RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 ARHGEF12Q9NZN5 1544 aa31.15■■■□□ 2.58
SHH-205ENST00000472308 SCAPERQ9BY12 1400 aa31.15■■■□□ 2.58
SHH-205ENST00000472308 PLCH2O75038 1416 aa31.13■■■□□ 2.57
SHH-205ENST00000472308 EEA1Q15075 1411 aa31.12■■■□□ 2.57
SHH-205ENST00000472308 ATP10AO60312 1499 aa31.08■■■□□ 2.57
SHH-205ENST00000472308 PREX1Q8TCU6 1659 aa31.07■■■□□ 2.56
SHH-205ENST00000472308 C9orf84Q5VXU9 1444 aa31.07■■■□□ 2.56
SHH-205ENST00000472308 CEBPAP49715 358 aaPredicted RBP31.01■■■□□ 2.55
SHH-205ENST00000472308 STRCQ7RTU9 1775 aa30.99■■■□□ 2.55
SHH-205ENST00000472308 MYO5CQ9NQX4 1742 aa30.98■■■□□ 2.55
SHH-205ENST00000472308 KDM5CP41229 1560 aa30.94■■■□□ 2.54
SHH-205ENST00000472308 EFCAB2Q5VUJ9 269 aa30.94■■■□□ 2.54
SHH-205ENST00000472308 KIF14Q15058 1648 aa30.94■■■□□ 2.54
SHH-205ENST00000472308 ZNF518AQ6AHZ1 1483 aa30.93■■■□□ 2.54
SHH-205ENST00000472308 ILDR2Q71H61 639 aa30.92■■■□□ 2.54
SHH-205ENST00000472308 DISP3Q9P2K9 1392 aa30.9■■■□□ 2.54
SHH-205ENST00000472308 UHRF1BP1Q6BDS2 1440 aa30.9■■■□□ 2.54
SHH-205ENST00000472308 DIP2CQ9Y2E4 1556 aa30.88■■■□□ 2.53
SHH-205ENST00000472308 AFAP1Q8N556 730 aa30.87■■■□□ 2.53
SHH-205ENST00000472308 DMRT2Q9Y5R5 561 aa30.87■■■□□ 2.53
SHH-205ENST00000472308 REREQ9P2R6 1566 aa30.85■■■□□ 2.53
SHH-205ENST00000472308 ARHGAP5Q13017 1502 aa30.85■■■□□ 2.53
SHH-205ENST00000472308 FMN1Q68DA7 1419 aa30.85■■■□□ 2.53
SHH-205ENST00000472308 ARHGAP35Q9NRY4 1499 aa30.82■■■□□ 2.53
SHH-205ENST00000472308 TROQ12816 1431 aaPredicted RBP30.82■■■□□ 2.52
SHH-205ENST00000472308 ATP1B4Q9UN42 357 aaPredicted RBP30.82■■■□□ 2.52
SHH-205ENST00000472308 ABCA6Q8N139 1617 aa30.81■■■□□ 2.52
SHH-205ENST00000472308 C3P01024 1663 aa30.8■■■□□ 2.52
SHH-205ENST00000472308 CDK11AQ9UQ88 783 aaPredicted RBP30.79■■■□□ 2.52
SHH-205ENST00000472308 PTPRTO14522 1441 aa30.79■■■□□ 2.52
SHH-205ENST00000472308 SETD1BQ9UPS6 1966 aaKnown RBP30.79■■■□□ 2.52
SHH-205ENST00000472308 SOCS7O14512 581 aa30.78■■■□□ 2.52
SHH-205ENST00000472308 MLH3Q9UHC1 1453 aa30.76■■■□□ 2.52
SHH-205ENST00000472308 LTBP4Q8N2S1 1624 aa30.74■■■□□ 2.51
SHH-205ENST00000472308 LRRIQ1Q96JM4 1722 aa30.74■■■□□ 2.51
SHH-205ENST00000472308 AGLP35573 1532 aa30.73■■■□□ 2.51
SHH-205ENST00000472308 CDC42BPBQ9Y5S2 1711 aa30.73■■■□□ 2.51
SHH-205ENST00000472308 SPATA31D1Q6ZQQ2 1576 aa30.72■■■□□ 2.51
SHH-205ENST00000472308 CLIP1P30622 1438 aa30.72■■■□□ 2.51
SHH-205ENST00000472308 TRAPPC8Q9Y2L5 1435 aa30.71■■■□□ 2.51
SHH-205ENST00000472308 ABCC1P33527 1531 aa30.7■■■□□ 2.51
SHH-205ENST00000472308 MYT1LQ9UL68 1186 aa30.7■■■□□ 2.51
SHH-205ENST00000472308 EHMT2Q96KQ7 1210 aa30.69■■■□□ 2.5
SHH-205ENST00000472308 PREX2Q70Z35 1606 aa30.67■■■□□ 2.5
SHH-205ENST00000472308 UBTFP17480 764 aaKnown RBP30.67■■■□□ 2.5
SHH-205ENST00000472308 NCOA1Q15788 1441 aa30.66■■■□□ 2.5
SHH-205ENST00000472308 ITSN2Q9NZM3 1697 aa30.65■■■□□ 2.5
SHH-205ENST00000472308 IQSEC2Q5JU85 1478 aa30.63■■■□□ 2.49
SHH-205ENST00000472308 KIDINS220Q9ULH0 1771 aa30.62■■■□□ 2.49
SHH-205ENST00000472308 CNTLNQ9NXG0 1405 aa30.59■■■□□ 2.49
SHH-205ENST00000472308 ESF1Q9H501 851 aaKnown RBP30.58■■■□□ 2.49
SHH-205ENST00000472308 CAMSAP1Q5T5Y3 1602 aa30.55■■■□□ 2.48
SHH-205ENST00000472308 NPATQ14207 1427 aa30.53■■■□□ 2.48
SHH-205ENST00000472308 CDC42BPAQ5VT25 1732 aa30.52■■■□□ 2.48
SHH-205ENST00000472308 MROH2AA6NES4 1674 aa30.52■■■□□ 2.48
SHH-205ENST00000472308 SAMD9LQ8IVG5 1584 aa30.51■■■□□ 2.47
SHH-205ENST00000472308 CCDC18Q5T9S5 1454 aa30.5■■■□□ 2.47
SHH-205ENST00000472308 CASKIN1Q8WXD9 1431 aa30.49■■■□□ 2.47
SHH-205ENST00000472308 ZMYM3Q14202 1370 aa30.45■■■□□ 2.47
SHH-205ENST00000472308 ZNF335Q9H4Z2 1342 aaPredicted RBP30.44■■■□□ 2.46
SHH-205ENST00000472308 SYCP2Q9BX26 1530 aa30.43■■■□□ 2.46
SHH-205ENST00000472308 NCKAP5LQ9HCH0 1330 aa30.43■■■□□ 2.46
SHH-205ENST00000472308 MYO3AQ8NEV4 1616 aa30.4■■■□□ 2.46
SHH-205ENST00000472308 ZNF142P52746 1687 aaPredicted RBP30.4■■■□□ 2.46
SHH-205ENST00000472308 SUPT6HQ7KZ85 1726 aaKnown RBP30.39■■■□□ 2.46
SHH-205ENST00000472308 PLXNC1O60486 1568 aa30.39■■■□□ 2.46
SHH-205ENST00000472308 CLTCQ00610 1675 aaKnown RBP30.38■■■□□ 2.45
SHH-205ENST00000472308 PLA2R1Q13018 1463 aa30.38■■■□□ 2.45
SHH-205ENST00000472308 SPAG9O60271 1321 aaKnown RBP30.37■■■□□ 2.45
SHH-205ENST00000472308 TCOF1Q13428 1488 aaKnown RBP30.37■■■□□ 2.45
SHH-205ENST00000472308 GPATCH8Q9UKJ3 1502 aaKnown RBP30.37■■■□□ 2.45
SHH-205ENST00000472308 ZNF777Q9ULD5 760 aaPredicted RBP30.36■■■□□ 2.45
SHH-205ENST00000472308 ATP7AQ04656 1500 aa30.36■■■□□ 2.45
SHH-205ENST00000472308 PTPRKQ15262 1439 aa30.35■■■□□ 2.45
SHH-205ENST00000472308 INO80Q9ULG1 1556 aaPredicted RBP30.35■■■□□ 2.45
SHH-205ENST00000472308 CEP170BQ9Y4F5 1589 aaPredicted RBP30.35■■■□□ 2.45
SHH-205ENST00000472308 UBAP1LF5GYI3 381 aa30.34■■■□□ 2.45
SHH-205ENST00000472308 FYCO1Q9BQS8 1478 aa30.33■■■□□ 2.45
SHH-205ENST00000472308 HNRNPMP52272 730 aaKnown RBP eCLIP30.32■■■□□ 2.44
SHH-205ENST00000472308 A2MP01023 1474 aa30.31■■■□□ 2.44
SHH-205ENST00000472308 PKD2Q13563 968 aa30.3■■■□□ 2.44
SHH-205ENST00000472308 KIAA1107Q9UPP5 1409 aa30.29■■■□□ 2.44
SHH-205ENST00000472308 PLEKHH2Q8IVE3 1493 aa30.23■■■□□ 2.43
SHH-205ENST00000472308 CHIC1Q5VXU3 224 aa30.21■■■□□ 2.43
SHH-205ENST00000472308 GGT6Q6P531 493 aa30.21■■■□□ 2.43
SHH-205ENST00000472308 PPP6R1Q9UPN7 881 aa30.2■■■□□ 2.43
SHH-205ENST00000472308 CFDP1Q9UEE9 299 aaPredicted RBP30.19■■■□□ 2.42
SHH-205ENST00000472308 A2ML1A8K2U0 1454 aa30.18■■■□□ 2.42
SHH-205ENST00000472308 DNMT1P26358 1616 aaKnown RBP30.18■■■□□ 2.42
SHH-205ENST00000472308 ADGBQ8N7X0 1667 aa30.16■■■□□ 2.42
SHH-205ENST00000472308 CCNB3Q8WWL7 1395 aa30.15■■■□□ 2.42
SHH-205ENST00000472308 NEURL4Q96JN8 1562 aa30.13■■■□□ 2.41
SHH-205ENST00000472308 MED1Q15648 1581 aaPredicted RBP30.11■■■□□ 2.41
SHH-205ENST00000472308 HSPA1LP34931 641 aa30.1■■■□□ 2.41
SHH-205ENST00000472308 MBD5Q9P267 1494 aa30.1■■■□□ 2.41
SHH-205ENST00000472308 ZNF644Q9H582 1327 aaPredicted RBP30.09■■■□□ 2.41
SHH-205ENST00000472308 POLR1AO95602 1720 aaPredicted RBP30.08■■■□□ 2.41
SHH-205ENST00000472308 TIAM1Q13009 1591 aa30.07■■■□□ 2.4
SHH-205ENST00000472308 CPS1P31327 1500 aa30.06■■■□□ 2.4
SHH-205ENST00000472308 PIP4K2BP78356 416 aa30.04■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms