RNA–Protein interactions for RNA: ENST00000475403.2

LSAMP-204, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 477 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-204ENST00000475403 STRCQ7RTU9 1775 aa11.51□□□□□ -0.57
LSAMP-204ENST00000475403 NUP153P49790 1475 aaKnown RBP11.51□□□□□ -0.57
LSAMP-204ENST00000475403 PRXQ9BXM0 1461 aa11.51□□□□□ -0.57
LSAMP-204ENST00000475403 SAMD9Q5K651 1589 aa11.51□□□□□ -0.57
LSAMP-204ENST00000475403 HECW1Q76N89 1606 aa11.51□□□□□ -0.57
LSAMP-204ENST00000475403 C9orf84Q5VXU9 1444 aa11.51□□□□□ -0.57
LSAMP-204ENST00000475403 ARHGEF12Q9NZN5 1544 aa11.5□□□□□ -0.57
LSAMP-204ENST00000475403 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.5□□□□□ -0.57
LSAMP-204ENST00000475403 CEBPAP49715 358 aaPredicted RBP11.49□□□□□ -0.57
LSAMP-204ENST00000475403 RANGAP1P46060 587 aaPredicted RBP11.48□□□□□ -0.57
LSAMP-204ENST00000475403 ATP10AO60312 1499 aa11.48□□□□□ -0.57
LSAMP-204ENST00000475403 PTPRTO14522 1441 aa11.47□□□□□ -0.57
LSAMP-204ENST00000475403 SCAPERQ9BY12 1400 aa11.47□□□□□ -0.57
LSAMP-204ENST00000475403 MYT1LQ9UL68 1186 aa11.47□□□□□ -0.57
LSAMP-204ENST00000475403 IQSEC2Q5JU85 1478 aa11.46□□□□□ -0.57
LSAMP-204ENST00000475403 ESF1Q9H501 851 aaKnown RBP11.46□□□□□ -0.57
LSAMP-204ENST00000475403 SETD1BQ9UPS6 1966 aaKnown RBP11.45□□□□□ -0.58
LSAMP-204ENST00000475403 LTBP4Q8N2S1 1624 aa11.42□□□□□ -0.58
LSAMP-204ENST00000475403 ZNF518AQ6AHZ1 1483 aa11.41□□□□□ -0.58
LSAMP-204ENST00000475403 UBAP1LF5GYI3 381 aa11.41□□□□□ -0.58
LSAMP-204ENST00000475403 PLCH2O75038 1416 aa11.41□□□□□ -0.58
LSAMP-204ENST00000475403 MYO5CQ9NQX4 1742 aa11.4□□□□□ -0.58
LSAMP-204ENST00000475403 C3P01024 1663 aa11.4□□□□□ -0.58
LSAMP-204ENST00000475403 NCOA1Q15788 1441 aa11.39□□□□□ -0.59
LSAMP-204ENST00000475403 EFCAB2Q5VUJ9 269 aa11.39□□□□□ -0.59
LSAMP-204ENST00000475403 CDK13Q14004 1512 aaKnown RBP11.38□□□□□ -0.59
LSAMP-204ENST00000475403 SCAF1Q9H7N4 1312 aaKnown RBP11.37□□□□□ -0.59
LSAMP-204ENST00000475403 TRAPPC8Q9Y2L5 1435 aa11.37□□□□□ -0.59
LSAMP-204ENST00000475403 ARHGAP5Q13017 1502 aa11.37□□□□□ -0.59
LSAMP-204ENST00000475403 CAMSAP1Q5T5Y3 1602 aa11.36□□□□□ -0.59
LSAMP-204ENST00000475403 ATP1B4Q9UN42 357 aaPredicted RBP11.36□□□□□ -0.59
LSAMP-204ENST00000475403 DIP2CQ9Y2E4 1556 aa11.36□□□□□ -0.59
LSAMP-204ENST00000475403 PHF23Q9BUL5 403 aaPredicted RBP11.35□□□□□ -0.59
LSAMP-204ENST00000475403 KDM5CP41229 1560 aa11.35□□□□□ -0.59
LSAMP-204ENST00000475403 KIF14Q15058 1648 aa11.35□□□□□ -0.59
LSAMP-204ENST00000475403 CNTLNQ9NXG0 1405 aa11.35□□□□□ -0.59
LSAMP-204ENST00000475403 MED1Q15648 1581 aaPredicted RBP11.34□□□□□ -0.59
LSAMP-204ENST00000475403 REREQ9P2R6 1566 aa11.34□□□□□ -0.59
LSAMP-204ENST00000475403 AFAP1Q8N556 730 aa11.34□□□□□ -0.59
LSAMP-204ENST00000475403 ABCA6Q8N139 1617 aa11.34□□□□□ -0.59
LSAMP-204ENST00000475403 ZNF335Q9H4Z2 1342 aaPredicted RBP11.34□□□□□ -0.59
LSAMP-204ENST00000475403 CSRNP3Q8WYN3 585 aa11.33□□□□□ -0.6
LSAMP-204ENST00000475403 CDK11AQ9UQ88 783 aaPredicted RBP11.33□□□□□ -0.6
LSAMP-204ENST00000475403 AGLP35573 1532 aa11.32□□□□□ -0.6
LSAMP-204ENST00000475403 NCKAP5LQ9HCH0 1330 aa11.32□□□□□ -0.6
LSAMP-204ENST00000475403 SUPT6HQ7KZ85 1726 aaKnown RBP11.32□□□□□ -0.6
LSAMP-204ENST00000475403 CLIP1P30622 1438 aa11.31□□□□□ -0.6
LSAMP-204ENST00000475403 NPATQ14207 1427 aa11.3□□□□□ -0.6
LSAMP-204ENST00000475403 PIP4K2BP78356 416 aa11.3□□□□□ -0.6
LSAMP-204ENST00000475403 MLH3Q9UHC1 1453 aa11.29□□□□□ -0.6
LSAMP-204ENST00000475403 MROH2AA6NES4 1674 aa11.28□□□□□ -0.6
LSAMP-204ENST00000475403 HSPA1LP34931 641 aa11.28□□□□□ -0.6
LSAMP-204ENST00000475403 PKD2Q13563 968 aa11.28□□□□□ -0.6
LSAMP-204ENST00000475403 MYO3AQ8NEV4 1616 aa11.27□□□□□ -0.6
LSAMP-204ENST00000475403 PLA2R1Q13018 1463 aa11.27□□□□□ -0.6
LSAMP-204ENST00000475403 TOM1O60784 492 aa11.27□□□□□ -0.61
LSAMP-204ENST00000475403 PPP6R1Q9UPN7 881 aa11.27□□□□□ -0.61
LSAMP-204ENST00000475403 FMN1Q68DA7 1419 aa11.26□□□□□ -0.61
LSAMP-204ENST00000475403 ZNF142P52746 1687 aaPredicted RBP11.26□□□□□ -0.61
LSAMP-204ENST00000475403 TROQ12816 1431 aaPredicted RBP11.26□□□□□ -0.61
LSAMP-204ENST00000475403 ABCC1P33527 1531 aa11.25□□□□□ -0.61
LSAMP-204ENST00000475403 CEP170BQ9Y4F5 1589 aaPredicted RBP11.25□□□□□ -0.61
LSAMP-204ENST00000475403 ITSN2Q9NZM3 1697 aa11.25□□□□□ -0.61
LSAMP-204ENST00000475403 EEA1Q15075 1411 aa11.25□□□□□ -0.61
LSAMP-204ENST00000475403 ZMYM3Q14202 1370 aa11.24□□□□□ -0.61
LSAMP-204ENST00000475403 CDC42BPBQ9Y5S2 1711 aa11.23□□□□□ -0.61
LSAMP-204ENST00000475403 PREX2Q70Z35 1606 aa11.23□□□□□ -0.61
LSAMP-204ENST00000475403 CLTCQ00610 1675 aaKnown RBP11.23□□□□□ -0.61
LSAMP-204ENST00000475403 KIDINS220Q9ULH0 1771 aa11.23□□□□□ -0.61
LSAMP-204ENST00000475403 CPS1P31327 1500 aa11.22□□□□□ -0.61
LSAMP-204ENST00000475403 TCOF1Q13428 1488 aaKnown RBP11.22□□□□□ -0.61
LSAMP-204ENST00000475403 SENP3Q9H4L4 574 aaPredicted RBP11.2□□□□□ -0.62
LSAMP-204ENST00000475403 PTPRKQ15262 1439 aa11.18□□□□□ -0.62
LSAMP-204ENST00000475403 POLR1AO95602 1720 aaPredicted RBP11.18□□□□□ -0.62
LSAMP-204ENST00000475403 ZNF777Q9ULD5 760 aaPredicted RBP11.18□□□□□ -0.62
LSAMP-204ENST00000475403 SPAG9O60271 1321 aaKnown RBP11.17□□□□□ -0.62
LSAMP-204ENST00000475403 SAMD9LQ8IVG5 1584 aa11.17□□□□□ -0.62
LSAMP-204ENST00000475403 GGT6Q6P531 493 aa11.17□□□□□ -0.62
LSAMP-204ENST00000475403 EHMT2Q96KQ7 1210 aa11.17□□□□□ -0.62
LSAMP-204ENST00000475403 SHANK2Q9UPX8 1470 aa11.17□□□□□ -0.62
LSAMP-204ENST00000475403 SYCP2Q9BX26 1530 aa11.16□□□□□ -0.62
LSAMP-204ENST00000475403 UBTFP17480 764 aaKnown RBP11.16□□□□□ -0.62
LSAMP-204ENST00000475403 A2ML1A8K2U0 1454 aa11.16□□□□□ -0.62
LSAMP-204ENST00000475403 ATP7AQ04656 1500 aa11.15□□□□□ -0.62
LSAMP-204ENST00000475403 DNMT1P26358 1616 aaKnown RBP11.15□□□□□ -0.62
LSAMP-204ENST00000475403 CDC42BPAQ5VT25 1732 aa11.15□□□□□ -0.63
LSAMP-204ENST00000475403 A2MP01023 1474 aa11.14□□□□□ -0.63
LSAMP-204ENST00000475403 CCDC18Q5T9S5 1454 aa11.14□□□□□ -0.63
LSAMP-204ENST00000475403 ARHGAP35Q9NRY4 1499 aa11.14□□□□□ -0.63
LSAMP-204ENST00000475403 LRRIQ1Q96JM4 1722 aa11.14□□□□□ -0.63
LSAMP-204ENST00000475403 PLXNC1O60486 1568 aa11.13□□□□□ -0.63
LSAMP-204ENST00000475403 NEURL4Q96JN8 1562 aa11.12□□□□□ -0.63
LSAMP-204ENST00000475403 ANKLE2Q86XL3 938 aa11.11□□□□□ -0.63
LSAMP-204ENST00000475403 INO80Q9ULG1 1556 aaPredicted RBP11.11□□□□□ -0.63
LSAMP-204ENST00000475403 RNF17Q9BXT8 1623 aaKnown RBP11.1□□□□□ -0.63
LSAMP-204ENST00000475403 HNRNPMP52272 730 aaKnown RBP eCLIP11.1□□□□□ -0.63
LSAMP-204ENST00000475403 TNRQ92752 1358 aa11.1□□□□□ -0.63
LSAMP-204ENST00000475403 ADGBQ8N7X0 1667 aa11.1□□□□□ -0.63
LSAMP-204ENST00000475403 VWDEQ8N2E2 1590 aa11.09□□□□□ -0.63
LSAMP-204ENST00000475403 PLEKHH2Q8IVE3 1493 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms