RNA–Protein interactions for RNA: ENST00000487252.1

TRIM56-204, Transcript of tripartite motif containing 56, humanhuman

TSL 3

Gene TRIM56, Length 735 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-204ENST00000487252 CEBPAP49715 358 aaPredicted RBP20.66■□□□□ 0.9
TRIM56-204ENST00000487252 HECW1Q76N89 1606 aa20.65■□□□□ 0.9
TRIM56-204ENST00000487252 RAPGEF6Q8TEU7 1601 aa20.6■□□□□ 0.89
TRIM56-204ENST00000487252 ATP10AO60312 1499 aa20.6■□□□□ 0.89
TRIM56-204ENST00000487252 MED1Q15648 1581 aaPredicted RBP20.59■□□□□ 0.89
TRIM56-204ENST00000487252 NCOA1Q15788 1441 aa20.57■□□□□ 0.88
TRIM56-204ENST00000487252 C9orf84Q5VXU9 1444 aa20.57■□□□□ 0.88
TRIM56-204ENST00000487252 FAM9AQ8IZU1 332 aaPredicted RBP20.57■□□□□ 0.88
TRIM56-204ENST00000487252 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.57■□□□□ 0.881e-7■■■□□ 15.5
TRIM56-204ENST00000487252 NUP153P49790 1475 aaKnown RBP20.56■□□□□ 0.88
TRIM56-204ENST00000487252 UBAP1LF5GYI3 381 aa20.53■□□□□ 0.88
TRIM56-204ENST00000487252 C3P01024 1663 aa20.51■□□□□ 0.87
TRIM56-204ENST00000487252 SAMD9Q5K651 1589 aa20.51■□□□□ 0.87
TRIM56-204ENST00000487252 PRXQ9BXM0 1461 aa20.5■□□□□ 0.87
TRIM56-204ENST00000487252 P3H3Q8IVL6 736 aa20.5■□□□□ 0.87
TRIM56-204ENST00000487252 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.49■□□□□ 0.87
TRIM56-204ENST00000487252 HNRNPUL2Q1KMD3 747 aaKnown RBP20.49■□□□□ 0.87
TRIM56-204ENST00000487252 SCAPERQ9BY12 1400 aa20.49■□□□□ 0.87
TRIM56-204ENST00000487252 TRAPPC8Q9Y2L5 1435 aa20.47■□□□□ 0.87
TRIM56-204ENST00000487252 PLEKHD1A6NEE1 506 aa20.45■□□□□ 0.86
TRIM56-204ENST00000487252 ZNF335Q9H4Z2 1342 aaPredicted RBP20.45■□□□□ 0.86
TRIM56-204ENST00000487252 REREQ9P2R6 1566 aa20.43■□□□□ 0.86
TRIM56-204ENST00000487252 HSPA1LP34931 641 aa20.42■□□□□ 0.86
TRIM56-204ENST00000487252 PLCH2O75038 1416 aa20.42■□□□□ 0.86
TRIM56-204ENST00000487252 CAMSAP1Q5T5Y3 1602 aa20.42■□□□□ 0.86
TRIM56-204ENST00000487252 KDM5CP41229 1560 aa20.38■□□□□ 0.85
TRIM56-204ENST00000487252 AGLP35573 1532 aa20.37■□□□□ 0.85
TRIM56-204ENST00000487252 DIP2CQ9Y2E4 1556 aa20.36■□□□□ 0.85
TRIM56-204ENST00000487252 ZNF518AQ6AHZ1 1483 aa20.35■□□□□ 0.85
TRIM56-204ENST00000487252 NPATQ14207 1427 aa20.33■□□□□ 0.84
TRIM56-204ENST00000487252 NCKAP5LQ9HCH0 1330 aa20.32■□□□□ 0.84
TRIM56-204ENST00000487252 PLA2R1Q13018 1463 aa20.32■□□□□ 0.84
TRIM56-204ENST00000487252 TCOF1Q13428 1488 aaKnown RBP20.31■□□□□ 0.84
TRIM56-204ENST00000487252 CNTLNQ9NXG0 1405 aa20.3■□□□□ 0.84
TRIM56-204ENST00000487252 PKD2Q13563 968 aa20.29■□□□□ 0.84
TRIM56-204ENST00000487252 PHF23Q9BUL5 403 aaPredicted RBP20.29■□□□□ 0.84
TRIM56-204ENST00000487252 ABCA6Q8N139 1617 aa20.28■□□□□ 0.84
TRIM56-204ENST00000487252 ZNF142P52746 1687 aaPredicted RBP20.27■□□□□ 0.84
TRIM56-204ENST00000487252 EFCAB2Q5VUJ9 269 aa20.27■□□□□ 0.84
TRIM56-204ENST00000487252 MYO5CQ9NQX4 1742 aa20.27■□□□□ 0.83
TRIM56-204ENST00000487252 MROH2AA6NES4 1674 aa20.26■□□□□ 0.83
TRIM56-204ENST00000487252 AFAP1Q8N556 730 aa20.26■□□□□ 0.83
TRIM56-204ENST00000487252 MLH3Q9UHC1 1453 aa20.25■□□□□ 0.83
TRIM56-204ENST00000487252 TOM1O60784 492 aa20.25■□□□□ 0.83
TRIM56-204ENST00000487252 PIP4K2BP78356 416 aa20.23■□□□□ 0.83
TRIM56-204ENST00000487252 ESF1Q9H501 851 aaKnown RBP20.23■□□□□ 0.83
TRIM56-204ENST00000487252 ALKQ9UM73 1620 aa20.22■□□□□ 0.83
TRIM56-204ENST00000487252 SCAF1Q9H7N4 1312 aaKnown RBP20.21■□□□□ 0.83
TRIM56-204ENST00000487252 CPS1P31327 1500 aa20.2■□□□□ 0.82
TRIM56-204ENST00000487252 CDK13Q14004 1512 aaKnown RBP20.2■□□□□ 0.82
TRIM56-204ENST00000487252 MYO3AQ8NEV4 1616 aa20.2■□□□□ 0.82
TRIM56-204ENST00000487252 RGS17Q9UGC6 210 aaPredicted RBP20.19■□□□□ 0.82
TRIM56-204ENST00000487252 CEP170BQ9Y4F5 1589 aaPredicted RBP20.18■□□□□ 0.82
TRIM56-204ENST00000487252 PPP6R1Q9UPN7 881 aa20.18■□□□□ 0.82
TRIM56-204ENST00000487252 ZMYM3Q14202 1370 aa20.18■□□□□ 0.82
TRIM56-204ENST00000487252 SUPT6HQ7KZ85 1726 aaKnown RBP20.17■□□□□ 0.82
TRIM56-204ENST00000487252 PTPRKQ15262 1439 aa20.13■□□□□ 0.81
TRIM56-204ENST00000487252 SHANK2Q9UPX8 1470 aa20.12■□□□□ 0.81
TRIM56-204ENST00000487252 KIDINS220Q9ULH0 1771 aa20.12■□□□□ 0.81
TRIM56-204ENST00000487252 ARHGAP5Q13017 1502 aa20.12■□□□□ 0.81
TRIM56-204ENST00000487252 KIF14Q15058 1648 aa20.11■□□□□ 0.81
TRIM56-204ENST00000487252 MYT1LQ9UL68 1186 aa20.1■□□□□ 0.81
TRIM56-204ENST00000487252 NEURL4Q96JN8 1562 aa20.08■□□□□ 0.81
TRIM56-204ENST00000487252 CDC42BPBQ9Y5S2 1711 aa20.07■□□□□ 0.8
TRIM56-204ENST00000487252 ABCC1P33527 1531 aa20.06■□□□□ 0.8
TRIM56-204ENST00000487252 DNMT1P26358 1616 aaKnown RBP20.05■□□□□ 0.8
TRIM56-204ENST00000487252 POLR1AO95602 1720 aaPredicted RBP20.05■□□□□ 0.8
TRIM56-204ENST00000487252 VWDEQ8N2E2 1590 aa20.05■□□□□ 0.8
TRIM56-204ENST00000487252 CLTCQ00610 1675 aaKnown RBP20.04■□□□□ 0.8
TRIM56-204ENST00000487252 ITSN2Q9NZM3 1697 aa20.04■□□□□ 0.8
TRIM56-204ENST00000487252 A2ML1A8K2U0 1454 aa20.03■□□□□ 0.8
TRIM56-204ENST00000487252 TROQ12816 1431 aaPredicted RBP20.01■□□□□ 0.79
TRIM56-204ENST00000487252 RANGAP1P46060 587 aaPredicted RBP19.99■□□□□ 0.79
TRIM56-204ENST00000487252 POTEAQ6S8J7 498 aa19.98■□□□□ 0.79
TRIM56-204ENST00000487252 CSRNP3Q8WYN3 585 aa19.98■□□□□ 0.79
TRIM56-204ENST00000487252 PREX2Q70Z35 1606 aa19.98■□□□□ 0.79
TRIM56-204ENST00000487252 CDK11AQ9UQ88 783 aaPredicted RBP19.97■□□□□ 0.79
TRIM56-204ENST00000487252 PLXNC1O60486 1568 aa19.96■□□□□ 0.79
TRIM56-204ENST00000487252 SAMD9LQ8IVG5 1584 aa19.95■□□□□ 0.78
TRIM56-204ENST00000487252 RNF17Q9BXT8 1623 aaKnown RBP19.94■□□□□ 0.78
TRIM56-204ENST00000487252 MED14O60244 1454 aa19.92■□□□□ 0.78
TRIM56-204ENST00000487252 LRRC7Q96NW7 1537 aa19.92■□□□□ 0.78
TRIM56-204ENST00000487252 STRCP1A6NGW2 1772 aa19.91■□□□□ 0.78
TRIM56-204ENST00000487252 CLIP1P30622 1438 aa19.91■□□□□ 0.78
TRIM56-204ENST00000487252 SETD1AO15047 1707 aaKnown RBP19.89■□□□□ 0.77
TRIM56-204ENST00000487252 DEPDC5O75140 1603 aa19.89■□□□□ 0.77
TRIM56-204ENST00000487252 SYNMO15061 1565 aa19.87■□□□□ 0.77
TRIM56-204ENST00000487252 SENP3Q9H4L4 574 aaPredicted RBP19.87■□□□□ 0.77
TRIM56-204ENST00000487252 FMN1Q68DA7 1419 aa19.86■□□□□ 0.77
TRIM56-204ENST00000487252 SRCAPQ6ZRS2 3230 aa19.85■□□□□ 0.77
TRIM56-204ENST00000487252 LRRIQ1Q96JM4 1722 aa19.85■□□□□ 0.77
TRIM56-204ENST00000487252 ANKLE2Q86XL3 938 aa19.85■□□□□ 0.77
TRIM56-204ENST00000487252 A2MP01023 1474 aa19.85■□□□□ 0.77
TRIM56-204ENST00000487252 NPHP4O75161 1426 aaPredicted RBP19.85■□□□□ 0.77
TRIM56-204ENST00000487252 CDC42BPAQ5VT25 1732 aa19.84■□□□□ 0.77
TRIM56-204ENST00000487252 INO80Q9ULG1 1556 aaPredicted RBP19.83■□□□□ 0.77
TRIM56-204ENST00000487252 ATP7AQ04656 1500 aa19.83■□□□□ 0.77
TRIM56-204ENST00000487252 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.82■□□□□ 0.76
TRIM56-204ENST00000487252 IQGAP1P46940 1657 aa19.81■□□□□ 0.76
TRIM56-204ENST00000487252 SPAG9O60271 1321 aaKnown RBP19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms