491433 ITSN2Q9NZM3 1697 aa18.41■□□□□ 0.54
CLCNKA-206ENST00000491433 MROH2AA6NES4 1674 aa18.41■□□□□ 0.54
CLCNKA-206ENST00000491433 CCDC18Q5T9S5 1454 aa18.39■□□□□ 0.53
CLCNKA-206ENST00000491433 KIDINS220Q9ULH0 1771 aa18.38■□□□□ 0.53
CLCNKA-206ENST00000491433 ZNF142P52746 1687 aaPredicted RBP18.37■□□□□ 0.53
CLCNKA-206ENST00000491433 LRRIQ1Q96JM4 1722 aa18.37■□□□□ 0.53
CLCNKA-206ENST00000491433 CEP170BQ9Y4F5 1589 aaPredicted RBP18.35■□□□□ 0.53
CLCNKA-206ENST00000491433 SUPT6HQ7KZ85 1726 aaKnown RBP18.34■□□□□ 0.53
CLCNKA-206ENST00000491433 MYO3AQ8NEV4 1616 aa18.33■□□□□ 0.52
CLCNKA-206ENST00000491433 CDC42BPAQ5VT25 1732 aa18.32■□□□□ 0.52
CLCNKA-206ENST00000491433 ZMYM3Q14202 1370 aa18.32■□□□□ 0.52
CLCNKA-206ENST00000491433 CASKIN1Q8WXD9 1431 aa18.31■□□□□ 0.52
CLCNKA-206ENST00000491433 SAMD9LQ8IVG5 1584 aa18.3■□□□□ 0.52
CLCNKA-206ENST00000491433 EHMT2Q96KQ7 1210 aa18.3■□□□□ 0.52
CLCNKA-206ENST00000491433 SPAG9O60271 1321 aaKnown RBP18.28■□□□□ 0.52
CLCNKA-206ENST00000491433 CLTCQ00610 1675 aaKnown RBP18.26■□□□□ 0.51
CLCNKA-206ENST00000491433 ZNF777Q9ULD5 760 aaPredicted RBP18.26■□□□□ 0.51
CLCNKA-206ENST00000491433 RNF17Q9BXT8 1623 aaKnown RBP18.26■□□□□ 0.51
CLCNKA-206ENST00000491433 PLEKHH2Q8IVE3 1493 aa18.26■□□□□ 0.51
CLCNKA-206ENST00000491433 ATP7AQ04656 1500 aa18.24■□□□□ 0.51
CLCNKA-206ENST00000491433 SYCP2Q9BX26 1530 aa18.24■□□□□ 0.51
CLCNKA-206ENST00000491433 VWDEQ8N2E2 1590 aa18.24■□□□□ 0.51
CLCNKA-206ENST00000491433 KIAA1107Q9UPP5 1409 aa18.23■□□□□ 0.51
CLCNKA-206ENST00000491433 PLXNC1O60486 1568 aa18.22■□□□□ 0.51
CLCNKA-206ENST00000491433 A2MP01023 1474 aa18.22■□□□□ 0.51
CLCNKA-206ENST00000491433 FYCO1Q9BQS8 1478 aa18.22■□□□□ 0.51
CLCNKA-206ENST00000491433 NEURL4Q96JN8 1562 aa18.21■□□□□ 0.51
CLCNKA-206ENST00000491433 A2ML1A8K2U0 1454 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms