RNA–Protein interactions for RNA: ENST00000474546.1

CCDC93-208, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 452 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-208ENST00000474546 PRXQ9BXM0 1461 aa11.43□□□□□ -0.58
CCDC93-208ENST00000474546 SETD1BQ9UPS6 1966 aaKnown RBP11.42□□□□□ -0.58
CCDC93-208ENST00000474546 ANP32EQ9BTT0 268 aa11.42□□□□□ -0.58
CCDC93-208ENST00000474546 MYT1LQ9UL68 1186 aa11.42□□□□□ -0.58
CCDC93-208ENST00000474546 POGZQ7Z3K3 1410 aa11.42□□□□□ -0.58
CCDC93-208ENST00000474546 TTC37Q6PGP7 1564 aa11.41□□□□□ -0.58
CCDC93-208ENST00000474546 RAPGEF2Q9Y4G8 1499 aa11.4□□□□□ -0.58
CCDC93-208ENST00000474546 TOM1O60784 492 aa11.4□□□□□ -0.58
CCDC93-208ENST00000474546 KDM5BQ9UGL1 1544 aa11.4□□□□□ -0.59
CCDC93-208ENST00000474546 NEFLP07196 543 aa11.39□□□□□ -0.59
CCDC93-208ENST00000474546 UHRF1BP1Q6BDS2 1440 aa11.38□□□□□ -0.59
CCDC93-208ENST00000474546 PIP4K2BP78356 416 aa11.38□□□□□ -0.59
CCDC93-208ENST00000474546 UPF1Q92900 1129 aaKnown RBP eCLIP11.38□□□□□ -0.59
CCDC93-208ENST00000474546 PHLDB1Q86UU1 1377 aa11.38□□□□□ -0.59
CCDC93-208ENST00000474546 CCNB3Q8WWL7 1395 aa11.38□□□□□ -0.59
CCDC93-208ENST00000474546 KIF27Q86VH2 1401 aa11.37□□□□□ -0.59
CCDC93-208ENST00000474546 FER1L4A9Z1Z3 1794 aa11.36□□□□□ -0.59
CCDC93-208ENST00000474546 SETD1AO15047 1707 aaKnown RBP11.36□□□□□ -0.59
CCDC93-208ENST00000474546 WDR7Q9Y4E6 1490 aa11.36□□□□□ -0.59
CCDC93-208ENST00000474546 CCER2I3L3R5 266 aa11.35□□□□□ -0.59
CCDC93-208ENST00000474546 ZCCHC11Q5TAX3 1644 aaKnown RBP11.35□□□□□ -0.59
CCDC93-208ENST00000474546 UACAQ9BZF9 1416 aa11.35□□□□□ -0.59
CCDC93-208ENST00000474546 POTEAQ6S8J7 498 aa11.34□□□□□ -0.59
CCDC93-208ENST00000474546 FANCAO15360 1455 aa11.33□□□□□ -0.6
CCDC93-208ENST00000474546 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.33□□□□□ -0.6
CCDC93-208ENST00000474546 ERICH6BQ5W0A0 696 aa11.33□□□□□ -0.6
CCDC93-208ENST00000474546 ZNF335Q9H4Z2 1342 aaPredicted RBP11.31□□□□□ -0.6
CCDC93-208ENST00000474546 CARMIL2Q6F5E8 1435 aa11.29□□□□□ -0.6
CCDC93-208ENST00000474546 TSHZ2Q9NRE2 1034 aa11.29□□□□□ -0.6
CCDC93-208ENST00000474546 ARHGEF40Q8TER5 1519 aa11.29□□□□□ -0.6
CCDC93-208ENST00000474546 NCOA1Q15788 1441 aa11.28□□□□□ -0.6
CCDC93-208ENST00000474546 RAPGEF3O95398 923 aa11.28□□□□□ -0.6
CCDC93-208ENST00000474546 KIAA0556O60303 1618 aa11.27□□□□□ -0.6
CCDC93-208ENST00000474546 SETD5Q9C0A6 1442 aa11.27□□□□□ -0.6
CCDC93-208ENST00000474546 TIAM1Q13009 1591 aa11.27□□□□□ -0.61
CCDC93-208ENST00000474546 FOXD1Q16676 465 aa11.25□□□□□ -0.61
CCDC93-208ENST00000474546 PTPRKQ15262 1439 aa11.23□□□□□ -0.61
CCDC93-208ENST00000474546 EFCAB5A4FU69 1503 aa11.22□□□□□ -0.61
CCDC93-208ENST00000474546 ANP32CO43423 234 aa11.22□□□□□ -0.61
CCDC93-208ENST00000474546 KCNH8Q96L42 1107 aa11.22□□□□□ -0.61
CCDC93-208ENST00000474546 FRMPD1Q5SYB0 1578 aa11.21□□□□□ -0.61
CCDC93-208ENST00000474546 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.61
CCDC93-208ENST00000474546 AKNAQ7Z591 1439 aa11.21□□□□□ -0.61
CCDC93-208ENST00000474546 RAB3GAP2Q9H2M9 1393 aa11.21□□□□□ -0.61
CCDC93-208ENST00000474546 CEBPAP49715 358 aaPredicted RBP11.2□□□□□ -0.62
CCDC93-208ENST00000474546 RBM33Q96EV2 1170 aaKnown RBP11.2□□□□□ -0.62
CCDC93-208ENST00000474546 NEO1Q92859 1461 aa11.19□□□□□ -0.62
CCDC93-208ENST00000474546 LRRC9Q6ZRR7 1453 aa11.19□□□□□ -0.62
CCDC93-208ENST00000474546 FANCIQ9NVI1 1328 aa11.18□□□□□ -0.62
CCDC93-208ENST00000474546 MLECQ14165 292 aa11.18□□□□□ -0.62
CCDC93-208ENST00000474546 ARHGEF12Q9NZN5 1544 aa11.18□□□□□ -0.62
CCDC93-208ENST00000474546 FYCO1Q9BQS8 1478 aa11.17□□□□□ -0.62
CCDC93-208ENST00000474546 CPS1P31327 1500 aa11.16□□□□□ -0.62
CCDC93-208ENST00000474546 ZRANB1Q9UGI0 708 aa11.16□□□□□ -0.62
CCDC93-208ENST00000474546 CAMSAP1Q5T5Y3 1602 aa11.15□□□□□ -0.62
CCDC93-208ENST00000474546 SIGLEC1Q9BZZ2 1709 aa11.15□□□□□ -0.63
CCDC93-208ENST00000474546 PKD2Q13563 968 aa11.13□□□□□ -0.63
CCDC93-208ENST00000474546 FKBP8Q14318 412 aa11.13□□□□□ -0.63
CCDC93-208ENST00000474546 KANK4Q5T7N3 995 aaPredicted RBP11.13□□□□□ -0.63
CCDC93-208ENST00000474546 ERICH6Q7L0X2 663 aa11.13□□□□□ -0.63
CCDC93-208ENST00000474546 CDK11AQ9UQ88 783 aaPredicted RBP11.13□□□□□ -0.63
CCDC93-208ENST00000474546 PPP1R15AO75807 674 aaPredicted RBP11.12□□□□□ -0.63
CCDC93-208ENST00000474546 BCL11AQ9H165 835 aa11.11□□□□□ -0.63
CCDC93-208ENST00000474546 RICTORQ6R327 1708 aa11.11□□□□□ -0.63
CCDC93-208ENST00000474546 ALKQ9UM73 1620 aa11.1□□□□□ -0.63
CCDC93-208ENST00000474546 RBM19Q9Y4C8 960 aaKnown RBP11.1□□□□□ -0.63
CCDC93-208ENST00000474546 TONSLQ96HA7 1378 aa11.1□□□□□ -0.63
CCDC93-208ENST00000474546 NCKAP5LQ9HCH0 1330 aa11.09□□□□□ -0.63
CCDC93-208ENST00000474546 FMN1Q68DA7 1419 aa11.09□□□□□ -0.63
CCDC93-208ENST00000474546 TRAPPC8Q9Y2L5 1435 aa11.09□□□□□ -0.63
CCDC93-208ENST00000474546 SENP3Q9H4L4 574 aaPredicted RBP11.09□□□□□ -0.63
CCDC93-208ENST00000474546 ZFYVE16Q7Z3T8 1539 aa11.09□□□□□ -0.63
CCDC93-208ENST00000474546 CASKIN1Q8WXD9 1431 aa11.09□□□□□ -0.63
CCDC93-208ENST00000474546 CCDC18Q5T9S5 1454 aa11.08□□□□□ -0.64
CCDC93-208ENST00000474546 MAGI2Q86UL8 1455 aa11.08□□□□□ -0.64
CCDC93-208ENST00000474546 ABCA9Q8IUA7 1624 aa11.08□□□□□ -0.64
CCDC93-208ENST00000474546 FHOD3Q2V2M9 1422 aa11.08□□□□□ -0.64
CCDC93-208ENST00000474546 DENND4BO75064 1496 aaPredicted RBP11.07□□□□□ -0.64
CCDC93-208ENST00000474546 PPP6R1Q9UPN7 881 aa11.07□□□□□ -0.64
CCDC93-208ENST00000474546 ZMYM4Q5VZL5 1548 aa11.07□□□□□ -0.64
CCDC93-208ENST00000474546 HFM1A2PYH4 1435 aa11.07□□□□□ -0.64
CCDC93-208ENST00000474546 C3P01024 1663 aa11.07□□□□□ -0.64
CCDC93-208ENST00000474546 CARMIL1Q5VZK9 1371 aa11.06□□□□□ -0.64
CCDC93-208ENST00000474546 SETBP1Q9Y6X0 1596 aa11.06□□□□□ -0.64
CCDC93-208ENST00000474546 PLA2R1Q13018 1463 aa11.06□□□□□ -0.64
CCDC93-208ENST00000474546 IGF1RP08069 1367 aa11.04□□□□□ -0.64
CCDC93-208ENST00000474546 DDX10Q13206 875 aaKnown RBP11.04□□□□□ -0.64
CCDC93-208ENST00000474546 TRIM52Q96A61 297 aa11.04□□□□□ -0.64
CCDC93-208ENST00000474546 SHANK2Q9UPX8 1470 aa11.03□□□□□ -0.64
CCDC93-208ENST00000474546 TCOF1Q13428 1488 aaKnown RBP11.02□□□□□ -0.65
CCDC93-208ENST00000474546 YY1P25490 414 aa11.02□□□□□ -0.65
CCDC93-208ENST00000474546 PPP4R2Q9NY27 417 aa11.02□□□□□ -0.65
CCDC93-208ENST00000474546 DISP1Q96F81 1524 aa11.02□□□□□ -0.65
CCDC93-208ENST00000474546 CTTNBP2Q8WZ74 1663 aa11.01□□□□□ -0.65
CCDC93-208ENST00000474546 SUPT6HQ7KZ85 1726 aaKnown RBP11.01□□□□□ -0.65
CCDC93-208ENST00000474546 FGD6Q6ZV73 1430 aa11.01□□□□□ -0.65
CCDC93-208ENST00000474546 CDK12Q9NYV4 1490 aaPredicted RBP11□□□□□ -0.65
CCDC93-208ENST00000474546 IQGAP2Q13576 1575 aa11□□□□□ -0.65
CCDC93-208ENST00000474546 LRP5O75197 1615 aa11□□□□□ -0.65
CCDC93-208ENST00000474546 PCDH10Q9P2E7 1040 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms