RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 CSRNP3Q8WYN3 585 aa12.97□□□□□ -0.33
USP54-213ENST00000481991 EFCAB5A4FU69 1503 aa12.97□□□□□ -0.33
USP54-213ENST00000481991 PRXQ9BXM0 1461 aa12.97□□□□□ -0.33
USP54-213ENST00000481991 EHMT2Q96KQ7 1210 aa12.96□□□□□ -0.33
USP54-213ENST00000481991 ATP10AO60312 1499 aa12.96□□□□□ -0.34
USP54-213ENST00000481991 FER1L4A9Z1Z3 1794 aa12.95□□□□□ -0.34
USP54-213ENST00000481991 AFAP1Q8N556 730 aa12.95□□□□□ -0.34
USP54-213ENST00000481991 RICTORQ6R327 1708 aa12.95□□□□□ -0.34
USP54-213ENST00000481991 NUP153P49790 1475 aaKnown RBP12.94□□□□□ -0.34
USP54-213ENST00000481991 MAGI2Q86UL8 1455 aa12.94□□□□□ -0.34
USP54-213ENST00000481991 HECW1Q76N89 1606 aa12.93□□□□□ -0.34
USP54-213ENST00000481991 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.92□□□□□ -0.34
USP54-213ENST00000481991 NCKAP5LQ9HCH0 1330 aa12.91□□□□□ -0.34
USP54-213ENST00000481991 SIGLEC1Q9BZZ2 1709 aa12.91□□□□□ -0.34
USP54-213ENST00000481991 CFAP74Q9C0B2 1584 aa12.91□□□□□ -0.34
USP54-213ENST00000481991 C9orf84Q5VXU9 1444 aa12.91□□□□□ -0.34
USP54-213ENST00000481991 PIP4K2BP78356 416 aa12.91□□□□□ -0.34
USP54-213ENST00000481991 PREX1Q8TCU6 1659 aa12.91□□□□□ -0.34
USP54-213ENST00000481991 TTC37Q6PGP7 1564 aa12.9□□□□□ -0.34
USP54-213ENST00000481991 PTPRTO14522 1441 aa12.9□□□□□ -0.34
USP54-213ENST00000481991 STRCQ7RTU9 1775 aa12.9□□□□□ -0.34
USP54-213ENST00000481991 CDK11AQ9UQ88 783 aaPredicted RBP12.89□□□□□ -0.35
USP54-213ENST00000481991 PLCH2O75038 1416 aa12.88□□□□□ -0.35
USP54-213ENST00000481991 ZMYM4Q5VZL5 1548 aa12.88□□□□□ -0.35
USP54-213ENST00000481991 ARHGEF12Q9NZN5 1544 aa12.88□□□□□ -0.35
USP54-213ENST00000481991 ZNF335Q9H4Z2 1342 aaPredicted RBP12.88□□□□□ -0.35
USP54-213ENST00000481991 PHF23Q9BUL5 403 aaPredicted RBP12.87□□□□□ -0.35
USP54-213ENST00000481991 SENP3Q9H4L4 574 aaPredicted RBP12.87□□□□□ -0.35
USP54-213ENST00000481991 SETD1BQ9UPS6 1966 aaKnown RBP12.87□□□□□ -0.35
USP54-213ENST00000481991 SAMD9Q5K651 1589 aa12.85□□□□□ -0.35
USP54-213ENST00000481991 TRAPPC8Q9Y2L5 1435 aa12.84□□□□□ -0.35
USP54-213ENST00000481991 HSPA1LP34931 641 aa12.83□□□□□ -0.36
USP54-213ENST00000481991 CDK13Q14004 1512 aaKnown RBP12.83□□□□□ -0.36
USP54-213ENST00000481991 UBTFP17480 764 aaKnown RBP12.82□□□□□ -0.36
USP54-213ENST00000481991 LTBP4Q8N2S1 1624 aa12.81□□□□□ -0.36
USP54-213ENST00000481991 ZNF777Q9ULD5 760 aaPredicted RBP12.81□□□□□ -0.36
USP54-213ENST00000481991 TOM1O60784 492 aa12.8□□□□□ -0.36
USP54-213ENST00000481991 ZNF518AQ6AHZ1 1483 aa12.79□□□□□ -0.36
USP54-213ENST00000481991 ARHGAP5Q13017 1502 aa12.79□□□□□ -0.36
USP54-213ENST00000481991 NCOA1Q15788 1441 aa12.79□□□□□ -0.36
USP54-213ENST00000481991 PKD2Q13563 968 aa12.78□□□□□ -0.36
USP54-213ENST00000481991 PPP6R1Q9UPN7 881 aa12.78□□□□□ -0.36
USP54-213ENST00000481991 IQSEC2Q5JU85 1478 aa12.78□□□□□ -0.36
USP54-213ENST00000481991 GGT6Q6P531 493 aa12.77□□□□□ -0.37
USP54-213ENST00000481991 ZMYM3Q14202 1370 aa12.77□□□□□ -0.37
USP54-213ENST00000481991 CAMSAP1Q5T5Y3 1602 aa12.77□□□□□ -0.37
USP54-213ENST00000481991 C3P01024 1663 aa12.75□□□□□ -0.37
USP54-213ENST00000481991 CLIP1P30622 1438 aa12.73□□□□□ -0.37
USP54-213ENST00000481991 CNTLNQ9NXG0 1405 aa12.73□□□□□ -0.37
USP54-213ENST00000481991 MYO5CQ9NQX4 1742 aa12.72□□□□□ -0.37
USP54-213ENST00000481991 HNRNPMP52272 730 aaKnown RBP eCLIP12.71□□□□□ -0.37
USP54-213ENST00000481991 SPAG9O60271 1321 aaKnown RBP12.7□□□□□ -0.38
USP54-213ENST00000481991 DIP2CQ9Y2E4 1556 aa12.7□□□□□ -0.38
USP54-213ENST00000481991 MLH3Q9UHC1 1453 aa12.69□□□□□ -0.38
USP54-213ENST00000481991 TROQ12816 1431 aaPredicted RBP12.68□□□□□ -0.38
USP54-213ENST00000481991 FMN1Q68DA7 1419 aa12.68□□□□□ -0.38
USP54-213ENST00000481991 KIF14Q15058 1648 aa12.67□□□□□ -0.38
USP54-213ENST00000481991 NPATQ14207 1427 aa12.67□□□□□ -0.38
USP54-213ENST00000481991 MED1Q15648 1581 aaPredicted RBP12.67□□□□□ -0.38
USP54-213ENST00000481991 ABCA6Q8N139 1617 aa12.66□□□□□ -0.38
USP54-213ENST00000481991 KDM5CP41229 1560 aa12.66□□□□□ -0.38
USP54-213ENST00000481991 AGLP35573 1532 aa12.66□□□□□ -0.38
USP54-213ENST00000481991 ANKLE2Q86XL3 938 aa12.65□□□□□ -0.38
USP54-213ENST00000481991 EEA1Q15075 1411 aa12.64□□□□□ -0.39
USP54-213ENST00000481991 FBXO31Q5XUX0 539 aaPredicted RBP12.63□□□□□ -0.39
USP54-213ENST00000481991 REREQ9P2R6 1566 aa12.62□□□□□ -0.39
USP54-213ENST00000481991 SUPT6HQ7KZ85 1726 aaKnown RBP12.62□□□□□ -0.39
USP54-213ENST00000481991 CFDP1Q9UEE9 299 aaPredicted RBP12.61□□□□□ -0.39
USP54-213ENST00000481991 THEMISQ8N1K5 641 aaPredicted RBP12.6□□□□□ -0.39
USP54-213ENST00000481991 PTPRKQ15262 1439 aa12.6□□□□□ -0.39
USP54-213ENST00000481991 PLA2R1Q13018 1463 aa12.59□□□□□ -0.39
USP54-213ENST00000481991 SHANK2Q9UPX8 1470 aa12.59□□□□□ -0.39
USP54-213ENST00000481991 CDC42BPBQ9Y5S2 1711 aa12.59□□□□□ -0.39
USP54-213ENST00000481991 KIDINS220Q9ULH0 1771 aa12.58□□□□□ -0.39
USP54-213ENST00000481991 CLTCQ00610 1675 aaKnown RBP12.58□□□□□ -0.4
USP54-213ENST00000481991 TCOF1Q13428 1488 aaKnown RBP12.58□□□□□ -0.4
USP54-213ENST00000481991 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP54-213ENST00000481991 CEP170BQ9Y4F5 1589 aaPredicted RBP12.57□□□□□ -0.4
USP54-213ENST00000481991 ARHGAP35Q9NRY4 1499 aa12.57□□□□□ -0.4
USP54-213ENST00000481991 ABCC1P33527 1531 aa12.57□□□□□ -0.4
USP54-213ENST00000481991 KIF3BO15066 747 aa12.56□□□□□ -0.4
USP54-213ENST00000481991 RGS17Q9UGC6 210 aaPredicted RBP12.56□□□□□ -0.4
USP54-213ENST00000481991 A2MP01023 1474 aa12.56□□□□□ -0.4
USP54-213ENST00000481991 CPS1P31327 1500 aa12.56□□□□□ -0.4
USP54-213ENST00000481991 WASHC2CQ9Y4E1 1318 aa12.56□□□□□ -0.4
USP54-213ENST00000481991 MYO3AQ8NEV4 1616 aa12.55□□□□□ -0.4
USP54-213ENST00000481991 TNRQ92752 1358 aa12.55□□□□□ -0.4
USP54-213ENST00000481991 MROH2AA6NES4 1674 aa12.54□□□□□ -0.4
USP54-213ENST00000481991 ITSN2Q9NZM3 1697 aa12.54□□□□□ -0.4
USP54-213ENST00000481991 A2ML1A8K2U0 1454 aa12.54□□□□□ -0.4
USP54-213ENST00000481991 SAMD9LQ8IVG5 1584 aa12.54□□□□□ -0.4
USP54-213ENST00000481991 PREX2Q70Z35 1606 aa12.52□□□□□ -0.4
USP54-213ENST00000481991 POTEAQ6S8J7 498 aa12.52□□□□□ -0.41
USP54-213ENST00000481991 CCNB3Q8WWL7 1395 aa12.52□□□□□ -0.41
USP54-213ENST00000481991 SYCP2Q9BX26 1530 aa12.52□□□□□ -0.41
USP54-213ENST00000481991 ZNF644Q9H582 1327 aaPredicted RBP12.51□□□□□ -0.41
USP54-213ENST00000481991 DNMT1P26358 1616 aaKnown RBP12.51□□□□□ -0.41
USP54-213ENST00000481991 NPHP4O75161 1426 aaPredicted RBP12.5□□□□□ -0.41
USP54-213ENST00000481991 ATP7AQ04656 1500 aa12.5□□□□□ -0.41
USP54-213ENST00000481991 ZNF142P52746 1687 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms