RNA–Protein interactions for RNA: ENST00000491292.5

ERCC3-208, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 2

Gene ERCC3, Length 4,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-208ENST00000491292 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.9□□□□□ -0.34
ERCC3-208ENST00000491292 DCAF11Q8TEB1 546 aa12.9□□□□□ -0.35
ERCC3-208ENST00000491292 SLKQ9H2G2 1235 aaPredicted RBP12.89□□□□□ -0.35
ERCC3-208ENST00000491292 PKD2Q13563 968 aa12.89□□□□□ -0.35
ERCC3-208ENST00000491292 NFKBIBQ15653 356 aa12.89□□□□□ -0.35
ERCC3-208ENST00000491292 CUX1P39880 1505 aa12.89□□□□□ -0.35
ERCC3-208ENST00000491292 FBLN2P98095 1184 aa12.89□□□□□ -0.35
ERCC3-208ENST00000491292 FRAT1Q92837 279 aaPredicted RBP12.89□□□□□ -0.35
ERCC3-208ENST00000491292 ST20-MTHFSA0A0A6YYL1 179 aa12.87□□□□□ -0.35
ERCC3-208ENST00000491292 ARID4BQ4LE39 1312 aaPredicted RBP12.87□□□□□ -0.35
ERCC3-208ENST00000491292 WDR43Q15061 677 aaKnown RBP eCLIP12.86□□□□□ -0.35
ERCC3-208ENST00000491292 DNAJC5BQ9UF47 199 aa12.86□□□□□ -0.35
ERCC3-208ENST00000491292 AQRO60306 1485 aaKnown RBP eCLIP12.86□□□□□ -0.35
ERCC3-208ENST00000491292 BACH2Q9BYV9 841 aa12.85□□□□□ -0.35
ERCC3-208ENST00000491292 USP35Q9P2H5 1018 aa12.85□□□□□ -0.35
ERCC3-208ENST00000491292 ZNF644Q9H582 1327 aaPredicted RBP12.85□□□□□ -0.35
ERCC3-208ENST00000491292 PTPRKQ15262 1439 aa12.85□□□□□ -0.35
ERCC3-208ENST00000491292 TDRD9Q8NDG6 1382 aaKnown RBP12.85□□□□□ -0.35
ERCC3-208ENST00000491292 NCAPD3P42695 1498 aa12.85□□□□□ -0.35
ERCC3-208ENST00000491292 PNISRQ8TF01 805 aaKnown RBP12.84□□□□□ -0.35
ERCC3-208ENST00000491292 NAP1L5Q96NT1 182 aaPredicted RBP12.84□□□□□ -0.35
ERCC3-208ENST00000491292 GZF1Q9H116 711 aaPredicted RBP12.84□□□□□ -0.35
ERCC3-208ENST00000491292 NAIPQ13075 1403 aa12.83□□□□□ -0.36
ERCC3-208ENST00000491292 USP47Q96K76 1375 aa12.83□□□□□ -0.36
ERCC3-208ENST00000491292 FRAT2O75474 233 aaPredicted RBP12.83□□□□□ -0.36
ERCC3-208ENST00000491292 CFDP1Q9UEE9 299 aaPredicted RBP12.83□□□□□ -0.36
ERCC3-208ENST00000491292 SMG6Q86US8 1419 aaKnown RBP12.82□□□□□ -0.36
ERCC3-208ENST00000491292 HFM1A2PYH4 1435 aa12.82□□□□□ -0.36
ERCC3-208ENST00000491292 NEUROD2Q15784 382 aa12.82□□□□□ -0.36
ERCC3-208ENST00000491292 CC2D2AQ9P2K1 1620 aa12.81□□□□□ -0.36
ERCC3-208ENST00000491292 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.81□□□□□ -0.36
ERCC3-208ENST00000491292 CFTRP13569 1480 aa12.8□□□□□ -0.36
ERCC3-208ENST00000491292 CADPSQ9ULU8 1353 aa12.8□□□□□ -0.36
ERCC3-208ENST00000491292 FGD5Q6ZNL6 1462 aa12.79□□□□□ -0.36
ERCC3-208ENST00000491292 RAD54L2Q9Y4B4 1467 aa12.79□□□□□ -0.36
ERCC3-208ENST00000491292 MYOM3Q5VTT5 1437 aa12.79□□□□□ -0.36
ERCC3-208ENST00000491292 PCF11O94913 1555 aaKnown RBP12.79□□□□□ -0.36
ERCC3-208ENST00000491292 NCOA2Q15596 1464 aa12.78□□□□□ -0.36
ERCC3-208ENST00000491292 UPF2Q9HAU5 1272 aaKnown RBP12.78□□□□□ -0.36
ERCC3-208ENST00000491292 MYBBP1AQ9BQG0 1328 aaKnown RBP12.77□□□□□ -0.36
ERCC3-208ENST00000491292 NLRP13Q86W25 1043 aa12.77□□□□□ -0.37
ERCC3-208ENST00000491292 MS4A1P11836 297 aa12.77□□□□□ -0.37
ERCC3-208ENST00000491292 C20orf194Q5TEA3 1177 aa12.77□□□□□ -0.37
ERCC3-208ENST00000491292 RALBP1Q15311 655 aa12.76□□□□□ -0.37
ERCC3-208ENST00000491292 CCDC146Q8IYE0 955 aa12.76□□□□□ -0.37
ERCC3-208ENST00000491292 CASKIN1Q8WXD9 1431 aa12.76□□□□□ -0.37
ERCC3-208ENST00000491292 TSPY4P0CV99 314 aa12.76□□□□□ -0.37
ERCC3-208ENST00000491292 TSPY10P0CW01 314 aa12.76□□□□□ -0.37
ERCC3-208ENST00000491292 KTN1Q86UP2 1357 aaKnown RBP12.75□□□□□ -0.37
ERCC3-208ENST00000491292 BECN1Q14457 450 aa12.75□□□□□ -0.37
ERCC3-208ENST00000491292 NCOA1Q15788 1441 aa12.75□□□□□ -0.37
ERCC3-208ENST00000491292 GLIPR1L2Q4G1C9 344 aa12.74□□□□□ -0.37
ERCC3-208ENST00000491292 KIF15Q9NS87 1388 aa12.74□□□□□ -0.37
ERCC3-208ENST00000491292 FAM161AQ3B820 660 aa12.73□□□□□ -0.37
ERCC3-208ENST00000491292 KNSTRNQ9Y448 316 aa12.72□□□□□ -0.37
ERCC3-208ENST00000491292 TNNT2P45379 298 aaPredicted RBP12.72□□□□□ -0.37
ERCC3-208ENST00000491292 ROCK2O75116 1388 aaKnown RBP12.71□□□□□ -0.37
ERCC3-208ENST00000491292 NUP155O75694 1391 aa12.71□□□□□ -0.37
ERCC3-208ENST00000491292 PANK3Q9H999 370 aa12.71□□□□□ -0.37
ERCC3-208ENST00000491292 PDE3BQ13370 1112 aa12.71□□□□□ -0.38
ERCC3-208ENST00000491292 HSP90AA1P07900 732 aaKnown RBP12.7□□□□□ -0.38
ERCC3-208ENST00000491292 SENP3Q9H4L4 574 aaPredicted RBP12.7□□□□□ -0.38
ERCC3-208ENST00000491292 FYCO1Q9BQS8 1478 aa12.7□□□□□ -0.38
ERCC3-208ENST00000491292 ERCC6Q03468 1493 aa12.7□□□□□ -0.38
ERCC3-208ENST00000491292 NESP48681 1621 aa12.7□□□□□ -0.38
ERCC3-208ENST00000491292 PTPN23Q9H3S7 1636 aa12.69□□□□□ -0.38
ERCC3-208ENST00000491292 VSIG10Q8N0Z9 540 aa12.69□□□□□ -0.38
ERCC3-208ENST00000491292 POGKQ9P215 609 aa12.68□□□□□ -0.38
ERCC3-208ENST00000491292 HMGXB3Q12766 1538 aa12.68□□□□□ -0.38
ERCC3-208ENST00000491292 CENPQQ7L2Z9 268 aaPredicted RBP12.68□□□□□ -0.38
ERCC3-208ENST00000491292 CLUAP1Q96AJ1 413 aa12.67□□□□□ -0.38
ERCC3-208ENST00000491292 PNNQ9H307 717 aaKnown RBP12.67□□□□□ -0.38
ERCC3-208ENST00000491292 ADAMTS8Q9UP79 889 aa12.67□□□□□ -0.38
ERCC3-208ENST00000491292 RSPH6AQ9H0K4 717 aa12.66□□□□□ -0.38
ERCC3-208ENST00000491292 BIVM-ERCC5R4GMW8 1640 aa12.66□□□□□ -0.38
ERCC3-208ENST00000491292 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.66□□□□□ -0.38
ERCC3-208ENST00000491292 MAP3K1Q13233 1512 aa12.66□□□□□ -0.38
ERCC3-208ENST00000491292 GOLGA2Q08379 1002 aa12.66□□□□□ -0.38
ERCC3-208ENST00000491292 FANCD2Q9BXW9 1451 aa12.66□□□□□ -0.38
ERCC3-208ENST00000491292 PDS5BQ9NTI5 1447 aa12.66□□□□□ -0.38
ERCC3-208ENST00000491292 PEG3Q9GZU2 1588 aa12.65□□□□□ -0.38
ERCC3-208ENST00000491292 BCL2L13Q9BXK5 485 aa12.65□□□□□ -0.38
ERCC3-208ENST00000491292 COG6Q9Y2V7 657 aa12.65□□□□□ -0.38
ERCC3-208ENST00000491292 NBPF1Q3BBV0 1214 aa12.65□□□□□ -0.39
ERCC3-208ENST00000491292 TRIM44Q96DX7 344 aaPredicted RBP12.65□□□□□ -0.39
ERCC3-208ENST00000491292 ANKRD30BQ9BXX2 1392 aa12.65□□□□□ -0.39
ERCC3-208ENST00000491292 ARID3AQ99856 593 aa12.64□□□□□ -0.39
ERCC3-208ENST00000491292 TMF1P82094 1093 aa12.63□□□□□ -0.39
ERCC3-208ENST00000491292 BRD4O60885 1362 aaPredicted RBP12.63□□□□□ -0.39
ERCC3-208ENST00000491292 L1TD1Q5T7N2 865 aaKnown RBP12.63□□□□□ -0.39
ERCC3-208ENST00000491292 APAF1O14727 1248 aa12.62□□□□□ -0.39
ERCC3-208ENST00000491292 GOLGA6L3A6NEY3 463 aa12.61□□□□□ -0.39
ERCC3-208ENST00000491292 BCAR3O75815 825 aa12.61□□□□□ -0.39
ERCC3-208ENST00000491292 RRP7AQ9Y3A4 280 aaKnown RBP12.61□□□□□ -0.39
ERCC3-208ENST00000491292 HNRNPMP52272 730 aaKnown RBP eCLIP12.61□□□□□ -0.399e-7■■■■■ 28.6
ERCC3-208ENST00000491292 FOXD4L1Q9NU39 408 aa12.61□□□□□ -0.39
ERCC3-208ENST00000491292 MFAP1P55081 439 aaKnown RBP12.6□□□□□ -0.39
ERCC3-208ENST00000491292 RNF123Q5XPI4 1314 aa12.6□□□□□ -0.39
ERCC3-208ENST00000491292 WASHC2CQ9Y4E1 1318 aa12.6□□□□□ -0.39
ERCC3-208ENST00000491292 PLEKHD1A6NEE1 506 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms