RNA–Protein interactions for RNA: ENST00000466438.1

HMGXB4-206, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-206ENST00000466438 ARHGEF12Q9NZN5 1544 aa25.46■■□□□ 1.67
HMGXB4-206ENST00000466438 NUP153P49790 1475 aaKnown RBP25.44■■□□□ 1.66
HMGXB4-206ENST00000466438 SAMD9Q5K651 1589 aa25.44■■□□□ 1.66
HMGXB4-206ENST00000466438 HECW1Q76N89 1606 aa25.41■■□□□ 1.66
HMGXB4-206ENST00000466438 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.39■■□□□ 1.66
HMGXB4-206ENST00000466438 PTPRTO14522 1441 aa25.38■■□□□ 1.65
HMGXB4-206ENST00000466438 UHRF1BP1Q6BDS2 1440 aa25.38■■□□□ 1.65
HMGXB4-206ENST00000466438 PLEKHD1A6NEE1 506 aa25.37■■□□□ 1.65
HMGXB4-206ENST00000466438 IQSEC2Q5JU85 1478 aa25.36■■□□□ 1.65
HMGXB4-206ENST00000466438 CEBPAP49715 358 aaPredicted RBP25.36■■□□□ 1.65
HMGXB4-206ENST00000466438 C9orf84Q5VXU9 1444 aa25.34■■□□□ 1.65
HMGXB4-206ENST00000466438 ATP10AO60312 1499 aa25.34■■□□□ 1.65
HMGXB4-206ENST00000466438 LTBP4Q8N2S1 1624 aa25.33■■□□□ 1.65
HMGXB4-206ENST00000466438 SCAPERQ9BY12 1400 aa25.29■■□□□ 1.64
HMGXB4-206ENST00000466438 SETD1BQ9UPS6 1966 aaKnown RBP25.29■■□□□ 1.64
HMGXB4-206ENST00000466438 PLCH2O75038 1416 aa25.21■■□□□ 1.63
HMGXB4-206ENST00000466438 NCOA1Q15788 1441 aa25.16■■□□□ 1.62
HMGXB4-206ENST00000466438 C3P01024 1663 aa25.16■■□□□ 1.62
HMGXB4-206ENST00000466438 ZNF518AQ6AHZ1 1483 aa25.13■■□□□ 1.61
HMGXB4-206ENST00000466438 TRAPPC8Q9Y2L5 1435 aa25.12■■□□□ 1.61
HMGXB4-206ENST00000466438 REREQ9P2R6 1566 aa25.11■■□□□ 1.61
HMGXB4-206ENST00000466438 KDM5CP41229 1560 aa25.1■■□□□ 1.61
HMGXB4-206ENST00000466438 EFCAB2Q5VUJ9 269 aa25.1■■□□□ 1.61
HMGXB4-206ENST00000466438 UBAP1LF5GYI3 381 aa25.09■■□□□ 1.61
HMGXB4-206ENST00000466438 CDK13Q14004 1512 aaKnown RBP25.08■■□□□ 1.61
HMGXB4-206ENST00000466438 PHF23Q9BUL5 403 aaPredicted RBP25.08■■□□□ 1.61
HMGXB4-206ENST00000466438 DIP2CQ9Y2E4 1556 aa25.08■■□□□ 1.61
HMGXB4-206ENST00000466438 MYO5CQ9NQX4 1742 aa25.08■■□□□ 1.61
HMGXB4-206ENST00000466438 RANGAP1P46060 587 aaPredicted RBP25.06■■□□□ 1.6
HMGXB4-206ENST00000466438 ESF1Q9H501 851 aaKnown RBP25.04■■□□□ 1.6
HMGXB4-206ENST00000466438 AGLP35573 1532 aa25.03■■□□□ 1.6
HMGXB4-206ENST00000466438 CAMSAP1Q5T5Y3 1602 aa25.03■■□□□ 1.6
HMGXB4-206ENST00000466438 AFAP1Q8N556 730 aa25.02■■□□□ 1.6
HMGXB4-206ENST00000466438 CSRNP3Q8WYN3 585 aa25.01■■□□□ 1.59
HMGXB4-206ENST00000466438 ZNF335Q9H4Z2 1342 aaPredicted RBP25.01■■□□□ 1.59
HMGXB4-206ENST00000466438 MED1Q15648 1581 aaPredicted RBP25.01■■□□□ 1.59
HMGXB4-206ENST00000466438 MYT1LQ9UL68 1186 aa25■■□□□ 1.59
HMGXB4-206ENST00000466438 CNTLNQ9NXG0 1405 aa25■■□□□ 1.59
HMGXB4-206ENST00000466438 ABCA6Q8N139 1617 aa25■■□□□ 1.59
HMGXB4-206ENST00000466438 MLH3Q9UHC1 1453 aa24.97■■□□□ 1.59
HMGXB4-206ENST00000466438 ARHGAP5Q13017 1502 aa24.96■■□□□ 1.59
HMGXB4-206ENST00000466438 NPATQ14207 1427 aa24.95■■□□□ 1.59
HMGXB4-206ENST00000466438 NCKAP5LQ9HCH0 1330 aa24.93■■□□□ 1.58
HMGXB4-206ENST00000466438 KIF14Q15058 1648 aa24.92■■□□□ 1.58
HMGXB4-206ENST00000466438 MROH2AA6NES4 1674 aa24.9■■□□□ 1.58
HMGXB4-206ENST00000466438 PLA2R1Q13018 1463 aa24.89■■□□□ 1.58
HMGXB4-206ENST00000466438 HSPA1LP34931 641 aa24.88■■□□□ 1.57
HMGXB4-206ENST00000466438 PKD2Q13563 968 aa24.88■■□□□ 1.57
HMGXB4-206ENST00000466438 CDK11AQ9UQ88 783 aaPredicted RBP24.88■■□□□ 1.57
HMGXB4-206ENST00000466438 ZNF142P52746 1687 aaPredicted RBP24.85■■□□□ 1.57
HMGXB4-206ENST00000466438 TCOF1Q13428 1488 aaKnown RBP24.85■■□□□ 1.57
HMGXB4-206ENST00000466438 TROQ12816 1431 aaPredicted RBP24.84■■□□□ 1.57
HMGXB4-206ENST00000466438 ZMYM3Q14202 1370 aa24.82■■□□□ 1.56
HMGXB4-206ENST00000466438 MYO3AQ8NEV4 1616 aa24.82■■□□□ 1.56
HMGXB4-206ENST00000466438 SCAF1Q9H7N4 1312 aaKnown RBP24.82■■□□□ 1.56
HMGXB4-206ENST00000466438 ABCC1P33527 1531 aa24.81■■□□□ 1.56
HMGXB4-206ENST00000466438 KIDINS220Q9ULH0 1771 aa24.81■■□□□ 1.56
HMGXB4-206ENST00000466438 CDC42BPBQ9Y5S2 1711 aa24.81■■□□□ 1.56
HMGXB4-206ENST00000466438 CLIP1P30622 1438 aa24.8■■□□□ 1.56
HMGXB4-206ENST00000466438 SUPT6HQ7KZ85 1726 aaKnown RBP24.79■■□□□ 1.56
HMGXB4-206ENST00000466438 ATP1B4Q9UN42 357 aaPredicted RBP24.79■■□□□ 1.56
HMGXB4-206ENST00000466438 PPP6R1Q9UPN7 881 aa24.79■■□□□ 1.56
HMGXB4-206ENST00000466438 CEP170BQ9Y4F5 1589 aaPredicted RBP24.79■■□□□ 1.56
HMGXB4-206ENST00000466438 ITSN2Q9NZM3 1697 aa24.78■■□□□ 1.56
HMGXB4-206ENST00000466438 EEA1Q15075 1411 aa24.78■■□□□ 1.56
HMGXB4-206ENST00000466438 FMN1Q68DA7 1419 aa24.78■■□□□ 1.56
HMGXB4-206ENST00000466438 PIP4K2BP78356 416 aa24.78■■□□□ 1.56
HMGXB4-206ENST00000466438 TOM1O60784 492 aa24.77■■□□□ 1.56
HMGXB4-206ENST00000466438 PREX2Q70Z35 1606 aa24.75■■□□□ 1.55
HMGXB4-206ENST00000466438 CPS1P31327 1500 aa24.73■■□□□ 1.55
HMGXB4-206ENST00000466438 PTPRKQ15262 1439 aa24.71■■□□□ 1.55
HMGXB4-206ENST00000466438 CLTCQ00610 1675 aaKnown RBP24.71■■□□□ 1.55
HMGXB4-206ENST00000466438 SAMD9LQ8IVG5 1584 aa24.67■■□□□ 1.54
HMGXB4-206ENST00000466438 SHANK2Q9UPX8 1470 aa24.64■■□□□ 1.54
HMGXB4-206ENST00000466438 A2ML1A8K2U0 1454 aa24.63■■□□□ 1.53
HMGXB4-206ENST00000466438 LRRIQ1Q96JM4 1722 aa24.62■■□□□ 1.53
HMGXB4-206ENST00000466438 PLXNC1O60486 1568 aa24.62■■□□□ 1.53
HMGXB4-206ENST00000466438 DNMT1P26358 1616 aaKnown RBP24.61■■□□□ 1.53
HMGXB4-206ENST00000466438 ARHGAP35Q9NRY4 1499 aa24.61■■□□□ 1.53
HMGXB4-206ENST00000466438 POLR1AO95602 1720 aaPredicted RBP24.61■■□□□ 1.53
HMGXB4-206ENST00000466438 NEURL4Q96JN8 1562 aa24.6■■□□□ 1.53
HMGXB4-206ENST00000466438 ALKQ9UM73 1620 aa24.6■■□□□ 1.53
HMGXB4-206ENST00000466438 SPAG9O60271 1321 aaKnown RBP24.59■■□□□ 1.53
HMGXB4-206ENST00000466438 CDC42BPAQ5VT25 1732 aa24.58■■□□□ 1.52
HMGXB4-206ENST00000466438 ATP7AQ04656 1500 aa24.56■■□□□ 1.52
HMGXB4-206ENST00000466438 A2MP01023 1474 aa24.56■■□□□ 1.52
HMGXB4-206ENST00000466438 SYCP2Q9BX26 1530 aa24.56■■□□□ 1.52
HMGXB4-206ENST00000466438 VWDEQ8N2E2 1590 aa24.54■■□□□ 1.52
HMGXB4-206ENST00000466438 GGT6Q6P531 493 aa24.53■■□□□ 1.52
HMGXB4-206ENST00000466438 INO80Q9ULG1 1556 aaPredicted RBP24.52■■□□□ 1.52
HMGXB4-206ENST00000466438 CCDC18Q5T9S5 1454 aa24.5■■□□□ 1.51
HMGXB4-206ENST00000466438 ZNF777Q9ULD5 760 aaPredicted RBP24.49■■□□□ 1.51
HMGXB4-206ENST00000466438 RGS17Q9UGC6 210 aaPredicted RBP24.48■■□□□ 1.51
HMGXB4-206ENST00000466438 HNRNPMP52272 730 aaKnown RBP eCLIP24.46■■□□□ 1.51
HMGXB4-206ENST00000466438 UBTFP17480 764 aaKnown RBP24.45■■□□□ 1.5
HMGXB4-206ENST00000466438 KIAA1107Q9UPP5 1409 aa24.44■■□□□ 1.5
HMGXB4-206ENST00000466438 TNRQ92752 1358 aa24.44■■□□□ 1.5
HMGXB4-206ENST00000466438 ANKLE2Q86XL3 938 aa24.44■■□□□ 1.5
HMGXB4-206ENST00000466438 SENP3Q9H4L4 574 aaPredicted RBP24.43■■□□□ 1.5
HMGXB4-206ENST00000466438 MED14O60244 1454 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms