RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PRXQ9BXM0 1461 aa14.53□□□□□ -0.08
HDAC6-228ENST00000486227 PHLDB1Q86UU1 1377 aa14.53□□□□□ -0.08
HDAC6-228ENST00000486227 CYB5RLQ6IPT4 315 aa14.53□□□□□ -0.08
HDAC6-228ENST00000486227 TOP2BQ02880 1626 aa14.52□□□□□ -0.08
HDAC6-228ENST00000486227 CCER2I3L3R5 266 aa14.52□□□□□ -0.08
HDAC6-228ENST00000486227 RSPH4AQ5TD94 716 aa14.52□□□□□ -0.08
HDAC6-228ENST00000486227 KIF3BO15066 747 aa14.52□□□□□ -0.09
HDAC6-228ENST00000486227 TNNT2P45379 298 aaPredicted RBP14.51□□□□□ -0.09
HDAC6-228ENST00000486227 PPP4R2Q9NY27 417 aa14.51□□□□□ -0.09
HDAC6-228ENST00000486227 ERICH3Q5RHP9 1530 aa14.51□□□□□ -0.09
HDAC6-228ENST00000486227 CFAP53Q96M91 514 aa14.51□□□□□ -0.09
HDAC6-228ENST00000486227 PPM1GO15355 546 aaPredicted RBP14.5□□□□□ -0.09
HDAC6-228ENST00000486227 SPAG9O60271 1321 aaKnown RBP14.5□□□□□ -0.09
HDAC6-228ENST00000486227 LMOD2Q6P5Q4 547 aa14.5□□□□□ -0.09
HDAC6-228ENST00000486227 DNAJC5BQ9UF47 199 aa14.5□□□□□ -0.09
HDAC6-228ENST00000486227 NEUROD2Q15784 382 aa14.49□□□□□ -0.09
HDAC6-228ENST00000486227 ZNF644Q9H582 1327 aaPredicted RBP14.49□□□□□ -0.09
HDAC6-228ENST00000486227 TOPBP1Q92547 1522 aa14.49□□□□□ -0.09
HDAC6-228ENST00000486227 LRRC9Q6ZRR7 1453 aa14.48□□□□□ -0.09
HDAC6-228ENST00000486227 POLA1P09884 1462 aaPredicted RBP14.48□□□□□ -0.09
HDAC6-228ENST00000486227 NOP58Q9Y2X3 529 aaKnown RBP14.47□□□□□ -0.09
HDAC6-228ENST00000486227 FGD6Q6ZV73 1430 aa14.47□□□□□ -0.09
HDAC6-228ENST00000486227 SAFB2Q14151 953 aaKnown RBP eCLIP14.47□□□□□ -0.09
HDAC6-228ENST00000486227 ROCK2O75116 1388 aaKnown RBP14.47□□□□□ -0.09
HDAC6-228ENST00000486227 GLIPR1L2Q4G1C9 344 aa14.46□□□□□ -0.09
HDAC6-228ENST00000486227 DEKP35659 375 aaKnown RBP14.45□□□□□ -0.1
HDAC6-228ENST00000486227 GRIN2BQ13224 1484 aa14.45□□□□□ -0.1
HDAC6-228ENST00000486227 CASKIN1Q8WXD9 1431 aa14.45□□□□□ -0.1
HDAC6-228ENST00000486227 MYOM3Q5VTT5 1437 aa14.44□□□□□ -0.1
HDAC6-228ENST00000486227 STK26Q9P289 416 aa14.42□□□□□ -0.1
HDAC6-228ENST00000486227 UPF2Q9HAU5 1272 aaKnown RBP14.41□□□□□ -0.1
HDAC6-228ENST00000486227 ERICH6BQ5W0A0 696 aa14.41□□□□□ -0.1
HDAC6-228ENST00000486227 SRPK2P78362 688 aaKnown RBP14.4□□□□□ -0.1
HDAC6-228ENST00000486227 MRC2Q9UBG0 1479 aa14.39□□□□□ -0.11
HDAC6-228ENST00000486227 NUDCQ9Y266 331 aa14.39□□□□□ -0.11
HDAC6-228ENST00000486227 NCOA2Q15596 1464 aa14.38□□□□□ -0.11
HDAC6-228ENST00000486227 U2SURPO15042 1029 aaKnown RBP14.38□□□□□ -0.11
HDAC6-228ENST00000486227 DDRGK1Q96HY6 314 aa14.38□□□□□ -0.11
HDAC6-228ENST00000486227 KTN1Q86UP2 1357 aaKnown RBP14.36□□□□□ -0.11
HDAC6-228ENST00000486227 MAPK8IP3Q9UPT6 1336 aa14.36□□□□□ -0.11
HDAC6-228ENST00000486227 WASHC2CQ9Y4E1 1318 aa14.36□□□□□ -0.11
HDAC6-228ENST00000486227 ST20-MTHFSA0A0A6YYL1 179 aa14.36□□□□□ -0.11
HDAC6-228ENST00000486227 MORC1Q86VD1 984 aa14.36□□□□□ -0.11
HDAC6-228ENST00000486227 FYCO1Q9BQS8 1478 aa14.35□□□□□ -0.11
HDAC6-228ENST00000486227 RRBP1Q9P2E9 1410 aaKnown RBP14.35□□□□□ -0.11
HDAC6-228ENST00000486227 B4GALNT3Q6L9W6 998 aa14.35□□□□□ -0.11
HDAC6-228ENST00000486227 DNMBPQ6XZF7 1577 aa14.35□□□□□ -0.11
HDAC6-228ENST00000486227 PEG3Q9GZU2 1588 aa14.35□□□□□ -0.11
HDAC6-228ENST00000486227 NUTM2DQ5VT03 806 aaPredicted RBP14.34□□□□□ -0.11
HDAC6-228ENST00000486227 CCDC144AA2RUR9 1427 aa14.34□□□□□ -0.11
HDAC6-228ENST00000486227 HSP90AA1P07900 732 aaKnown RBP14.34□□□□□ -0.11
HDAC6-228ENST00000486227 LAS1LQ9Y4W2 734 aaKnown RBP14.34□□□□□ -0.11
HDAC6-228ENST00000486227 IFT140Q96RY7 1462 aa14.33□□□□□ -0.12
HDAC6-228ENST00000486227 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
HDAC6-228ENST00000486227 RALBP1Q15311 655 aa14.32□□□□□ -0.12
HDAC6-228ENST00000486227 UACAQ9BZF9 1416 aa14.32□□□□□ -0.12
HDAC6-228ENST00000486227 FRAT1Q92837 279 aaPredicted RBP14.32□□□□□ -0.12
HDAC6-228ENST00000486227 PRDM2Q13029 1718 aa14.32□□□□□ -0.12
HDAC6-228ENST00000486227 EID1Q9Y6B2 187 aa14.31□□□□□ -0.12
HDAC6-228ENST00000486227 MYH16Q9H6N6 1097 aa14.3□□□□□ -0.12
HDAC6-228ENST00000486227 KIF15Q9NS87 1388 aa14.3□□□□□ -0.12
HDAC6-228ENST00000486227 EFCAB5A4FU69 1503 aa14.3□□□□□ -0.12
HDAC6-228ENST00000486227 ABCA10Q8WWZ4 1543 aa14.3□□□□□ -0.12
HDAC6-228ENST00000486227 SOX12O15370 315 aa14.29□□□□□ -0.12
HDAC6-228ENST00000486227 ARXQ96QS3 562 aa14.29□□□□□ -0.12
HDAC6-228ENST00000486227 FTSJ3Q8IY81 847 aaKnown RBP14.29□□□□□ -0.12
HDAC6-228ENST00000486227 PRG4Q92954 1404 aaPredicted RBP14.28□□□□□ -0.12
HDAC6-228ENST00000486227 SNAPC4Q5SXM2 1469 aa14.28□□□□□ -0.12
HDAC6-228ENST00000486227 FAM69CQ0P6D2 419 aa14.27□□□□□ -0.12
HDAC6-228ENST00000486227 RTN4Q9NQC3 1192 aaKnown RBP14.27□□□□□ -0.12
HDAC6-228ENST00000486227 TRAK1Q9UPV9 953 aa14.27□□□□□ -0.13
HDAC6-228ENST00000486227 FANCIQ9NVI1 1328 aa14.26□□□□□ -0.13
HDAC6-228ENST00000486227 USP47Q96K76 1375 aa14.26□□□□□ -0.13
HDAC6-228ENST00000486227 ANKRD50Q9ULJ7 1429 aa14.26□□□□□ -0.13
HDAC6-228ENST00000486227 NLRP13Q86W25 1043 aa14.25□□□□□ -0.13
HDAC6-228ENST00000486227 PRKRIP1Q9H875 184 aaPredicted RBP14.25□□□□□ -0.13
HDAC6-228ENST00000486227 EIF3AQ14152 1382 aaKnown RBP14.25□□□□□ -0.13
HDAC6-228ENST00000486227 HDGFL2Q7Z4V5 671 aaPredicted RBP14.24□□□□□ -0.13
HDAC6-228ENST00000486227 TIAM1Q13009 1591 aa14.24□□□□□ -0.13
HDAC6-228ENST00000486227 RGS3P49796 1198 aa14.24□□□□□ -0.13
HDAC6-228ENST00000486227 AFAP1Q8N556 730 aa14.23□□□□□ -0.13
HDAC6-228ENST00000486227 LAMC3Q9Y6N6 1575 aa14.23□□□□□ -0.13
HDAC6-228ENST00000486227 PANK3Q9H999 370 aa14.23□□□□□ -0.13
HDAC6-228ENST00000486227 ANP32BQ92688 251 aaKnown RBP14.23□□□□□ -0.13
HDAC6-228ENST00000486227 U2AF1L5P0DN76 240 aaPredicted RBP14.22□□□□□ -0.13
HDAC6-228ENST00000486227 U2AF1Q01081 240 aaKnown RBP eCLIP14.22□□□□□ -0.13
HDAC6-228ENST00000486227 SYNJ2O15056 1496 aa14.21□□□□□ -0.13
HDAC6-228ENST00000486227 PNNQ9H307 717 aaKnown RBP14.21□□□□□ -0.14
HDAC6-228ENST00000486227 RCAN3Q9UKA8 241 aa14.2□□□□□ -0.14
HDAC6-228ENST00000486227 TROQ12816 1431 aaPredicted RBP14.19□□□□□ -0.14
HDAC6-228ENST00000486227 PAK3O75914 559 aaPredicted RBP14.19□□□□□ -0.14
HDAC6-228ENST00000486227 KIAA0586Q9BVV6 1533 aa14.18□□□□□ -0.14
HDAC6-228ENST00000486227 URB2Q14146 1524 aaKnown RBP14.18□□□□□ -0.14
HDAC6-228ENST00000486227 EHBP1L1Q8N3D4 1523 aa14.18□□□□□ -0.14
HDAC6-228ENST00000486227 MIA2Q96PC5 1412 aa14.17□□□□□ -0.14
HDAC6-228ENST00000486227 BECN1Q14457 450 aa14.17□□□□□ -0.14
HDAC6-228ENST00000486227 CCDC146Q8IYE0 955 aa14.16□□□□□ -0.14
HDAC6-228ENST00000486227 MYBBP1AQ9BQG0 1328 aaKnown RBP14.16□□□□□ -0.14
HDAC6-228ENST00000486227 KIF7Q2M1P5 1343 aa14.16□□□□□ -0.14
HDAC6-228ENST00000486227 VGFO15240 615 aaPredicted RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms