RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 VSIG10Q8N0Z9 540 aa14.92□□□□□ -0.02
U2AF1-209ENST00000475639 ZNF777Q9ULD5 760 aaPredicted RBP14.92□□□□□ -0.02
U2AF1-209ENST00000475639 NAP1L5Q96NT1 182 aaPredicted RBP14.89□□□□□ -0.03
U2AF1-209ENST00000475639 CCDC7Q96M83 1385 aa14.87□□□□□ -0.03
U2AF1-209ENST00000475639 MS4A1P11836 297 aa14.87□□□□□ -0.03
U2AF1-209ENST00000475639 EIF4G2P78344 907 aaKnown RBP eCLIP14.87□□□□□ -0.03
U2AF1-209ENST00000475639 A0A0G2JS52 829 aa14.87□□□□□ -0.03
U2AF1-209ENST00000475639 CCDC18Q5T9S5 1454 aa14.87□□□□□ -0.03
U2AF1-209ENST00000475639 NCOA1Q15788 1441 aa14.86□□□□□ -0.03
U2AF1-209ENST00000475639 UACAQ9BZF9 1416 aa14.86□□□□□ -0.03
U2AF1-209ENST00000475639 SLC4A3P48751 1232 aa14.86□□□□□ -0.03
U2AF1-209ENST00000475639 SENP3-EIF4A1A0A087X0R7 540 aa14.85□□□□□ -0.03
U2AF1-209ENST00000475639 PLEKHG5O94827 1062 aa14.85□□□□□ -0.03
U2AF1-209ENST00000475639 BIVM-ERCC5R4GMW8 1640 aa14.85□□□□□ -0.03
U2AF1-209ENST00000475639 EXOC6Q8TAG9 804 aa14.84□□□□□ -0.03
U2AF1-209ENST00000475639 RRAGDQ9NQL2 400 aaPredicted RBP14.84□□□□□ -0.03
U2AF1-209ENST00000475639 TULP1O00294 542 aaPredicted RBP14.83□□□□□ -0.04
U2AF1-209ENST00000475639 GOLGA6L6A8MZA4 724 aa14.83□□□□□ -0.04
U2AF1-209ENST00000475639 PLCB2Q00722 1185 aa14.82□□□□□ -0.04
U2AF1-209ENST00000475639 FRAT2O75474 233 aaPredicted RBP14.81□□□□□ -0.04
U2AF1-209ENST00000475639 PODXL2Q9NZ53 605 aa14.81□□□□□ -0.04
U2AF1-209ENST00000475639 AQRO60306 1485 aaKnown RBP eCLIP14.81□□□□□ -0.04
U2AF1-209ENST00000475639 ARID3CA6NKF2 412 aa14.8□□□□□ -0.04
U2AF1-209ENST00000475639 CFAP43Q8NDM7 1665 aa14.8□□□□□ -0.04
U2AF1-209ENST00000475639 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.8□□□□□ -0.041e-7■■■■■ 38.4
U2AF1-209ENST00000475639 RRP1P56182 461 aaKnown RBP14.79□□□□□ -0.04
U2AF1-209ENST00000475639 SKAP1Q86WV1 359 aa14.79□□□□□ -0.04
U2AF1-209ENST00000475639 CASC1Q6TDU7 716 aa14.78□□□□□ -0.04
U2AF1-209ENST00000475639 HFM1A2PYH4 1435 aa14.78□□□□□ -0.04
U2AF1-209ENST00000475639 PTPN23Q9H3S7 1636 aa14.78□□□□□ -0.04
U2AF1-209ENST00000475639 CHAF1AQ13111 956 aaPredicted RBP14.77□□□□□ -0.04
U2AF1-209ENST00000475639 L1TD1Q5T7N2 865 aaKnown RBP14.77□□□□□ -0.04
U2AF1-209ENST00000475639 P3H3Q8IVL6 736 aa14.77□□□□□ -0.04
U2AF1-209ENST00000475639 PTPRKQ15262 1439 aa14.76□□□□□ -0.05
U2AF1-209ENST00000475639 KIF7Q2M1P5 1343 aa14.76□□□□□ -0.05
U2AF1-209ENST00000475639 ABCA5Q8WWZ7 1642 aa14.76□□□□□ -0.05
U2AF1-209ENST00000475639 HSP90AA2PQ14568 343 aaPredicted RBP14.75□□□□□ -0.05
U2AF1-209ENST00000475639 KIF27Q86VH2 1401 aa14.75□□□□□ -0.05
U2AF1-209ENST00000475639 RRP9O43818 475 aaKnown RBP14.73□□□□□ -0.05
U2AF1-209ENST00000475639 PLPPR3Q6T4P5 718 aa14.73□□□□□ -0.05
U2AF1-209ENST00000475639 TPRNQ4KMQ1 711 aa14.72□□□□□ -0.05
U2AF1-209ENST00000475639 PCF11O94913 1555 aaKnown RBP14.72□□□□□ -0.05
U2AF1-209ENST00000475639 NAIPQ13075 1403 aa14.72□□□□□ -0.05
U2AF1-209ENST00000475639 DHX29Q7Z478 1369 aaKnown RBP14.72□□□□□ -0.05
U2AF1-209ENST00000475639 POLR1AO95602 1720 aaPredicted RBP14.72□□□□□ -0.05
U2AF1-209ENST00000475639 FGD1P98174 961 aa14.7□□□□□ -0.06
U2AF1-209ENST00000475639 PNISRQ8TF01 805 aaKnown RBP14.7□□□□□ -0.06
U2AF1-209ENST00000475639 FGD6Q6ZV73 1430 aa14.7□□□□□ -0.06
U2AF1-209ENST00000475639 DENND4BO75064 1496 aaPredicted RBP14.7□□□□□ -0.06
U2AF1-209ENST00000475639 NPM1P06748 294 aaKnown RBP eCLIP14.69□□□□□ -0.06
U2AF1-209ENST00000475639 GOLGA6L4A6NEF3 574 aa14.69□□□□□ -0.06
U2AF1-209ENST00000475639 POGKQ9P215 609 aa14.69□□□□□ -0.06
U2AF1-209ENST00000475639 RCAN3Q9UKA8 241 aa14.69□□□□□ -0.06
U2AF1-209ENST00000475639 L3MBTL2Q969R5 705 aa14.68□□□□□ -0.06
U2AF1-209ENST00000475639 AMER1Q5JTC6 1135 aaPredicted RBP14.68□□□□□ -0.06
U2AF1-209ENST00000475639 PNNQ9H307 717 aaKnown RBP14.68□□□□□ -0.06
U2AF1-209ENST00000475639 SPATA31E1Q6ZUB1 1445 aa14.68□□□□□ -0.06
U2AF1-209ENST00000475639 UNC13AQ9UPW8 1703 aa14.68□□□□□ -0.06
U2AF1-209ENST00000475639 NCBP3Q53F19 620 aaKnown RBP14.68□□□□□ -0.06
U2AF1-209ENST00000475639 FMN1Q68DA7 1419 aa14.67□□□□□ -0.06
U2AF1-209ENST00000475639 CUX1P39880 1505 aa14.65□□□□□ -0.06
U2AF1-209ENST00000475639 NBPF8Q3BBV2 869 aa14.65□□□□□ -0.06
U2AF1-209ENST00000475639 MSNP26038 577 aaKnown RBP14.64□□□□□ -0.07
U2AF1-209ENST00000475639 CFAP53Q96M91 514 aa14.64□□□□□ -0.07
U2AF1-209ENST00000475639 TNNT3P45378 269 aaPredicted RBP14.63□□□□□ -0.07
U2AF1-209ENST00000475639 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.63□□□□□ -0.07
U2AF1-209ENST00000475639 CLCN1P35523 988 aa14.63□□□□□ -0.07
U2AF1-209ENST00000475639 C14orf37Q86TY3 774 aa14.63□□□□□ -0.07
U2AF1-209ENST00000475639 KDM2AQ9Y2K7 1162 aa14.63□□□□□ -0.07
U2AF1-209ENST00000475639 FTSJ3Q8IY81 847 aaKnown RBP14.62□□□□□ -0.07
U2AF1-209ENST00000475639 TSPY4P0CV99 314 aa14.62□□□□□ -0.07
U2AF1-209ENST00000475639 TSPY10P0CW01 314 aa14.62□□□□□ -0.07
U2AF1-209ENST00000475639 C8orf34Q49A92 452 aa14.62□□□□□ -0.07
U2AF1-209ENST00000475639 LRPPRCP42704 1394 aaKnown RBP14.62□□□□□ -0.07
U2AF1-209ENST00000475639 CHMP4BQ9H444 224 aaKnown RBP14.62□□□□□ -0.07
U2AF1-209ENST00000475639 KCNJ4P48050 445 aa14.62□□□□□ -0.07
U2AF1-209ENST00000475639 ZBTB7CA1YPR0 619 aa14.61□□□□□ -0.07
U2AF1-209ENST00000475639 PLIN1O60240 522 aa14.61□□□□□ -0.07
U2AF1-209ENST00000475639 HECW1Q76N89 1606 aa14.6□□□□□ -0.07
U2AF1-209ENST00000475639 HSP90AB1P08238 724 aaKnown RBP14.6□□□□□ -0.07
U2AF1-209ENST00000475639 FAM161AQ3B820 660 aa14.59□□□□□ -0.07
U2AF1-209ENST00000475639 CRBNQ96SW2 442 aa14.59□□□□□ -0.07
U2AF1-209ENST00000475639 TAOK2Q9UL54 1235 aa14.59□□□□□ -0.07
U2AF1-209ENST00000475639 ATAD2BQ9ULI0 1458 aa14.58□□□□□ -0.07
U2AF1-209ENST00000475639 FYCO1Q9BQS8 1478 aa14.58□□□□□ -0.08
U2AF1-209ENST00000475639 KDM2BQ8NHM5 1336 aa14.57□□□□□ -0.08
U2AF1-209ENST00000475639 IGF1RP08069 1367 aa14.56□□□□□ -0.08
U2AF1-209ENST00000475639 XRCC6P12956 609 aaKnown RBP eCLIP14.56□□□□□ -0.08
U2AF1-209ENST00000475639 HAP1P54257 671 aaPredicted RBP14.56□□□□□ -0.08
U2AF1-209ENST00000475639 NAP1L2Q9ULW6 460 aaPredicted RBP14.56□□□□□ -0.08
U2AF1-209ENST00000475639 CLSTN1O94985 981 aa14.56□□□□□ -0.08
U2AF1-209ENST00000475639 FOXD1Q16676 465 aa14.56□□□□□ -0.08
U2AF1-209ENST00000475639 BCORL1Q5H9F3 1711 aa14.55□□□□□ -0.08
U2AF1-209ENST00000475639 RGS3P49796 1198 aa14.55□□□□□ -0.08
U2AF1-209ENST00000475639 DRC7Q8IY82 874 aa14.55□□□□□ -0.08
U2AF1-209ENST00000475639 KTN1Q86UP2 1357 aaKnown RBP14.55□□□□□ -0.08
U2AF1-209ENST00000475639 FHOD3Q2V2M9 1422 aa14.55□□□□□ -0.08
U2AF1-209ENST00000475639 TEX14Q8IWB6 1497 aa14.55□□□□□ -0.08
U2AF1-209ENST00000475639 KIAA2012Q0VF49 1180 aa14.54□□□□□ -0.08
U2AF1-209ENST00000475639 RRP7BPQ9NSQ0 103 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms