RNA–Protein interactions for RNA: ENST00000483030.1

CSDE1-206, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-206ENST00000483030 CDK13Q14004 1512 aaKnown RBP12.27□□□□□ -0.44
CSDE1-206ENST00000483030 MAGI2Q86UL8 1455 aa12.27□□□□□ -0.45
CSDE1-206ENST00000483030 EFCAB5A4FU69 1503 aa12.27□□□□□ -0.45
CSDE1-206ENST00000483030 ZFYVE16Q7Z3T8 1539 aa12.27□□□□□ -0.45
CSDE1-206ENST00000483030 TTC37Q6PGP7 1564 aa12.26□□□□□ -0.45
CSDE1-206ENST00000483030 RIMS1Q86UR5 1692 aaKnown RBP12.26□□□□□ -0.45
CSDE1-206ENST00000483030 RICTORQ6R327 1708 aa12.26□□□□□ -0.45
CSDE1-206ENST00000483030 CDK11AQ9UQ88 783 aaPredicted RBP12.26□□□□□ -0.45
CSDE1-206ENST00000483030 ZMYM4Q5VZL5 1548 aa12.26□□□□□ -0.45
CSDE1-206ENST00000483030 CEBPAP49715 358 aaPredicted RBP12.25□□□□□ -0.45
CSDE1-206ENST00000483030 PIAS4Q8N2W9 510 aaPredicted RBP12.25□□□□□ -0.45
CSDE1-206ENST00000483030 CFAP74Q9C0B2 1584 aa12.25□□□□□ -0.45
CSDE1-206ENST00000483030 HECW1Q76N89 1606 aa12.24□□□□□ -0.45
CSDE1-206ENST00000483030 CERKQ8TCT0 537 aa12.24□□□□□ -0.45
CSDE1-206ENST00000483030 ATP10AO60312 1499 aa12.23□□□□□ -0.45
CSDE1-206ENST00000483030 AFAP1Q8N556 730 aa12.23□□□□□ -0.45
CSDE1-206ENST00000483030 MYT1LQ9UL68 1186 aa12.23□□□□□ -0.45
CSDE1-206ENST00000483030 FMN1Q68DA7 1419 aa12.22□□□□□ -0.45
CSDE1-206ENST00000483030 SIGLEC1Q9BZZ2 1709 aa12.21□□□□□ -0.45
CSDE1-206ENST00000483030 C9orf84Q5VXU9 1444 aa12.2□□□□□ -0.46
CSDE1-206ENST00000483030 ARHGAP35Q9NRY4 1499 aa12.19□□□□□ -0.46
CSDE1-206ENST00000483030 TROQ12816 1431 aaPredicted RBP12.18□□□□□ -0.46
CSDE1-206ENST00000483030 ARHGEF12Q9NZN5 1544 aa12.17□□□□□ -0.46
CSDE1-206ENST00000483030 ZNF518AQ6AHZ1 1483 aa12.16□□□□□ -0.46
CSDE1-206ENST00000483030 DMRT2Q9Y5R5 561 aa12.16□□□□□ -0.46
CSDE1-206ENST00000483030 CLIP1P30622 1438 aa12.15□□□□□ -0.46
CSDE1-206ENST00000483030 ARHGAP5Q13017 1502 aa12.15□□□□□ -0.46
CSDE1-206ENST00000483030 ESF1Q9H501 851 aaKnown RBP12.14□□□□□ -0.47
CSDE1-206ENST00000483030 KIF14Q15058 1648 aa12.14□□□□□ -0.47
CSDE1-206ENST00000483030 FER1L4A9Z1Z3 1794 aa12.13□□□□□ -0.47
CSDE1-206ENST00000483030 UHRF1BP1Q6BDS2 1440 aa12.12□□□□□ -0.47
CSDE1-206ENST00000483030 MYO5CQ9NQX4 1742 aa12.11□□□□□ -0.47
CSDE1-206ENST00000483030 TRAPPC8Q9Y2L5 1435 aa12.11□□□□□ -0.47
CSDE1-206ENST00000483030 MLH3Q9UHC1 1453 aa12.1□□□□□ -0.47
CSDE1-206ENST00000483030 KDM5CP41229 1560 aa12.09□□□□□ -0.47
CSDE1-206ENST00000483030 ZNF777Q9ULD5 760 aaPredicted RBP12.09□□□□□ -0.47
CSDE1-206ENST00000483030 DIP2CQ9Y2E4 1556 aa12.08□□□□□ -0.48
CSDE1-206ENST00000483030 PREX1Q8TCU6 1659 aa12.07□□□□□ -0.48
CSDE1-206ENST00000483030 CASKIN1Q8WXD9 1431 aa12.07□□□□□ -0.48
CSDE1-206ENST00000483030 DISP3Q9P2K9 1392 aa12.06□□□□□ -0.48
CSDE1-206ENST00000483030 HNRNPMP52272 730 aaKnown RBP eCLIP12.06□□□□□ -0.48
CSDE1-206ENST00000483030 PTPRTO14522 1441 aa12.05□□□□□ -0.48
CSDE1-206ENST00000483030 ILDR2Q71H61 639 aa12.05□□□□□ -0.48
CSDE1-206ENST00000483030 AGLP35573 1532 aa12.05□□□□□ -0.48
CSDE1-206ENST00000483030 REREQ9P2R6 1566 aa12.05□□□□□ -0.48
CSDE1-206ENST00000483030 CCDC18Q5T9S5 1454 aa12.04□□□□□ -0.48
CSDE1-206ENST00000483030 ABCC1P33527 1531 aa12.04□□□□□ -0.48
CSDE1-206ENST00000483030 STRCQ7RTU9 1775 aa12.04□□□□□ -0.48
CSDE1-206ENST00000483030 SPAG9O60271 1321 aaKnown RBP12.04□□□□□ -0.48
CSDE1-206ENST00000483030 ABCA6Q8N139 1617 aa12.04□□□□□ -0.48
CSDE1-206ENST00000483030 SETD1BQ9UPS6 1966 aaKnown RBP12.03□□□□□ -0.48
CSDE1-206ENST00000483030 ZMYM3Q14202 1370 aa12.03□□□□□ -0.48
CSDE1-206ENST00000483030 CDC42BPBQ9Y5S2 1711 aa12.03□□□□□ -0.48
CSDE1-206ENST00000483030 CNTLNQ9NXG0 1405 aa12.03□□□□□ -0.48
CSDE1-206ENST00000483030 LRRIQ1Q96JM4 1722 aa12.02□□□□□ -0.49
CSDE1-206ENST00000483030 CFDP1Q9UEE9 299 aaPredicted RBP12.01□□□□□ -0.49
CSDE1-206ENST00000483030 PREX2Q70Z35 1606 aa12□□□□□ -0.49
CSDE1-206ENST00000483030 C3P01024 1663 aa12□□□□□ -0.49
CSDE1-206ENST00000483030 NCKAP5LQ9HCH0 1330 aa12□□□□□ -0.49
CSDE1-206ENST00000483030 NCOA1Q15788 1441 aa12□□□□□ -0.49
CSDE1-206ENST00000483030 GPATCH8Q9UKJ3 1502 aaKnown RBP12□□□□□ -0.49
CSDE1-206ENST00000483030 GGT6Q6P531 493 aa11.99□□□□□ -0.49
CSDE1-206ENST00000483030 KIDINS220Q9ULH0 1771 aa11.98□□□□□ -0.49
CSDE1-206ENST00000483030 SAMD9LQ8IVG5 1584 aa11.98□□□□□ -0.49
CSDE1-206ENST00000483030 NPATQ14207 1427 aa11.98□□□□□ -0.49
CSDE1-206ENST00000483030 SOCS7O14512 581 aa11.98□□□□□ -0.49
CSDE1-206ENST00000483030 ITSN2Q9NZM3 1697 aa11.97□□□□□ -0.49
CSDE1-206ENST00000483030 LTBP4Q8N2S1 1624 aa11.97□□□□□ -0.49
CSDE1-206ENST00000483030 FYCO1Q9BQS8 1478 aa11.97□□□□□ -0.49
CSDE1-206ENST00000483030 CCNB3Q8WWL7 1395 aa11.97□□□□□ -0.49
CSDE1-206ENST00000483030 SYCP2Q9BX26 1530 aa11.96□□□□□ -0.49
CSDE1-206ENST00000483030 KIAA1107Q9UPP5 1409 aa11.96□□□□□ -0.49
CSDE1-206ENST00000483030 ZNF335Q9H4Z2 1342 aaPredicted RBP11.96□□□□□ -0.49
CSDE1-206ENST00000483030 ZNF644Q9H582 1327 aaPredicted RBP11.95□□□□□ -0.5
CSDE1-206ENST00000483030 PKD2Q13563 968 aa11.95□□□□□ -0.5
CSDE1-206ENST00000483030 CAMSAP1Q5T5Y3 1602 aa11.95□□□□□ -0.5
CSDE1-206ENST00000483030 A2MP01023 1474 aa11.95□□□□□ -0.5
CSDE1-206ENST00000483030 CDC42BPAQ5VT25 1732 aa11.94□□□□□ -0.5
CSDE1-206ENST00000483030 MTUS2Q5JR59 1369 aa11.94□□□□□ -0.5
CSDE1-206ENST00000483030 UBAP1LF5GYI3 381 aa11.94□□□□□ -0.5
CSDE1-206ENST00000483030 PPP6R1Q9UPN7 881 aa11.94□□□□□ -0.5
CSDE1-206ENST00000483030 PLEKHH2Q8IVE3 1493 aa11.93□□□□□ -0.5
CSDE1-206ENST00000483030 PTPRKQ15262 1439 aa11.93□□□□□ -0.5
CSDE1-206ENST00000483030 ATP7AQ04656 1500 aa11.92□□□□□ -0.5
CSDE1-206ENST00000483030 IQSEC2Q5JU85 1478 aa11.92□□□□□ -0.5
CSDE1-206ENST00000483030 SUPT6HQ7KZ85 1726 aaKnown RBP11.9□□□□□ -0.5
CSDE1-206ENST00000483030 KIF3BO15066 747 aa11.89□□□□□ -0.51
CSDE1-206ENST00000483030 FBXO31Q5XUX0 539 aaPredicted RBP11.89□□□□□ -0.51
CSDE1-206ENST00000483030 MROH2AA6NES4 1674 aa11.89□□□□□ -0.51
CSDE1-206ENST00000483030 PLA2R1Q13018 1463 aa11.89□□□□□ -0.51
CSDE1-206ENST00000483030 DHX29Q7Z478 1369 aaKnown RBP11.88□□□□□ -0.51
CSDE1-206ENST00000483030 TCOF1Q13428 1488 aaKnown RBP11.88□□□□□ -0.51
CSDE1-206ENST00000483030 MBD5Q9P267 1494 aa11.88□□□□□ -0.51
CSDE1-206ENST00000483030 PLXNC1O60486 1568 aa11.88□□□□□ -0.51
CSDE1-206ENST00000483030 SPATA31D1Q6ZQQ2 1576 aa11.88□□□□□ -0.51
CSDE1-206ENST00000483030 CLTCQ00610 1675 aaKnown RBP11.87□□□□□ -0.51
CSDE1-206ENST00000483030 INO80Q9ULG1 1556 aaPredicted RBP11.87□□□□□ -0.51
CSDE1-206ENST00000483030 CEP170BQ9Y4F5 1589 aaPredicted RBP11.86□□□□□ -0.51
CSDE1-206ENST00000483030 RTEL1-TNFRSF6BF6WH68 1400 aa11.86□□□□□ -0.51
CSDE1-206ENST00000483030 SCAF1Q9H7N4 1312 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms