RNA–Protein interactions for RNA: ENST00000467852.1

VPS26A-204, Transcript of VPS26, retromer complex component A, humanhuman

TSL 3

Gene VPS26A, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-204ENST00000467852 RAPGEF2Q9Y4G8 1499 aa20.74■□□□□ 0.91
VPS26A-204ENST00000467852 SIGLEC1Q9BZZ2 1709 aa20.73■□□□□ 0.91
VPS26A-204ENST00000467852 FHOD3Q2V2M9 1422 aa20.72■□□□□ 0.91
VPS26A-204ENST00000467852 ATP10BO94823 1461 aa20.72■□□□□ 0.91
VPS26A-204ENST00000467852 EFCAB5A4FU69 1503 aa20.71■□□□□ 0.91
VPS26A-204ENST00000467852 MED1Q15648 1581 aaPredicted RBP20.71■□□□□ 0.91
VPS26A-204ENST00000467852 ZFYVE16Q7Z3T8 1539 aa20.7■□□□□ 0.9
VPS26A-204ENST00000467852 ARHGEF12Q9NZN5 1544 aa20.66■□□□□ 0.9
VPS26A-204ENST00000467852 ZMYM4Q5VZL5 1548 aa20.65■□□□□ 0.9
VPS26A-204ENST00000467852 MAGI2Q86UL8 1455 aa20.65■□□□□ 0.9
VPS26A-204ENST00000467852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.63■□□□□ 0.89
VPS26A-204ENST00000467852 HNRNPUL2Q1KMD3 747 aaKnown RBP20.63■□□□□ 0.89
VPS26A-204ENST00000467852 CTTNBP2Q8WZ74 1663 aa20.63■□□□□ 0.89
VPS26A-204ENST00000467852 CFAP74Q9C0B2 1584 aa20.61■□□□□ 0.89
VPS26A-204ENST00000467852 HSPA1LP34931 641 aa20.59■□□□□ 0.89
VPS26A-204ENST00000467852 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
VPS26A-204ENST00000467852 HECW1Q76N89 1606 aa20.56■□□□□ 0.88
VPS26A-204ENST00000467852 ATP10AO60312 1499 aa20.55■□□□□ 0.88
VPS26A-204ENST00000467852 NCOA1Q15788 1441 aa20.54■□□□□ 0.88
VPS26A-204ENST00000467852 C9orf84Q5VXU9 1444 aa20.53■□□□□ 0.88
VPS26A-204ENST00000467852 ZNF335Q9H4Z2 1342 aaPredicted RBP20.53■□□□□ 0.88
VPS26A-204ENST00000467852 PIP4K2BP78356 416 aa20.5■□□□□ 0.87
VPS26A-204ENST00000467852 P3H3Q8IVL6 736 aa20.49■□□□□ 0.87
VPS26A-204ENST00000467852 ESF1Q9H501 851 aaKnown RBP20.47■□□□□ 0.87
VPS26A-204ENST00000467852 TRAPPC8Q9Y2L5 1435 aa20.46■□□□□ 0.87
VPS26A-204ENST00000467852 C3P01024 1663 aa20.46■□□□□ 0.87
VPS26A-204ENST00000467852 PLEKHD1A6NEE1 506 aa20.46■□□□□ 0.87
VPS26A-204ENST00000467852 TOM1O60784 492 aa20.46■□□□□ 0.87
VPS26A-204ENST00000467852 CAMSAP1Q5T5Y3 1602 aa20.44■□□□□ 0.86
VPS26A-204ENST00000467852 RAPGEF6Q8TEU7 1601 aa20.44■□□□□ 0.86
VPS26A-204ENST00000467852 SCAPERQ9BY12 1400 aa20.44■□□□□ 0.86
VPS26A-204ENST00000467852 NCKAP5LQ9HCH0 1330 aa20.42■□□□□ 0.86
VPS26A-204ENST00000467852 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.39■□□□□ 0.85
VPS26A-204ENST00000467852 PKD2Q13563 968 aa20.37■□□□□ 0.85
VPS26A-204ENST00000467852 MYT1LQ9UL68 1186 aa20.35■□□□□ 0.85
VPS26A-204ENST00000467852 NUP153P49790 1475 aaKnown RBP20.32■□□□□ 0.84
VPS26A-204ENST00000467852 PLCH2O75038 1416 aa20.28■□□□□ 0.84
VPS26A-204ENST00000467852 CNTLNQ9NXG0 1405 aa20.27■□□□□ 0.84
VPS26A-204ENST00000467852 SUPT6HQ7KZ85 1726 aaKnown RBP20.27■□□□□ 0.84
VPS26A-204ENST00000467852 PLA2R1Q13018 1463 aa20.26■□□□□ 0.83
VPS26A-204ENST00000467852 EFCAB2Q5VUJ9 269 aa20.26■□□□□ 0.83
VPS26A-204ENST00000467852 RGS17Q9UGC6 210 aaPredicted RBP20.26■□□□□ 0.83
VPS26A-204ENST00000467852 NPATQ14207 1427 aa20.26■□□□□ 0.83
VPS26A-204ENST00000467852 ZNF518AQ6AHZ1 1483 aa20.25■□□□□ 0.83
VPS26A-204ENST00000467852 AGLP35573 1532 aa20.25■□□□□ 0.83
VPS26A-204ENST00000467852 PTPRKQ15262 1439 aa20.24■□□□□ 0.83
VPS26A-204ENST00000467852 REREQ9P2R6 1566 aa20.24■□□□□ 0.83
VPS26A-204ENST00000467852 CPS1P31327 1500 aa20.23■□□□□ 0.83
VPS26A-204ENST00000467852 AFAP1Q8N556 730 aa20.22■□□□□ 0.83
VPS26A-204ENST00000467852 TCOF1Q13428 1488 aaKnown RBP20.22■□□□□ 0.83
VPS26A-204ENST00000467852 SAMD9Q5K651 1589 aa20.21■□□□□ 0.83
VPS26A-204ENST00000467852 DIP2CQ9Y2E4 1556 aa20.21■□□□□ 0.83
VPS26A-204ENST00000467852 KDM5CP41229 1560 aa20.17■□□□□ 0.82
VPS26A-204ENST00000467852 ZNF142P52746 1687 aaPredicted RBP20.16■□□□□ 0.82
VPS26A-204ENST00000467852 ZMYM3Q14202 1370 aa20.16■□□□□ 0.82
VPS26A-204ENST00000467852 PRXQ9BXM0 1461 aa20.16■□□□□ 0.82
VPS26A-204ENST00000467852 MROH2AA6NES4 1674 aa20.16■□□□□ 0.82
VPS26A-204ENST00000467852 MYO5CQ9NQX4 1742 aa20.16■□□□□ 0.82
VPS26A-204ENST00000467852 SHANK2Q9UPX8 1470 aa20.14■□□□□ 0.81
VPS26A-204ENST00000467852 ABCA6Q8N139 1617 aa20.13■□□□□ 0.81
VPS26A-204ENST00000467852 CEP170BQ9Y4F5 1589 aaPredicted RBP20.12■□□□□ 0.81
VPS26A-204ENST00000467852 POTEAQ6S8J7 498 aa20.12■□□□□ 0.81
VPS26A-204ENST00000467852 MYO3AQ8NEV4 1616 aa20.12■□□□□ 0.81
VPS26A-204ENST00000467852 MLH3Q9UHC1 1453 aa20.11■□□□□ 0.81
VPS26A-204ENST00000467852 ALKQ9UM73 1620 aa20.09■□□□□ 0.81
VPS26A-204ENST00000467852 ARHGAP5Q13017 1502 aa20.05■□□□□ 0.8
VPS26A-204ENST00000467852 RANGAP1P46060 587 aaPredicted RBP20.04■□□□□ 0.8
VPS26A-204ENST00000467852 POLR1AO95602 1720 aaPredicted RBP20.03■□□□□ 0.8
VPS26A-204ENST00000467852 SETD1AO15047 1707 aaKnown RBP20.02■□□□□ 0.79
VPS26A-204ENST00000467852 CDK13Q14004 1512 aaKnown RBP20.01■□□□□ 0.79
VPS26A-204ENST00000467852 CLTCQ00610 1675 aaKnown RBP20■□□□□ 0.79
VPS26A-204ENST00000467852 A2ML1A8K2U0 1454 aa19.99■□□□□ 0.79
VPS26A-204ENST00000467852 DNMT1P26358 1616 aaKnown RBP19.98■□□□□ 0.79
VPS26A-204ENST00000467852 CDK11AQ9UQ88 783 aaPredicted RBP19.97■□□□□ 0.79
VPS26A-204ENST00000467852 VWDEQ8N2E2 1590 aa19.96■□□□□ 0.79
VPS26A-204ENST00000467852 KIDINS220Q9ULH0 1771 aa19.96■□□□□ 0.79
VPS26A-204ENST00000467852 UPF1Q92900 1129 aaKnown RBP eCLIP19.96■□□□□ 0.79
VPS26A-204ENST00000467852 NEURL4Q96JN8 1562 aa19.95■□□□□ 0.78
VPS26A-204ENST00000467852 ANKLE2Q86XL3 938 aa19.95■□□□□ 0.78
VPS26A-204ENST00000467852 RNF17Q9BXT8 1623 aaKnown RBP19.93■□□□□ 0.78
VPS26A-204ENST00000467852 KIF14Q15058 1648 aa19.91■□□□□ 0.78
VPS26A-204ENST00000467852 ATP1B4Q9UN42 357 aaPredicted RBP19.91■□□□□ 0.78
VPS26A-204ENST00000467852 LRRC7Q96NW7 1537 aa19.89■□□□□ 0.77
VPS26A-204ENST00000467852 CDC42BPBQ9Y5S2 1711 aa19.88■□□□□ 0.77
VPS26A-204ENST00000467852 ITSN2Q9NZM3 1697 aa19.88■□□□□ 0.77
VPS26A-204ENST00000467852 SRCAPQ6ZRS2 3230 aa19.87■□□□□ 0.77
VPS26A-204ENST00000467852 GGT6Q6P531 493 aa19.87■□□□□ 0.77
VPS26A-204ENST00000467852 ABCC1P33527 1531 aa19.86■□□□□ 0.77
VPS26A-204ENST00000467852 NPHP4O75161 1426 aaPredicted RBP19.85■□□□□ 0.77
VPS26A-204ENST00000467852 THEMISQ8N1K5 641 aaPredicted RBP19.84■□□□□ 0.77
VPS26A-204ENST00000467852 CLIP1P30622 1438 aa19.84■□□□□ 0.77
VPS26A-204ENST00000467852 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.83■□□□□ 0.779e-8■□□□□ 9.9
VPS26A-204ENST00000467852 SYNMO15061 1565 aa19.83■□□□□ 0.77
VPS26A-204ENST00000467852 STRCP1A6NGW2 1772 aa19.83■□□□□ 0.77
VPS26A-204ENST00000467852 MED14O60244 1454 aa19.82■□□□□ 0.76
VPS26A-204ENST00000467852 TROQ12816 1431 aaPredicted RBP19.82■□□□□ 0.76
VPS26A-204ENST00000467852 DEPDC5O75140 1603 aa19.8■□□□□ 0.76
VPS26A-204ENST00000467852 SPAG9O60271 1321 aaKnown RBP19.79■□□□□ 0.76
VPS26A-204ENST00000467852 IQGAP1P46940 1657 aa19.79■□□□□ 0.76
VPS26A-204ENST00000467852 TNRQ92752 1358 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms