RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SIGLEC1Q9BZZ2 1709 aa14.29□□□□□ -0.12
USP54-211ENST00000474929 C9orf84Q5VXU9 1444 aa14.29□□□□□ -0.12
USP54-211ENST00000474929 MLECQ14165 292 aa14.28□□□□□ -0.12
USP54-211ENST00000474929 NCOA1Q15788 1441 aa14.28□□□□□ -0.12
USP54-211ENST00000474929 HECW1Q76N89 1606 aa14.25□□□□□ -0.13
USP54-211ENST00000474929 ATP10AO60312 1499 aa14.25□□□□□ -0.13
USP54-211ENST00000474929 RAPGEF6Q8TEU7 1601 aa14.21□□□□□ -0.13
USP54-211ENST00000474929 TRAPPC8Q9Y2L5 1435 aa14.2□□□□□ -0.14
USP54-211ENST00000474929 C3P01024 1663 aa14.19□□□□□ -0.14
USP54-211ENST00000474929 CEBPAP49715 358 aaPredicted RBP14.18□□□□□ -0.14
USP54-211ENST00000474929 CAMSAP1Q5T5Y3 1602 aa14.17□□□□□ -0.14
USP54-211ENST00000474929 ARID3CA6NKF2 412 aa14.17□□□□□ -0.14
USP54-211ENST00000474929 SUPT5HO00267 1087 aaKnown RBP14.17□□□□□ -0.14
USP54-211ENST00000474929 REREQ9P2R6 1566 aa14.17□□□□□ -0.14
USP54-211ENST00000474929 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.16□□□□□ -0.14
USP54-211ENST00000474929 TOM1O60784 492 aa14.16□□□□□ -0.14
USP54-211ENST00000474929 HNRNPUL2Q1KMD3 747 aaKnown RBP14.16□□□□□ -0.14
USP54-211ENST00000474929 CNTLNQ9NXG0 1405 aa14.15□□□□□ -0.14
USP54-211ENST00000474929 PLA2R1Q13018 1463 aa14.15□□□□□ -0.14
USP54-211ENST00000474929 HSPA1LP34931 641 aa14.15□□□□□ -0.14
USP54-211ENST00000474929 ESF1Q9H501 851 aaKnown RBP14.15□□□□□ -0.14
USP54-211ENST00000474929 ZNF335Q9H4Z2 1342 aaPredicted RBP14.15□□□□□ -0.15
USP54-211ENST00000474929 SCAF1Q9H7N4 1312 aaKnown RBP14.15□□□□□ -0.15
USP54-211ENST00000474929 AGLP35573 1532 aa14.14□□□□□ -0.15
USP54-211ENST00000474929 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP54-211ENST00000474929 NPATQ14207 1427 aa14.13□□□□□ -0.15
USP54-211ENST00000474929 SCAPERQ9BY12 1400 aa14.13□□□□□ -0.15
USP54-211ENST00000474929 CPS1P31327 1500 aa14.12□□□□□ -0.15
USP54-211ENST00000474929 PKD2Q13563 968 aa14.12□□□□□ -0.15
USP54-211ENST00000474929 ZNF518AQ6AHZ1 1483 aa14.12□□□□□ -0.15
USP54-211ENST00000474929 PLEKHD1A6NEE1 506 aa14.11□□□□□ -0.15
USP54-211ENST00000474929 PTPRKQ15262 1439 aa14.09□□□□□ -0.15
USP54-211ENST00000474929 NUP153P49790 1475 aaKnown RBP14.09□□□□□ -0.15
USP54-211ENST00000474929 ZNF142P52746 1687 aaPredicted RBP14.09□□□□□ -0.15
USP54-211ENST00000474929 KDM5CP41229 1560 aa14.08□□□□□ -0.16
USP54-211ENST00000474929 SAMD9Q5K651 1589 aa14.08□□□□□ -0.16
USP54-211ENST00000474929 MROH2AA6NES4 1674 aa14.07□□□□□ -0.16
USP54-211ENST00000474929 TCOF1Q13428 1488 aaKnown RBP14.07□□□□□ -0.16
USP54-211ENST00000474929 PIP4K2BP78356 416 aa14.07□□□□□ -0.16
USP54-211ENST00000474929 PLCH2O75038 1416 aa14.06□□□□□ -0.16
USP54-211ENST00000474929 DIP2CQ9Y2E4 1556 aa14.05□□□□□ -0.16
USP54-211ENST00000474929 SUPT6HQ7KZ85 1726 aaKnown RBP14.05□□□□□ -0.16
USP54-211ENST00000474929 PPP6R1Q9UPN7 881 aa14.04□□□□□ -0.16
USP54-211ENST00000474929 MYO3AQ8NEV4 1616 aa14.02□□□□□ -0.16
USP54-211ENST00000474929 MYO5CQ9NQX4 1742 aa14.01□□□□□ -0.17
USP54-211ENST00000474929 CEP170BQ9Y4F5 1589 aaPredicted RBP14□□□□□ -0.17
USP54-211ENST00000474929 NCKAP5LQ9HCH0 1330 aa14□□□□□ -0.17
USP54-211ENST00000474929 PRXQ9BXM0 1461 aa13.99□□□□□ -0.17
USP54-211ENST00000474929 EFCAB2Q5VUJ9 269 aa13.99□□□□□ -0.17
USP54-211ENST00000474929 MLH3Q9UHC1 1453 aa13.99□□□□□ -0.17
USP54-211ENST00000474929 ABCA6Q8N139 1617 aa13.98□□□□□ -0.17
USP54-211ENST00000474929 P3H3Q8IVL6 736 aa13.97□□□□□ -0.17
USP54-211ENST00000474929 MYT1LQ9UL68 1186 aa13.97□□□□□ -0.17
USP54-211ENST00000474929 SHANK2Q9UPX8 1470 aa13.96□□□□□ -0.17
USP54-211ENST00000474929 POLR1AO95602 1720 aaPredicted RBP13.95□□□□□ -0.18
USP54-211ENST00000474929 RNF17Q9BXT8 1623 aaKnown RBP13.93□□□□□ -0.18
USP54-211ENST00000474929 SYNMO15061 1565 aa13.92□□□□□ -0.18
USP54-211ENST00000474929 ARHGAP5Q13017 1502 aa13.91□□□□□ -0.18
USP54-211ENST00000474929 ZMYM3Q14202 1370 aa13.91□□□□□ -0.18
USP54-211ENST00000474929 RGS17Q9UGC6 210 aaPredicted RBP13.9□□□□□ -0.18
USP54-211ENST00000474929 KIF14Q15058 1648 aa13.9□□□□□ -0.19
USP54-211ENST00000474929 ALKQ9UM73 1620 aa13.9□□□□□ -0.19
USP54-211ENST00000474929 A2ML1A8K2U0 1454 aa13.89□□□□□ -0.19
USP54-211ENST00000474929 AFAP1Q8N556 730 aa13.87□□□□□ -0.19
USP54-211ENST00000474929 NEURL4Q96JN8 1562 aa13.86□□□□□ -0.19
USP54-211ENST00000474929 VWDEQ8N2E2 1590 aa13.85□□□□□ -0.19
USP54-211ENST00000474929 DNMT1P26358 1616 aaKnown RBP13.85□□□□□ -0.19
USP54-211ENST00000474929 CDK11AQ9UQ88 783 aaPredicted RBP13.84□□□□□ -0.19
USP54-211ENST00000474929 CLTCQ00610 1675 aaKnown RBP13.84□□□□□ -0.19
USP54-211ENST00000474929 ABCC1P33527 1531 aa13.84□□□□□ -0.19
USP54-211ENST00000474929 CDK13Q14004 1512 aaKnown RBP13.84□□□□□ -0.19
USP54-211ENST00000474929 CLIP1P30622 1438 aa13.83□□□□□ -0.2
USP54-211ENST00000474929 SETD1AO15047 1707 aaKnown RBP13.83□□□□□ -0.2
USP54-211ENST00000474929 KIDINS220Q9ULH0 1771 aa13.83□□□□□ -0.2
USP54-211ENST00000474929 ITSN2Q9NZM3 1697 aa13.82□□□□□ -0.2
USP54-211ENST00000474929 POTEAQ6S8J7 498 aa13.81□□□□□ -0.2
USP54-211ENST00000474929 DEPDC5O75140 1603 aa13.81□□□□□ -0.2
USP54-211ENST00000474929 MED14O60244 1454 aa13.8□□□□□ -0.2
USP54-211ENST00000474929 PREX2Q70Z35 1606 aa13.78□□□□□ -0.2
USP54-211ENST00000474929 NPHP4O75161 1426 aaPredicted RBP13.77□□□□□ -0.21
USP54-211ENST00000474929 ANKLE2Q86XL3 938 aa13.77□□□□□ -0.21
USP54-211ENST00000474929 LRRC7Q96NW7 1537 aa13.77□□□□□ -0.21
USP54-211ENST00000474929 PLXNC1O60486 1568 aa13.76□□□□□ -0.21
USP54-211ENST00000474929 TROQ12816 1431 aaPredicted RBP13.76□□□□□ -0.21
USP54-211ENST00000474929 IQGAP1P46940 1657 aa13.75□□□□□ -0.21
USP54-211ENST00000474929 FAM135AQ9P2D6 1515 aa13.75□□□□□ -0.21
USP54-211ENST00000474929 SENP3Q9H4L4 574 aaPredicted RBP13.75□□□□□ -0.21
USP54-211ENST00000474929 CDC42BPBQ9Y5S2 1711 aa13.75□□□□□ -0.21
USP54-211ENST00000474929 UPF1Q92900 1129 aaKnown RBP eCLIP13.74□□□□□ -0.21
USP54-211ENST00000474929 FAM135BQ49AJ0 1406 aa13.73□□□□□ -0.21
USP54-211ENST00000474929 SAMD9LQ8IVG5 1584 aa13.72□□□□□ -0.21
USP54-211ENST00000474929 FOXD1Q16676 465 aa13.72□□□□□ -0.21
USP54-211ENST00000474929 NLRP1Q9C000 1473 aa13.72□□□□□ -0.21
USP54-211ENST00000474929 FMN1Q68DA7 1419 aa13.72□□□□□ -0.21
USP54-211ENST00000474929 TNRQ92752 1358 aa13.71□□□□□ -0.21
USP54-211ENST00000474929 THEMISQ8N1K5 641 aaPredicted RBP13.71□□□□□ -0.21
USP54-211ENST00000474929 ATP7AQ04656 1500 aa13.7□□□□□ -0.22
USP54-211ENST00000474929 A2MP01023 1474 aa13.7□□□□□ -0.22
USP54-211ENST00000474929 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.7□□□□□ -0.22
USP54-211ENST00000474929 LRRC9Q6ZRR7 1453 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms