RNA–Protein interactions for RNA: ENST00000466969.1

UBR4-210, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-210ENST00000466969 HSPA1LP34931 641 aa22.48■■□□□ 1.19
UBR4-210ENST00000466969 ZMYM4Q5VZL5 1548 aa22.47■■□□□ 1.19
UBR4-210ENST00000466969 SCAF1Q9H7N4 1312 aaKnown RBP22.47■■□□□ 1.19
UBR4-210ENST00000466969 MAGI2Q86UL8 1455 aa22.47■■□□□ 1.19
UBR4-210ENST00000466969 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.43■■□□□ 1.18
UBR4-210ENST00000466969 HNRNPUL2Q1KMD3 747 aaKnown RBP22.43■■□□□ 1.18
UBR4-210ENST00000466969 ZNF335Q9H4Z2 1342 aaPredicted RBP22.41■■□□□ 1.18
UBR4-210ENST00000466969 NCOA1Q15788 1441 aa22.4■■□□□ 1.18
UBR4-210ENST00000466969 CFAP74Q9C0B2 1584 aa22.39■■□□□ 1.18
UBR4-210ENST00000466969 PIP4K2BP78356 416 aa22.38■■□□□ 1.17
UBR4-210ENST00000466969 HECW1Q76N89 1606 aa22.35■■□□□ 1.17
UBR4-210ENST00000466969 C9orf84Q5VXU9 1444 aa22.35■■□□□ 1.17
UBR4-210ENST00000466969 ATP10AO60312 1499 aa22.34■■□□□ 1.17
UBR4-210ENST00000466969 CTTNBP2Q8WZ74 1663 aa22.33■■□□□ 1.17
UBR4-210ENST00000466969 TOM1O60784 492 aa22.31■■□□□ 1.16
UBR4-210ENST00000466969 TRAPPC8Q9Y2L5 1435 aa22.29■■□□□ 1.16
UBR4-210ENST00000466969 ESF1Q9H501 851 aaKnown RBP22.28■■□□□ 1.16
UBR4-210ENST00000466969 CAMSAP1Q5T5Y3 1602 aa22.26■■□□□ 1.15
UBR4-210ENST00000466969 NCKAP5LQ9HCH0 1330 aa22.26■■□□□ 1.15
UBR4-210ENST00000466969 P3H3Q8IVL6 736 aa22.25■■□□□ 1.15
UBR4-210ENST00000466969 C3P01024 1663 aa22.24■■□□□ 1.15
UBR4-210ENST00000466969 SCAPERQ9BY12 1400 aa22.23■■□□□ 1.15
UBR4-210ENST00000466969 PLEKHD1A6NEE1 506 aa22.22■■□□□ 1.15
UBR4-210ENST00000466969 RAPGEF6Q8TEU7 1601 aa22.18■■□□□ 1.14
UBR4-210ENST00000466969 PKD2Q13563 968 aa22.18■■□□□ 1.14
UBR4-210ENST00000466969 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.16■■□□□ 1.14
UBR4-210ENST00000466969 MYT1LQ9UL68 1186 aa22.14■■□□□ 1.13
UBR4-210ENST00000466969 RGS17Q9UGC6 210 aaPredicted RBP22.13■■□□□ 1.13
UBR4-210ENST00000466969 PPP6R1Q9UPN7 881 aa22.13■■□□□ 1.13
UBR4-210ENST00000466969 SENP3Q9H4L4 574 aaPredicted RBP22.09■■□□□ 1.13
UBR4-210ENST00000466969 NUP153P49790 1475 aaKnown RBP22.08■■□□□ 1.12
UBR4-210ENST00000466969 PLA2R1Q13018 1463 aa22.08■■□□□ 1.12
UBR4-210ENST00000466969 PTPRKQ15262 1439 aa22.06■■□□□ 1.12
UBR4-210ENST00000466969 CNTLNQ9NXG0 1405 aa22.06■■□□□ 1.12
UBR4-210ENST00000466969 CPS1P31327 1500 aa22.06■■□□□ 1.12
UBR4-210ENST00000466969 NPATQ14207 1427 aa22.05■■□□□ 1.12
UBR4-210ENST00000466969 PLCH2O75038 1416 aa22.04■■□□□ 1.12
UBR4-210ENST00000466969 TCOF1Q13428 1488 aaKnown RBP22.03■■□□□ 1.12
UBR4-210ENST00000466969 ZNF518AQ6AHZ1 1483 aa22.03■■□□□ 1.12
UBR4-210ENST00000466969 AGLP35573 1532 aa22.02■■□□□ 1.12
UBR4-210ENST00000466969 EFCAB2Q5VUJ9 269 aa22.01■■□□□ 1.11
UBR4-210ENST00000466969 REREQ9P2R6 1566 aa22■■□□□ 1.11
UBR4-210ENST00000466969 SUPT6HQ7KZ85 1726 aaKnown RBP21.99■■□□□ 1.11
UBR4-210ENST00000466969 AFAP1Q8N556 730 aa21.98■■□□□ 1.11
UBR4-210ENST00000466969 DIP2CQ9Y2E4 1556 aa21.98■■□□□ 1.11
UBR4-210ENST00000466969 POTEAQ6S8J7 498 aa21.97■■□□□ 1.11
UBR4-210ENST00000466969 SHANK2Q9UPX8 1470 aa21.95■■□□□ 1.1
UBR4-210ENST00000466969 KDM5CP41229 1560 aa21.93■■□□□ 1.1
UBR4-210ENST00000466969 ZNF142P52746 1687 aaPredicted RBP21.93■■□□□ 1.1
UBR4-210ENST00000466969 ZMYM3Q14202 1370 aa21.93■■□□□ 1.1
UBR4-210ENST00000466969 SAMD9Q5K651 1589 aa21.92■■□□□ 1.1
UBR4-210ENST00000466969 CEP170BQ9Y4F5 1589 aaPredicted RBP21.91■■□□□ 1.1
UBR4-210ENST00000466969 MROH2AA6NES4 1674 aa21.9■■□□□ 1.1
UBR4-210ENST00000466969 MYO3AQ8NEV4 1616 aa21.9■■□□□ 1.1
UBR4-210ENST00000466969 ALKQ9UM73 1620 aa21.89■■□□□ 1.09
UBR4-210ENST00000466969 ABCA6Q8N139 1617 aa21.88■■□□□ 1.09
UBR4-210ENST00000466969 PRXQ9BXM0 1461 aa21.86■■□□□ 1.09
UBR4-210ENST00000466969 MLH3Q9UHC1 1453 aa21.85■■□□□ 1.09
UBR4-210ENST00000466969 SETD1AO15047 1707 aaKnown RBP21.85■■□□□ 1.09
UBR4-210ENST00000466969 MYO5CQ9NQX4 1742 aa21.85■■□□□ 1.09
UBR4-210ENST00000466969 SRCAPQ6ZRS2 3230 aa21.82■■□□□ 1.08
UBR4-210ENST00000466969 UPF1Q92900 1129 aaKnown RBP eCLIP21.8■■□□□ 1.08
UBR4-210ENST00000466969 ARHGAP5Q13017 1502 aa21.79■■□□□ 1.08
UBR4-210ENST00000466969 POLR1AO95602 1720 aaPredicted RBP21.76■■□□□ 1.07
UBR4-210ENST00000466969 RANGAP1P46060 587 aaPredicted RBP21.76■■□□□ 1.07
UBR4-210ENST00000466969 A2ML1A8K2U0 1454 aa21.75■■□□□ 1.07
UBR4-210ENST00000466969 VWDEQ8N2E2 1590 aa21.74■■□□□ 1.07
UBR4-210ENST00000466969 CDK13Q14004 1512 aaKnown RBP21.74■■□□□ 1.07
UBR4-210ENST00000466969 NEURL4Q96JN8 1562 aa21.73■■□□□ 1.07
UBR4-210ENST00000466969 DNMT1P26358 1616 aaKnown RBP21.73■■□□□ 1.07
UBR4-210ENST00000466969 RNF17Q9BXT8 1623 aaKnown RBP21.73■■□□□ 1.07
UBR4-210ENST00000466969 CLTCQ00610 1675 aaKnown RBP21.72■■□□□ 1.07
UBR4-210ENST00000466969 ANKLE2Q86XL3 938 aa21.71■■□□□ 1.07
UBR4-210ENST00000466969 LRRC7Q96NW7 1537 aa21.67■■□□□ 1.06
UBR4-210ENST00000466969 CDK11AQ9UQ88 783 aaPredicted RBP21.66■■□□□ 1.06
UBR4-210ENST00000466969 KIDINS220Q9ULH0 1771 aa21.66■■□□□ 1.06
UBR4-210ENST00000466969 NPHP4O75161 1426 aaPredicted RBP21.63■■□□□ 1.05
UBR4-210ENST00000466969 KIF14Q15058 1648 aa21.62■■□□□ 1.05
UBR4-210ENST00000466969 GGT6Q6P531 493 aa21.62■■□□□ 1.05
UBR4-210ENST00000466969 ATP1B4Q9UN42 357 aaPredicted RBP21.61■■□□□ 1.05
UBR4-210ENST00000466969 SYNMO15061 1565 aa21.61■■□□□ 1.05
UBR4-210ENST00000466969 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.6■■□□□ 1.05
UBR4-210ENST00000466969 TRIM52Q96A61 297 aa21.59■■□□□ 1.05
UBR4-210ENST00000466969 THEMISQ8N1K5 641 aaPredicted RBP21.58■■□□□ 1.05
UBR4-210ENST00000466969 ABCC1P33527 1531 aa21.58■■□□□ 1.04
UBR4-210ENST00000466969 MED14O60244 1454 aa21.57■■□□□ 1.04
UBR4-210ENST00000466969 ITSN2Q9NZM3 1697 aa21.56■■□□□ 1.04
UBR4-210ENST00000466969 FAM135BQ49AJ0 1406 aa21.55■■□□□ 1.04
UBR4-210ENST00000466969 STRCP1A6NGW2 1772 aa21.55■■□□□ 1.04
UBR4-210ENST00000466969 CLIP1P30622 1438 aa21.55■■□□□ 1.04
UBR4-210ENST00000466969 CDC42BPBQ9Y5S2 1711 aa21.54■■□□□ 1.04
UBR4-210ENST00000466969 TNRQ92752 1358 aa21.53■■□□□ 1.04
UBR4-210ENST00000466969 DEPDC5O75140 1603 aa21.52■■□□□ 1.04
UBR4-210ENST00000466969 IQGAP1P46940 1657 aa21.52■■□□□ 1.04
UBR4-210ENST00000466969 TROQ12816 1431 aaPredicted RBP21.52■■□□□ 1.04
UBR4-210ENST00000466969 SPAG9O60271 1321 aaKnown RBP21.51■■□□□ 1.03
UBR4-210ENST00000466969 ZNF772Q68DY9 489 aaPredicted RBP21.49■■□□□ 1.03
UBR4-210ENST00000466969 FAM135AQ9P2D6 1515 aa21.48■■□□□ 1.03
UBR4-210ENST00000466969 SAMD9LQ8IVG5 1584 aa21.48■■□□□ 1.03
UBR4-210ENST00000466969 A2MP01023 1474 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms