RNA–Protein interactions for RNA: ENST00000469154.5

SMARCD3-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 5

Gene SMARCD3, Length 2,415 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-205ENST00000469154 KDM5BQ9UGL1 1544 aa20.19■□□□□ 0.82
SMARCD3-205ENST00000469154 NCOA2Q15596 1464 aa20.19■□□□□ 0.82
SMARCD3-205ENST00000469154 MYOM3Q5VTT5 1437 aa20.18■□□□□ 0.82
SMARCD3-205ENST00000469154 PPP1R15AO75807 674 aaPredicted RBP20.17■□□□□ 0.82
SMARCD3-205ENST00000469154 ZCCHC11Q5TAX3 1644 aaKnown RBP20.17■□□□□ 0.82
SMARCD3-205ENST00000469154 NPM1P06748 294 aaKnown RBP eCLIP20.14■□□□□ 0.81
SMARCD3-205ENST00000469154 DDX10Q13206 875 aaKnown RBP20.14■□□□□ 0.81
SMARCD3-205ENST00000469154 PTPRKQ15262 1439 aa20.12■□□□□ 0.81
SMARCD3-205ENST00000469154 TONSLQ96HA7 1378 aa20.12■□□□□ 0.81
SMARCD3-205ENST00000469154 KCNH8Q96L42 1107 aa20.11■□□□□ 0.81
SMARCD3-205ENST00000469154 KIF14Q15058 1648 aa20.11■□□□□ 0.81
SMARCD3-205ENST00000469154 NAIPQ13075 1403 aa20.11■□□□□ 0.81
SMARCD3-205ENST00000469154 GCC2Q8IWJ2 1684 aa20.1■□□□□ 0.81
SMARCD3-205ENST00000469154 CCER2I3L3R5 266 aa20.07■□□□□ 0.8
SMARCD3-205ENST00000469154 TCOF1Q13428 1488 aaKnown RBP20.06■□□□□ 0.8
SMARCD3-205ENST00000469154 ASXL2Q76L83 1435 aa20.05■□□□□ 0.8
SMARCD3-205ENST00000469154 WDR7Q9Y4E6 1490 aa20.03■□□□□ 0.8
SMARCD3-205ENST00000469154 ABCC10Q5T3U5 1492 aa20.02■□□□□ 0.8
SMARCD3-205ENST00000469154 AKNAQ7Z591 1439 aa20.02■□□□□ 0.79
SMARCD3-205ENST00000469154 ANP32CO43423 234 aa20.02■□□□□ 0.79
SMARCD3-205ENST00000469154 GPATCH8Q9UKJ3 1502 aaKnown RBP20.01■□□□□ 0.79
SMARCD3-205ENST00000469154 CFDP1Q9UEE9 299 aaPredicted RBP20■□□□□ 0.79
SMARCD3-205ENST00000469154 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.98■□□□□ 0.79
SMARCD3-205ENST00000469154 MIA2Q96PC5 1412 aa19.97■□□□□ 0.79
SMARCD3-205ENST00000469154 ZNF777Q9ULD5 760 aaPredicted RBP19.97■□□□□ 0.79
SMARCD3-205ENST00000469154 TTC37Q6PGP7 1564 aa19.97■□□□□ 0.79
SMARCD3-205ENST00000469154 ZNF644Q9H582 1327 aaPredicted RBP19.96■□□□□ 0.79
SMARCD3-205ENST00000469154 HIRIP3Q9BW71 556 aaPredicted RBP19.96■□□□□ 0.79
SMARCD3-205ENST00000469154 DNAJC5Q9H3Z4 198 aa19.94■□□□□ 0.78
SMARCD3-205ENST00000469154 CDC42BPAQ5VT25 1732 aa19.93■□□□□ 0.78
SMARCD3-205ENST00000469154 ITSN2Q9NZM3 1697 aa19.93■□□□□ 0.78
SMARCD3-205ENST00000469154 TSHZ2Q9NRE2 1034 aa19.91■□□□□ 0.78
SMARCD3-205ENST00000469154 KDM6BO15054 1643 aa19.88■□□□□ 0.77
SMARCD3-205ENST00000469154 PREX2Q70Z35 1606 aa19.88■□□□□ 0.77
SMARCD3-205ENST00000469154 DENND4BO75064 1496 aaPredicted RBP19.87■□□□□ 0.77
SMARCD3-205ENST00000469154 CAMSAP2Q08AD1 1489 aa19.87■□□□□ 0.77
SMARCD3-205ENST00000469154 PLCH2O75038 1416 aa19.87■□□□□ 0.77
SMARCD3-205ENST00000469154 ARHGAP5Q13017 1502 aa19.87■□□□□ 0.77
SMARCD3-205ENST00000469154 CDC42BPBQ9Y5S2 1711 aa19.87■□□□□ 0.77
SMARCD3-205ENST00000469154 FKBP8Q14318 412 aa19.86■□□□□ 0.77
SMARCD3-205ENST00000469154 RRP7BPQ9NSQ0 103 aa19.86■□□□□ 0.77
SMARCD3-205ENST00000469154 MYO5CQ9NQX4 1742 aa19.86■□□□□ 0.77
SMARCD3-205ENST00000469154 NEFLP07196 543 aa19.86■□□□□ 0.77
SMARCD3-205ENST00000469154 ABCA9Q8IUA7 1624 aa19.85■□□□□ 0.77
SMARCD3-205ENST00000469154 EFCAB2Q5VUJ9 269 aa19.83■□□□□ 0.76
SMARCD3-205ENST00000469154 DNMT1P26358 1616 aaKnown RBP19.82■□□□□ 0.76
SMARCD3-205ENST00000469154 CHIC2Q9UKJ5 165 aa19.82■□□□□ 0.76
SMARCD3-205ENST00000469154 HNRNPMP52272 730 aaKnown RBP eCLIP19.82■□□□□ 0.76
SMARCD3-205ENST00000469154 TRIM52Q96A61 297 aa19.81■□□□□ 0.76
SMARCD3-205ENST00000469154 CD109Q6YHK3 1445 aa19.81■□□□□ 0.76
SMARCD3-205ENST00000469154 SAMD9LQ8IVG5 1584 aa19.8■□□□□ 0.76
SMARCD3-205ENST00000469154 ROCK1Q13464 1354 aa19.8■□□□□ 0.76
SMARCD3-205ENST00000469154 FAM69CQ0P6D2 419 aa19.8■□□□□ 0.76
SMARCD3-205ENST00000469154 BCANQ96GW7 911 aa19.79■□□□□ 0.76
SMARCD3-205ENST00000469154 ABCC5O15440 1437 aa19.79■□□□□ 0.76
SMARCD3-205ENST00000469154 DAPK1P53355 1430 aa19.79■□□□□ 0.76
SMARCD3-205ENST00000469154 HSPA5P11021 654 aaKnown RBP19.77■□□□□ 0.76
SMARCD3-205ENST00000469154 MPHOSPH9Q99550 1183 aa19.77■□□□□ 0.76
SMARCD3-205ENST00000469154 FANCAO15360 1455 aa19.77■□□□□ 0.75
SMARCD3-205ENST00000469154 ARAP3Q8WWN8 1544 aa19.76■□□□□ 0.75
SMARCD3-205ENST00000469154 POLR1AO95602 1720 aaPredicted RBP19.75■□□□□ 0.75
SMARCD3-205ENST00000469154 EIF4G2P78344 907 aaKnown RBP eCLIP19.74■□□□□ 0.75
SMARCD3-205ENST00000469154 MBD5Q9P267 1494 aa19.74■□□□□ 0.75
SMARCD3-205ENST00000469154 SYCP2Q9BX26 1530 aa19.74■□□□□ 0.75
SMARCD3-205ENST00000469154 DIP2BQ9P265 1576 aa19.74■□□□□ 0.75
SMARCD3-205ENST00000469154 WASHC2AQ641Q2 1341 aa19.74■□□□□ 0.75
SMARCD3-205ENST00000469154 CNTLNQ9NXG0 1405 aa19.73■□□□□ 0.75
SMARCD3-205ENST00000469154 PLEKHH2Q8IVE3 1493 aa19.72■□□□□ 0.75
SMARCD3-205ENST00000469154 RPRD2Q5VT52 1461 aaKnown RBP19.72■□□□□ 0.75
SMARCD3-205ENST00000469154 GLI2P10070 1586 aa19.72■□□□□ 0.75
SMARCD3-205ENST00000469154 KIAA1107Q9UPP5 1409 aa19.72■□□□□ 0.75
SMARCD3-205ENST00000469154 ARHGEF12Q9NZN5 1544 aa19.72■□□□□ 0.75
SMARCD3-205ENST00000469154 ADGBQ8N7X0 1667 aa19.71■□□□□ 0.75
SMARCD3-205ENST00000469154 TSPY4P0CV99 314 aa19.71■□□□□ 0.75
SMARCD3-205ENST00000469154 TSPY10P0CW01 314 aa19.71■□□□□ 0.75
SMARCD3-205ENST00000469154 RSPH4AQ5TD94 716 aa19.7■□□□□ 0.74
SMARCD3-205ENST00000469154 ABCC1P33527 1531 aa19.69■□□□□ 0.74
SMARCD3-205ENST00000469154 ANKRD30BQ9BXX2 1392 aa19.69■□□□□ 0.74
SMARCD3-205ENST00000469154 MAP3K4Q9Y6R4 1608 aa19.69■□□□□ 0.74
SMARCD3-205ENST00000469154 ARHGEF5Q12774 1597 aa19.69■□□□□ 0.74
SMARCD3-205ENST00000469154 CCDC141Q6ZP82 1450 aa19.69■□□□□ 0.74
SMARCD3-205ENST00000469154 TEX14Q8IWB6 1497 aa19.69■□□□□ 0.74
SMARCD3-205ENST00000469154 NCOA1Q15788 1441 aa19.68■□□□□ 0.74
SMARCD3-205ENST00000469154 L3MBTL2Q969R5 705 aa19.68■□□□□ 0.74
SMARCD3-205ENST00000469154 ADGRL1O94910 1474 aa19.67■□□□□ 0.74
SMARCD3-205ENST00000469154 C9orf84Q5VXU9 1444 aa19.67■□□□□ 0.74
SMARCD3-205ENST00000469154 TRAPPC8Q9Y2L5 1435 aa19.67■□□□□ 0.74
SMARCD3-205ENST00000469154 AFAP1Q8N556 730 aa19.66■□□□□ 0.74
SMARCD3-205ENST00000469154 SCAPERQ9BY12 1400 aa19.66■□□□□ 0.74
SMARCD3-205ENST00000469154 HNRNPUQ00839 825 aaKnown RBP eCLIP19.65■□□□□ 0.74
SMARCD3-205ENST00000469154 CROCC2H7BZ55 1655 aa19.65■□□□□ 0.74
SMARCD3-205ENST00000469154 CCDC7Q96M83 1385 aa19.65■□□□□ 0.74
SMARCD3-205ENST00000469154 SHANK2Q9UPX8 1470 aa19.63■□□□□ 0.73
SMARCD3-205ENST00000469154 KIF13AQ9H1H9 1805 aa19.63■□□□□ 0.73
SMARCD3-205ENST00000469154 ANKRD30AQ9BXX3 1397 aa19.62■□□□□ 0.73
SMARCD3-205ENST00000469154 TSPOAP1O95153 1857 aa19.62■□□□□ 0.73
SMARCD3-205ENST00000469154 NEO1Q92859 1461 aa19.62■□□□□ 0.73
SMARCD3-205ENST00000469154 CFAP74Q9C0B2 1584 aa19.61■□□□□ 0.73
SMARCD3-205ENST00000469154 ADGRL2O95490 1459 aa19.61■□□□□ 0.73
SMARCD3-205ENST00000469154 FOXD1Q16676 465 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms