RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 FRMPD1Q5SYB0 1578 aa11.19□□□□□ -0.62
LIMD1-204ENST00000474665 FYCO1Q9BQS8 1478 aa11.18□□□□□ -0.62
LIMD1-204ENST00000474665 PTPRTO14522 1441 aa11.18□□□□□ -0.62
LIMD1-204ENST00000474665 VPS8Q8N3P4 1428 aa11.18□□□□□ -0.62
LIMD1-204ENST00000474665 HECW1Q76N89 1606 aa11.17□□□□□ -0.62
LIMD1-204ENST00000474665 IQSEC2Q5JU85 1478 aa11.17□□□□□ -0.62
LIMD1-204ENST00000474665 POGZQ7Z3K3 1410 aa11.17□□□□□ -0.62
LIMD1-204ENST00000474665 HSPA1LP34931 641 aa11.16□□□□□ -0.62
LIMD1-204ENST00000474665 PHF23Q9BUL5 403 aaPredicted RBP11.16□□□□□ -0.62
LIMD1-204ENST00000474665 PREX1Q8TCU6 1659 aa11.15□□□□□ -0.62
LIMD1-204ENST00000474665 SIGLEC1Q9BZZ2 1709 aa11.15□□□□□ -0.63
LIMD1-204ENST00000474665 ATP1B4Q9UN42 357 aaPredicted RBP11.14□□□□□ -0.63
LIMD1-204ENST00000474665 ARHGEF40Q8TER5 1519 aa11.14□□□□□ -0.63
LIMD1-204ENST00000474665 FANCAO15360 1455 aa11.13□□□□□ -0.63
LIMD1-204ENST00000474665 NEO1Q92859 1461 aa11.13□□□□□ -0.63
LIMD1-204ENST00000474665 TTC37Q6PGP7 1564 aa11.12□□□□□ -0.63
LIMD1-204ENST00000474665 SCAF1Q9H7N4 1312 aaKnown RBP11.11□□□□□ -0.63
LIMD1-204ENST00000474665 UHRF1BP1Q6BDS2 1440 aa11.11□□□□□ -0.63
LIMD1-204ENST00000474665 FER1L4A9Z1Z3 1794 aa11.11□□□□□ -0.63
LIMD1-204ENST00000474665 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.11□□□□□ -0.63
LIMD1-204ENST00000474665 HNRNPUL2Q1KMD3 747 aaKnown RBP11.11□□□□□ -0.63
LIMD1-204ENST00000474665 CCDC18Q5T9S5 1454 aa11.11□□□□□ -0.63
LIMD1-204ENST00000474665 AKNAQ7Z591 1439 aa11.1□□□□□ -0.63
LIMD1-204ENST00000474665 ZNF335Q9H4Z2 1342 aaPredicted RBP11.09□□□□□ -0.63
LIMD1-204ENST00000474665 PLEKHD1A6NEE1 506 aa11.09□□□□□ -0.63
LIMD1-204ENST00000474665 PIP4K2BP78356 416 aa11.09□□□□□ -0.63
LIMD1-204ENST00000474665 ABCA9Q8IUA7 1624 aa11.09□□□□□ -0.63
LIMD1-204ENST00000474665 DENND4BO75064 1496 aaPredicted RBP11.08□□□□□ -0.64
LIMD1-204ENST00000474665 KIF14Q15058 1648 aa11.08□□□□□ -0.64
LIMD1-204ENST00000474665 TROQ12816 1431 aaPredicted RBP11.08□□□□□ -0.64
LIMD1-204ENST00000474665 TIAM1Q13009 1591 aa11.07□□□□□ -0.64
LIMD1-204ENST00000474665 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.06□□□□□ -0.64
LIMD1-204ENST00000474665 KANK4Q5T7N3 995 aaPredicted RBP11.06□□□□□ -0.64
LIMD1-204ENST00000474665 MAP3K1Q13233 1512 aa11.05□□□□□ -0.64
LIMD1-204ENST00000474665 ZFYVE16Q7Z3T8 1539 aa11.04□□□□□ -0.64
LIMD1-204ENST00000474665 ARHGEF12Q9NZN5 1544 aa11.04□□□□□ -0.64
LIMD1-204ENST00000474665 RICTORQ6R327 1708 aa11.04□□□□□ -0.64
LIMD1-204ENST00000474665 CDK11AQ9UQ88 783 aaPredicted RBP11.04□□□□□ -0.64
LIMD1-204ENST00000474665 NCKAP5LQ9HCH0 1330 aa11.03□□□□□ -0.64
LIMD1-204ENST00000474665 LRRC9Q6ZRR7 1453 aa11.02□□□□□ -0.65
LIMD1-204ENST00000474665 RGS17Q9UGC6 210 aaPredicted RBP11.02□□□□□ -0.65
LIMD1-204ENST00000474665 NCOA1Q15788 1441 aa11.01□□□□□ -0.65
LIMD1-204ENST00000474665 SENP3Q9H4L4 574 aaPredicted RBP11.01□□□□□ -0.65
LIMD1-204ENST00000474665 MTUS2Q5JR59 1369 aa11.01□□□□□ -0.65
LIMD1-204ENST00000474665 EHBP1L1Q8N3D4 1523 aa11□□□□□ -0.65
LIMD1-204ENST00000474665 SETD1BQ9UPS6 1966 aaKnown RBP11□□□□□ -0.65
LIMD1-204ENST00000474665 CDC42BPAQ5VT25 1732 aa10.99□□□□□ -0.65
LIMD1-204ENST00000474665 ZMYM4Q5VZL5 1548 aa10.99□□□□□ -0.65
LIMD1-204ENST00000474665 CDC42BPBQ9Y5S2 1711 aa10.98□□□□□ -0.65
LIMD1-204ENST00000474665 PLCH2O75038 1416 aa10.98□□□□□ -0.65
LIMD1-204ENST00000474665 NCOA2Q15596 1464 aa10.98□□□□□ -0.65
LIMD1-204ENST00000474665 GPATCH8Q9UKJ3 1502 aaKnown RBP10.98□□□□□ -0.65
LIMD1-204ENST00000474665 TOM1O60784 492 aa10.97□□□□□ -0.65
LIMD1-204ENST00000474665 ATP10AO60312 1499 aa10.97□□□□□ -0.65
LIMD1-204ENST00000474665 MAGI2Q86UL8 1455 aa10.97□□□□□ -0.65
LIMD1-204ENST00000474665 MYO5CQ9NQX4 1742 aa10.97□□□□□ -0.65
LIMD1-204ENST00000474665 SUPT6HQ7KZ85 1726 aaKnown RBP10.96□□□□□ -0.65
LIMD1-204ENST00000474665 CAMSAP1Q5T5Y3 1602 aa10.95□□□□□ -0.66
LIMD1-204ENST00000474665 PREX2Q70Z35 1606 aa10.95□□□□□ -0.66
LIMD1-204ENST00000474665 C9orf84Q5VXU9 1444 aa10.94□□□□□ -0.66
LIMD1-204ENST00000474665 TRAPPC8Q9Y2L5 1435 aa10.94□□□□□ -0.66
LIMD1-204ENST00000474665 APLP2Q06481 763 aa10.94□□□□□ -0.66
LIMD1-204ENST00000474665 PPARGC1BQ86YN6 1023 aaKnown RBP10.94□□□□□ -0.66
LIMD1-204ENST00000474665 POTEAQ6S8J7 498 aa10.93□□□□□ -0.66
LIMD1-204ENST00000474665 CCNB3Q8WWL7 1395 aa10.92□□□□□ -0.66
LIMD1-204ENST00000474665 C3P01024 1663 aa10.92□□□□□ -0.66
LIMD1-204ENST00000474665 SCAPERQ9BY12 1400 aa10.92□□□□□ -0.66
LIMD1-204ENST00000474665 ZNF644Q9H582 1327 aaPredicted RBP10.91□□□□□ -0.66
LIMD1-204ENST00000474665 ARHGAP5Q13017 1502 aa10.91□□□□□ -0.66
LIMD1-204ENST00000474665 EFCAB2Q5VUJ9 269 aa10.91□□□□□ -0.66
LIMD1-204ENST00000474665 SAMD9LQ8IVG5 1584 aa10.9□□□□□ -0.66
LIMD1-204ENST00000474665 ESF1Q9H501 851 aaKnown RBP10.9□□□□□ -0.66
LIMD1-204ENST00000474665 PKD2Q13563 968 aa10.89□□□□□ -0.67
LIMD1-204ENST00000474665 CFDP1Q9UEE9 299 aaPredicted RBP10.89□□□□□ -0.67
LIMD1-204ENST00000474665 PPP6R1Q9UPN7 881 aa10.89□□□□□ -0.67
LIMD1-204ENST00000474665 MYOM3Q5VTT5 1437 aa10.89□□□□□ -0.67
LIMD1-204ENST00000474665 ITSN2Q9NZM3 1697 aa10.89□□□□□ -0.67
LIMD1-204ENST00000474665 CFAP74Q9C0B2 1584 aa10.88□□□□□ -0.67
LIMD1-204ENST00000474665 ABCC1P33527 1531 aa10.88□□□□□ -0.67
LIMD1-204ENST00000474665 MYT1LQ9UL68 1186 aa10.86□□□□□ -0.67
LIMD1-204ENST00000474665 ZNF777Q9ULD5 760 aaPredicted RBP10.86□□□□□ -0.67
LIMD1-204ENST00000474665 MBD5Q9P267 1494 aa10.86□□□□□ -0.67
LIMD1-204ENST00000474665 FGD6Q6ZV73 1430 aa10.85□□□□□ -0.67
LIMD1-204ENST00000474665 MIA2Q96PC5 1412 aa10.85□□□□□ -0.67
LIMD1-204ENST00000474665 KIAA1107Q9UPP5 1409 aa10.85□□□□□ -0.67
LIMD1-204ENST00000474665 SYCP2Q9BX26 1530 aa10.85□□□□□ -0.67
LIMD1-204ENST00000474665 HNRNPMP52272 730 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMD1-204ENST00000474665 AFAP1Q8N556 730 aa10.85□□□□□ -0.67
LIMD1-204ENST00000474665 ALKQ9UM73 1620 aa10.84□□□□□ -0.67
LIMD1-204ENST00000474665 CAMSAP2Q08AD1 1489 aa10.84□□□□□ -0.67
LIMD1-204ENST00000474665 KDM5CP41229 1560 aa10.83□□□□□ -0.68
LIMD1-204ENST00000474665 UPF1Q92900 1129 aaKnown RBP eCLIP10.83□□□□□ -0.68
LIMD1-204ENST00000474665 SETD1AO15047 1707 aaKnown RBP10.83□□□□□ -0.68
LIMD1-204ENST00000474665 PTPN23Q9H3S7 1636 aa10.83□□□□□ -0.68
LIMD1-204ENST00000474665 TCOF1Q13428 1488 aaKnown RBP10.82□□□□□ -0.68
LIMD1-204ENST00000474665 PTPRKQ15262 1439 aa10.82□□□□□ -0.68
LIMD1-204ENST00000474665 PLEKHH2Q8IVE3 1493 aa10.81□□□□□ -0.68
LIMD1-204ENST00000474665 PLA2R1Q13018 1463 aa10.81□□□□□ -0.68
LIMD1-204ENST00000474665 ZNF518AQ6AHZ1 1483 aa10.81□□□□□ -0.68
LIMD1-204ENST00000474665 CPS1P31327 1500 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms