RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 DNMT1P26358 1616 aaKnown RBP17.72■□□□□ 0.43
PTPRF-212ENST00000477970 ITSN2Q9NZM3 1697 aa17.72■□□□□ 0.43
PTPRF-212ENST00000477970 PLB1Q6P1J6 1458 aa17.69■□□□□ 0.42
PTPRF-212ENST00000477970 ROCK1Q13464 1354 aa17.69■□□□□ 0.42
PTPRF-212ENST00000477970 TROQ12816 1431 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-212ENST00000477970 MIER1Q8N108 512 aa17.67■□□□□ 0.42
PTPRF-212ENST00000477970 SCAF1Q9H7N4 1312 aaKnown RBP17.66■□□□□ 0.42
PTPRF-212ENST00000477970 NPM1P06748 294 aaKnown RBP eCLIP17.66■□□□□ 0.42
PTPRF-212ENST00000477970 CDK11AQ9UQ88 783 aaPredicted RBP17.65■□□□□ 0.42
PTPRF-212ENST00000477970 MAP3K4Q9Y6R4 1608 aa17.63■□□□□ 0.41
PTPRF-212ENST00000477970 DAPK1P53355 1430 aa17.63■□□□□ 0.41
PTPRF-212ENST00000477970 ASXL2Q76L83 1435 aa17.62■□□□□ 0.41
PTPRF-212ENST00000477970 NEUROD1Q13562 356 aa17.62■□□□□ 0.41
PTPRF-212ENST00000477970 ADGBQ8N7X0 1667 aa17.62■□□□□ 0.41
PTPRF-212ENST00000477970 CROCC2H7BZ55 1655 aa17.62■□□□□ 0.41
PTPRF-212ENST00000477970 PPRC1Q5VV67 1664 aaKnown RBP17.6■□□□□ 0.41
PTPRF-212ENST00000477970 WDR7Q9Y4E6 1490 aa17.59■□□□□ 0.41
PTPRF-212ENST00000477970 SIN3AQ96ST3 1273 aa17.59■□□□□ 0.41
PTPRF-212ENST00000477970 KDM6BO15054 1643 aa17.59■□□□□ 0.41
PTPRF-212ENST00000477970 PPP1R15AO75807 674 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-212ENST00000477970 ABCC5O15440 1437 aa17.58■□□□□ 0.41
PTPRF-212ENST00000477970 DENND4BO75064 1496 aaPredicted RBP17.58■□□□□ 0.4
PTPRF-212ENST00000477970 KIF14Q15058 1648 aa17.57■□□□□ 0.4
PTPRF-212ENST00000477970 ATP10BO94823 1461 aa17.57■□□□□ 0.4
PTPRF-212ENST00000477970 TRHP20396 242 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-212ENST00000477970 ADGRL2O95490 1459 aa17.56■□□□□ 0.4
PTPRF-212ENST00000477970 GPATCH8Q9UKJ3 1502 aaKnown RBP17.56■□□□□ 0.4
PTPRF-212ENST00000477970 CAMSAP2Q08AD1 1489 aa17.55■□□□□ 0.4
PTPRF-212ENST00000477970 CDC42BPAQ5VT25 1732 aa17.54■□□□□ 0.4
PTPRF-212ENST00000477970 TONSLQ96HA7 1378 aa17.53■□□□□ 0.4
PTPRF-212ENST00000477970 ABCA9Q8IUA7 1624 aa17.53■□□□□ 0.4
PTPRF-212ENST00000477970 SHANK2Q9UPX8 1470 aa17.51■□□□□ 0.39
PTPRF-212ENST00000477970 TSPOAP1O95153 1857 aa17.5■□□□□ 0.39
PTPRF-212ENST00000477970 RRP7BPQ9NSQ0 103 aa17.48■□□□□ 0.39
PTPRF-212ENST00000477970 FAM69CQ0P6D2 419 aa17.47■□□□□ 0.39
PTPRF-212ENST00000477970 ARHGEF5Q12774 1597 aa17.46■□□□□ 0.39
PTPRF-212ENST00000477970 TEX14Q8IWB6 1497 aa17.45■□□□□ 0.38
PTPRF-212ENST00000477970 NCOA1Q15788 1441 aa17.44■□□□□ 0.38
PTPRF-212ENST00000477970 CHIC2Q9UKJ5 165 aa17.44■□□□□ 0.38
PTPRF-212ENST00000477970 MPHOSPH9Q99550 1183 aa17.43■□□□□ 0.38
PTPRF-212ENST00000477970 ARID3CA6NKF2 412 aa17.42■□□□□ 0.38
PTPRF-212ENST00000477970 PREX2Q70Z35 1606 aa17.42■□□□□ 0.38
PTPRF-212ENST00000477970 RPRD2Q5VT52 1461 aaKnown RBP17.42■□□□□ 0.38
PTPRF-212ENST00000477970 CFDP1Q9UEE9 299 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-212ENST00000477970 ANKRD30BQ9BXX2 1392 aa17.41■□□□□ 0.38
PTPRF-212ENST00000477970 ZNF644Q9H582 1327 aaPredicted RBP17.41■□□□□ 0.38
PTPRF-212ENST00000477970 KDM5DQ9BY66 1539 aa17.4■□□□□ 0.38
PTPRF-212ENST00000477970 PLEKHD1A6NEE1 506 aa17.4■□□□□ 0.38
PTPRF-212ENST00000477970 PZPP20742 1482 aa17.4■□□□□ 0.38
PTPRF-212ENST00000477970 CFAP74Q9C0B2 1584 aa17.39■□□□□ 0.37
PTPRF-212ENST00000477970 GTF3C3Q9Y5Q9 886 aa17.39■□□□□ 0.37
PTPRF-212ENST00000477970 ANKRD30AQ9BXX3 1397 aa17.37■□□□□ 0.37
PTPRF-212ENST00000477970 CDC42BPBQ9Y5S2 1711 aa17.37■□□□□ 0.37
PTPRF-212ENST00000477970 ARAP3Q8WWN8 1544 aa17.36■□□□□ 0.37
PTPRF-212ENST00000477970 TRIM52Q96A61 297 aa17.36■□□□□ 0.37
PTPRF-212ENST00000477970 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.36■□□□□ 0.37
PTPRF-212ENST00000477970 MAST1Q9Y2H9 1570 aa17.35■□□□□ 0.37
PTPRF-212ENST00000477970 YTHDC1Q96MU7 727 aaKnown RBP17.35■□□□□ 0.37
PTPRF-212ENST00000477970 CD109Q6YHK3 1445 aa17.35■□□□□ 0.37
PTPRF-212ENST00000477970 MYO5CQ9NQX4 1742 aa17.35■□□□□ 0.37
PTPRF-212ENST00000477970 TTC37Q6PGP7 1564 aa17.34■□□□□ 0.37
PTPRF-212ENST00000477970 SAMD9LQ8IVG5 1584 aa17.33■□□□□ 0.37
PTPRF-212ENST00000477970 C9orf84Q5VXU9 1444 aa17.32■□□□□ 0.36
PTPRF-212ENST00000477970 NEO1Q92859 1461 aa17.32■□□□□ 0.36
PTPRF-212ENST00000477970 MBD5Q9P267 1494 aa17.32■□□□□ 0.36
PTPRF-212ENST00000477970 POLR1AO95602 1720 aaPredicted RBP17.31■□□□□ 0.36
PTPRF-212ENST00000477970 KIAA1107Q9UPP5 1409 aa17.31■□□□□ 0.36
PTPRF-212ENST00000477970 ANKRD50Q9ULJ7 1429 aa17.3■□□□□ 0.36
PTPRF-212ENST00000477970 CCDC141Q6ZP82 1450 aa17.29■□□□□ 0.36
PTPRF-212ENST00000477970 CCER2I3L3R5 266 aa17.29■□□□□ 0.36
PTPRF-212ENST00000477970 RSPH4AQ5TD94 716 aa17.28■□□□□ 0.36
PTPRF-212ENST00000477970 DDX10Q13206 875 aaKnown RBP17.26■□□□□ 0.35
PTPRF-212ENST00000477970 PLEKHH2Q8IVE3 1493 aa17.26■□□□□ 0.35
PTPRF-212ENST00000477970 PLXNC1O60486 1568 aa17.26■□□□□ 0.35
PTPRF-212ENST00000477970 SLC4A1APQ9BWU0 796 aaKnown RBP17.25■□□□□ 0.35
PTPRF-212ENST00000477970 RICTORQ6R327 1708 aa17.24■□□□□ 0.35
PTPRF-212ENST00000477970 L3MBTL2Q969R5 705 aa17.24■□□□□ 0.35
PTPRF-212ENST00000477970 KCNH8Q96L42 1107 aa17.23■□□□□ 0.35
PTPRF-212ENST00000477970 UNC13BO14795 1591 aa17.23■□□□□ 0.35
PTPRF-212ENST00000477970 COL17A1Q9UMD9 1497 aaPredicted RBP17.23■□□□□ 0.35
PTPRF-212ENST00000477970 FRMPD1Q5SYB0 1578 aa17.23■□□□□ 0.35
PTPRF-212ENST00000477970 PLCH2O75038 1416 aa17.22■□□□□ 0.35
PTPRF-212ENST00000477970 ARHGEF12Q9NZN5 1544 aa17.22■□□□□ 0.35
PTPRF-212ENST00000477970 ZNF777Q9ULD5 760 aaPredicted RBP17.21■□□□□ 0.35
PTPRF-212ENST00000477970 SPATA31E1Q6ZUB1 1445 aa17.2■□□□□ 0.34
PTPRF-212ENST00000477970 EIF4G2P78344 907 aaKnown RBP eCLIP17.2■□□□□ 0.34
PTPRF-212ENST00000477970 ZMYM4Q5VZL5 1548 aa17.19■□□□□ 0.34
PTPRF-212ENST00000477970 KIF15Q9NS87 1388 aa17.19■□□□□ 0.34
PTPRF-212ENST00000477970 UHRF1BP1Q6BDS2 1440 aa17.19■□□□□ 0.34
PTPRF-212ENST00000477970 SYCP2Q9BX26 1530 aa17.19■□□□□ 0.34
PTPRF-212ENST00000477970 TSPY4P0CV99 314 aa17.19■□□□□ 0.34
PTPRF-212ENST00000477970 TSPY10P0CW01 314 aa17.19■□□□□ 0.34
PTPRF-212ENST00000477970 ARHGAP5Q13017 1502 aa17.18■□□□□ 0.34
PTPRF-212ENST00000477970 FANCAO15360 1455 aa17.18■□□□□ 0.34
PTPRF-212ENST00000477970 ANP32CO43423 234 aa17.18■□□□□ 0.34
PTPRF-212ENST00000477970 HSPA5P11021 654 aaKnown RBP17.18■□□□□ 0.34
PTPRF-212ENST00000477970 FOXD1Q16676 465 aa17.18■□□□□ 0.34
PTPRF-212ENST00000477970 PELP1Q8IZL8 1130 aaKnown RBP17.18■□□□□ 0.34
PTPRF-212ENST00000477970 IQGAP3Q86VI3 1631 aa17.15■□□□□ 0.34
PTPRF-212ENST00000477970 CNTLNQ9NXG0 1405 aa17.14■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms