RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 CDC42BPAQ5VT25 1732 aa29.56■■■□□ 2.32
HPS3-206ENST00000486530 ABCC5O15440 1437 aa29.56■■■□□ 2.32
HPS3-206ENST00000486530 CHIC2Q9UKJ5 165 aa29.55■■■□□ 2.32
HPS3-206ENST00000486530 ABCC10Q5T3U5 1492 aa29.54■■■□□ 2.32
HPS3-206ENST00000486530 RRP7BPQ9NSQ0 103 aa29.54■■■□□ 2.32
HPS3-206ENST00000486530 CROCC2H7BZ55 1655 aa29.51■■■□□ 2.32
HPS3-206ENST00000486530 ADGBQ8N7X0 1667 aa29.51■■■□□ 2.32
HPS3-206ENST00000486530 SIN3AQ96ST3 1273 aa29.51■■■□□ 2.31
HPS3-206ENST00000486530 KDM6BO15054 1643 aa29.51■■■□□ 2.31
HPS3-206ENST00000486530 CFDP1Q9UEE9 299 aaPredicted RBP29.51■■■□□ 2.31
HPS3-206ENST00000486530 ZNF644Q9H582 1327 aaPredicted RBP29.5■■■□□ 2.31
HPS3-206ENST00000486530 ACIN1Q9UKV3 1341 aaKnown RBP29.48■■■□□ 2.31
HPS3-206ENST00000486530 NEUROD1Q13562 356 aa29.46■■■□□ 2.31
HPS3-206ENST00000486530 KDM5BQ9UGL1 1544 aa29.46■■■□□ 2.31
HPS3-206ENST00000486530 ZCCHC11Q5TAX3 1644 aaKnown RBP29.4■■■□□ 2.3
HPS3-206ENST00000486530 ADGRL2O95490 1459 aa29.4■■■□□ 2.3
HPS3-206ENST00000486530 ZNF777Q9ULD5 760 aaPredicted RBP29.36■■■□□ 2.29
HPS3-206ENST00000486530 PREX2Q70Z35 1606 aa29.36■■■□□ 2.29
HPS3-206ENST00000486530 DENND4BO75064 1496 aaPredicted RBP29.35■■■□□ 2.29
HPS3-206ENST00000486530 SHANK2Q9UPX8 1470 aa29.34■■■□□ 2.29
HPS3-206ENST00000486530 TONSLQ96HA7 1378 aa29.34■■■□□ 2.29
HPS3-206ENST00000486530 TRIM52Q96A61 297 aa29.34■■■□□ 2.29
HPS3-206ENST00000486530 NCOA1Q15788 1441 aa29.32■■■□□ 2.28
HPS3-206ENST00000486530 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.31■■■□□ 2.28
HPS3-206ENST00000486530 CDC42BPBQ9Y5S2 1711 aa29.31■■■□□ 2.28
HPS3-206ENST00000486530 ARHGEF5Q12774 1597 aa29.3■■■□□ 2.28
HPS3-206ENST00000486530 PPP1R15AO75807 674 aaPredicted RBP29.29■■■□□ 2.28
HPS3-206ENST00000486530 KCNH8Q96L42 1107 aa29.29■■■□□ 2.28
HPS3-206ENST00000486530 TTC37Q6PGP7 1564 aa29.27■■■□□ 2.28
HPS3-206ENST00000486530 ANKRD30AQ9BXX3 1397 aa29.26■■■□□ 2.28
HPS3-206ENST00000486530 MPHOSPH9Q99550 1183 aa29.26■■■□□ 2.27
HPS3-206ENST00000486530 SAMD9LQ8IVG5 1584 aa29.24■■■□□ 2.27
HPS3-206ENST00000486530 MYO5CQ9NQX4 1742 aa29.23■■■□□ 2.27
HPS3-206ENST00000486530 C9orf84Q5VXU9 1444 aa29.21■■■□□ 2.27
HPS3-206ENST00000486530 MIER1Q8N108 512 aa29.21■■■□□ 2.27
HPS3-206ENST00000486530 MBD5Q9P267 1494 aa29.17■■■□□ 2.26
HPS3-206ENST00000486530 HNRNPMP52272 730 aaKnown RBP eCLIP29.17■■■□□ 2.26
HPS3-206ENST00000486530 WDR7Q9Y4E6 1490 aa29.16■■■□□ 2.26
HPS3-206ENST00000486530 CCDC141Q6ZP82 1450 aa29.15■■■□□ 2.26
HPS3-206ENST00000486530 PLCH2O75038 1416 aa29.15■■■□□ 2.26
HPS3-206ENST00000486530 ARHGAP5Q13017 1502 aa29.14■■■□□ 2.26
HPS3-206ENST00000486530 ANKRD50Q9ULJ7 1429 aa29.14■■■□□ 2.25
HPS3-206ENST00000486530 PZPP20742 1482 aa29.14■■■□□ 2.25
HPS3-206ENST00000486530 TSPY4P0CV99 314 aa29.11■■■□□ 2.25
HPS3-206ENST00000486530 TSPY10P0CW01 314 aa29.11■■■□□ 2.25
HPS3-206ENST00000486530 ANKRD30BQ9BXX2 1392 aa29.11■■■□□ 2.25
HPS3-206ENST00000486530 RSPH4AQ5TD94 716 aa29.1■■■□□ 2.25
HPS3-206ENST00000486530 ASXL2Q76L83 1435 aa29.1■■■□□ 2.25
HPS3-206ENST00000486530 PLEKHH2Q8IVE3 1493 aa29.08■■■□□ 2.25
HPS3-206ENST00000486530 CYB5RLQ6IPT4 315 aa29.08■■■□□ 2.25
HPS3-206ENST00000486530 SLC4A1APQ9BWU0 796 aaKnown RBP29.08■■■□□ 2.25
HPS3-206ENST00000486530 MAST1Q9Y2H9 1570 aa29.08■■■□□ 2.25
HPS3-206ENST00000486530 SYCP2Q9BX26 1530 aa29.08■■■□□ 2.25
HPS3-206ENST00000486530 NPM1P06748 294 aaKnown RBP eCLIP29.08■■■□□ 2.25
HPS3-206ENST00000486530 RPRD2Q5VT52 1461 aaKnown RBP29.07■■■□□ 2.24
HPS3-206ENST00000486530 KIAA1107Q9UPP5 1409 aa29.07■■■□□ 2.24
HPS3-206ENST00000486530 EFCAB2Q5VUJ9 269 aa29.06■■■□□ 2.24
HPS3-206ENST00000486530 CENPBP07199 599 aaPredicted RBP29.05■■■□□ 2.24
HPS3-206ENST00000486530 KDM5DQ9BY66 1539 aa29.05■■■□□ 2.24
HPS3-206ENST00000486530 KIF15Q9NS87 1388 aa29.03■■■□□ 2.24
HPS3-206ENST00000486530 FOXD1Q16676 465 aa29.02■■■□□ 2.24
HPS3-206ENST00000486530 ARAP3Q8WWN8 1544 aa29.01■■■□□ 2.23
HPS3-206ENST00000486530 RIMBP3CA6NJZ7 1639 aa28.99■■■□□ 2.23
HPS3-206ENST00000486530 RIMBP3BA6NNM3 1639 aa28.99■■■□□ 2.23
HPS3-206ENST00000486530 RIMBP3Q9UFD9 1639 aa28.99■■■□□ 2.23
HPS3-206ENST00000486530 ARHGEF12Q9NZN5 1544 aa28.99■■■□□ 2.23
HPS3-206ENST00000486530 ABCA9Q8IUA7 1624 aa28.99■■■□□ 2.23
HPS3-206ENST00000486530 PLXNC1O60486 1568 aa28.98■■■□□ 2.23
HPS3-206ENST00000486530 TEX14Q8IWB6 1497 aa28.97■■■□□ 2.23
HPS3-206ENST00000486530 ABCC1P33527 1531 aa28.92■■■□□ 2.22
HPS3-206ENST00000486530 L3MBTL2Q969R5 705 aa28.91■■■□□ 2.22
HPS3-206ENST00000486530 NUP155O75694 1391 aa28.9■■■□□ 2.22
HPS3-206ENST00000486530 PKD2Q13563 968 aa28.87■■■□□ 2.21
HPS3-206ENST00000486530 UNC13BO14795 1591 aa28.87■■■□□ 2.21
HPS3-206ENST00000486530 TRAPPC8Q9Y2L5 1435 aa28.87■■■□□ 2.21
HPS3-206ENST00000486530 FANCAO15360 1455 aa28.86■■■□□ 2.21
HPS3-206ENST00000486530 YTHDC1Q96MU7 727 aaKnown RBP28.83■■■□□ 2.2
HPS3-206ENST00000486530 DUOX2Q9NRD8 1548 aa28.82■■■□□ 2.2
HPS3-206ENST00000486530 HIRIP3Q9BW71 556 aaPredicted RBP28.82■■■□□ 2.2
HPS3-206ENST00000486530 FAM135AQ9P2D6 1515 aa28.81■■■□□ 2.2
HPS3-206ENST00000486530 DDX10Q13206 875 aaKnown RBP28.8■■■□□ 2.2
HPS3-206ENST00000486530 AFAP1Q8N556 730 aa28.78■■■□□ 2.2
HPS3-206ENST00000486530 CD109Q6YHK3 1445 aa28.77■■■□□ 2.2
HPS3-206ENST00000486530 ERBINQ96RT1 1412 aa28.77■■■□□ 2.2
HPS3-206ENST00000486530 IQGAP3Q86VI3 1631 aa28.75■■■□□ 2.19
HPS3-206ENST00000486530 SCAF1Q9H7N4 1312 aaKnown RBP28.75■■■□□ 2.19
HPS3-206ENST00000486530 RTEL1-TNFRSF6BF6WH68 1400 aa28.74■■■□□ 2.19
HPS3-206ENST00000486530 SCAPERQ9BY12 1400 aa28.74■■■□□ 2.19
HPS3-206ENST00000486530 SPAG9O60271 1321 aaKnown RBP28.73■■■□□ 2.19
HPS3-206ENST00000486530 ADGRL1O94910 1474 aa28.73■■■□□ 2.19
HPS3-206ENST00000486530 EIF4G2P78344 907 aaKnown RBP eCLIP28.72■■■□□ 2.19
HPS3-206ENST00000486530 MAGI2Q86UL8 1455 aa28.72■■■□□ 2.19
HPS3-206ENST00000486530 HSPA5P11021 654 aaKnown RBP28.71■■■□□ 2.19
HPS3-206ENST00000486530 NBPF8Q3BBV2 869 aa28.7■■■□□ 2.18
HPS3-206ENST00000486530 ZFYVE16Q7Z3T8 1539 aa28.69■■■□□ 2.18
HPS3-206ENST00000486530 POLR1AO95602 1720 aaPredicted RBP28.64■■■□□ 2.18
HPS3-206ENST00000486530 INO80Q9ULG1 1556 aaPredicted RBP28.64■■■□□ 2.17
HPS3-206ENST00000486530 UHRF1BP1Q6BDS2 1440 aa28.62■■■□□ 2.17
HPS3-206ENST00000486530 CFAP74Q9C0B2 1584 aa28.62■■■□□ 2.17
HPS3-206ENST00000486530 GLI2P10070 1586 aa28.59■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms