RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 PLCH2O75038 1416 aa24.41■■□□□ 1.5
CXCR4-203ENST00000466288 ARHGEF12Q9NZN5 1544 aa24.38■■□□□ 1.49
CXCR4-203ENST00000466288 EEA1Q15075 1411 aa24.38■■□□□ 1.49
CXCR4-203ENST00000466288 FER1L4A9Z1Z3 1794 aa24.38■■□□□ 1.49
CXCR4-203ENST00000466288 ATP10AO60312 1499 aa24.37■■□□□ 1.49
CXCR4-203ENST00000466288 CDK13Q14004 1512 aaKnown RBP24.37■■□□□ 1.49
CXCR4-203ENST00000466288 C9orf84Q5VXU9 1444 aa24.35■■□□□ 1.49
CXCR4-203ENST00000466288 CEBPAP49715 358 aaPredicted RBP24.34■■□□□ 1.49
CXCR4-203ENST00000466288 EFCAB2Q5VUJ9 269 aa24.31■■□□□ 1.48
CXCR4-203ENST00000466288 ILDR2Q71H61 639 aa24.29■■□□□ 1.48
CXCR4-203ENST00000466288 PREX1Q8TCU6 1659 aa24.29■■□□□ 1.48
CXCR4-203ENST00000466288 DMRT2Q9Y5R5 561 aa24.28■■□□□ 1.48
CXCR4-203ENST00000466288 DISP3Q9P2K9 1392 aa24.26■■□□□ 1.47
CXCR4-203ENST00000466288 AFAP1Q8N556 730 aa24.24■■□□□ 1.47
CXCR4-203ENST00000466288 STRCQ7RTU9 1775 aa24.23■■□□□ 1.47
CXCR4-203ENST00000466288 ZNF518AQ6AHZ1 1483 aa24.23■■□□□ 1.47
CXCR4-203ENST00000466288 UHRF1BP1Q6BDS2 1440 aa24.23■■□□□ 1.47
CXCR4-203ENST00000466288 SOCS7O14512 581 aa24.2■■□□□ 1.47
CXCR4-203ENST00000466288 ATP1B4Q9UN42 357 aaPredicted RBP24.2■■□□□ 1.47
CXCR4-203ENST00000466288 KDM5CP41229 1560 aa24.2■■□□□ 1.46
CXCR4-203ENST00000466288 CDK11AQ9UQ88 783 aaPredicted RBP24.19■■□□□ 1.46
CXCR4-203ENST00000466288 MYO5CQ9NQX4 1742 aa24.18■■□□□ 1.46
CXCR4-203ENST00000466288 FMN1Q68DA7 1419 aa24.18■■□□□ 1.46
CXCR4-203ENST00000466288 KIF14Q15058 1648 aa24.17■■□□□ 1.46
CXCR4-203ENST00000466288 PTPRTO14522 1441 aa24.16■■□□□ 1.46
CXCR4-203ENST00000466288 TROQ12816 1431 aaPredicted RBP24.15■■□□□ 1.46
CXCR4-203ENST00000466288 ARHGAP5Q13017 1502 aa24.15■■□□□ 1.46
CXCR4-203ENST00000466288 DIP2CQ9Y2E4 1556 aa24.14■■□□□ 1.46
CXCR4-203ENST00000466288 REREQ9P2R6 1566 aa24.13■■□□□ 1.45
CXCR4-203ENST00000466288 MYT1LQ9UL68 1186 aa24.13■■□□□ 1.45
CXCR4-203ENST00000466288 ARHGAP35Q9NRY4 1499 aa24.12■■□□□ 1.45
CXCR4-203ENST00000466288 SETD1BQ9UPS6 1966 aaKnown RBP24.12■■□□□ 1.45
CXCR4-203ENST00000466288 MLH3Q9UHC1 1453 aa24.11■■□□□ 1.45
CXCR4-203ENST00000466288 TRAPPC8Q9Y2L5 1435 aa24.08■■□□□ 1.45
CXCR4-203ENST00000466288 UBTFP17480 764 aaKnown RBP24.08■■□□□ 1.45
CXCR4-203ENST00000466288 ABCA6Q8N139 1617 aa24.08■■□□□ 1.44
CXCR4-203ENST00000466288 CLIP1P30622 1438 aa24.08■■□□□ 1.44
CXCR4-203ENST00000466288 AGLP35573 1532 aa24.07■■□□□ 1.44
CXCR4-203ENST00000466288 LTBP4Q8N2S1 1624 aa24.07■■□□□ 1.44
CXCR4-203ENST00000466288 C3P01024 1663 aa24.07■■□□□ 1.44
CXCR4-203ENST00000466288 EHMT2Q96KQ7 1210 aa24.07■■□□□ 1.44
CXCR4-203ENST00000466288 ESF1Q9H501 851 aaKnown RBP24.05■■□□□ 1.44
CXCR4-203ENST00000466288 SPATA31D1Q6ZQQ2 1576 aa24.04■■□□□ 1.44
CXCR4-203ENST00000466288 NCOA1Q15788 1441 aa24.03■■□□□ 1.44
CXCR4-203ENST00000466288 IQSEC2Q5JU85 1478 aa24.02■■□□□ 1.43
CXCR4-203ENST00000466288 CDC42BPBQ9Y5S2 1711 aa24■■□□□ 1.43
CXCR4-203ENST00000466288 ABCC1P33527 1531 aa24■■□□□ 1.43
CXCR4-203ENST00000466288 CNTLNQ9NXG0 1405 aa23.99■■□□□ 1.43
CXCR4-203ENST00000466288 LRRIQ1Q96JM4 1722 aa23.96■■□□□ 1.43
CXCR4-203ENST00000466288 PREX2Q70Z35 1606 aa23.95■■□□□ 1.42
CXCR4-203ENST00000466288 NPATQ14207 1427 aa23.94■■□□□ 1.42
CXCR4-203ENST00000466288 KIDINS220Q9ULH0 1771 aa23.94■■□□□ 1.42
CXCR4-203ENST00000466288 ITSN2Q9NZM3 1697 aa23.92■■□□□ 1.42
CXCR4-203ENST00000466288 CAMSAP1Q5T5Y3 1602 aa23.91■■□□□ 1.42
CXCR4-203ENST00000466288 ZMYM3Q14202 1370 aa23.91■■□□□ 1.42
CXCR4-203ENST00000466288 NCKAP5LQ9HCH0 1330 aa23.89■■□□□ 1.41
CXCR4-203ENST00000466288 ZNF335Q9H4Z2 1342 aaPredicted RBP23.88■■□□□ 1.41
CXCR4-203ENST00000466288 CASKIN1Q8WXD9 1431 aa23.88■■□□□ 1.41
CXCR4-203ENST00000466288 CCDC18Q5T9S5 1454 aa23.87■■□□□ 1.41
CXCR4-203ENST00000466288 SAMD9LQ8IVG5 1584 aa23.87■■□□□ 1.41
CXCR4-203ENST00000466288 MROH2AA6NES4 1674 aa23.85■■□□□ 1.41
CXCR4-203ENST00000466288 UBAP1LF5GYI3 381 aa23.83■■□□□ 1.41
CXCR4-203ENST00000466288 ZNF777Q9ULD5 760 aaPredicted RBP23.83■■□□□ 1.41
CXCR4-203ENST00000466288 SPAG9O60271 1321 aaKnown RBP23.83■■□□□ 1.41
CXCR4-203ENST00000466288 CDC42BPAQ5VT25 1732 aa23.82■■□□□ 1.4
CXCR4-203ENST00000466288 HNRNPMP52272 730 aaKnown RBP eCLIP23.81■■□□□ 1.4
CXCR4-203ENST00000466288 PKD2Q13563 968 aa23.81■■□□□ 1.4
CXCR4-203ENST00000466288 PLA2R1Q13018 1463 aa23.81■■□□□ 1.4
CXCR4-203ENST00000466288 SYCP2Q9BX26 1530 aa23.8■■□□□ 1.4
CXCR4-203ENST00000466288 TCOF1Q13428 1488 aaKnown RBP23.79■■□□□ 1.4
CXCR4-203ENST00000466288 GPATCH8Q9UKJ3 1502 aaKnown RBP23.78■■□□□ 1.4
CXCR4-203ENST00000466288 PTPRKQ15262 1439 aa23.78■■□□□ 1.4
CXCR4-203ENST00000466288 PLXNC1O60486 1568 aa23.76■■□□□ 1.39
CXCR4-203ENST00000466288 KIAA1107Q9UPP5 1409 aa23.75■■□□□ 1.39
CXCR4-203ENST00000466288 MYO3AQ8NEV4 1616 aa23.75■■□□□ 1.39
CXCR4-203ENST00000466288 ZNF142P52746 1687 aaPredicted RBP23.75■■□□□ 1.39
CXCR4-203ENST00000466288 A2MP01023 1474 aa23.75■■□□□ 1.39
CXCR4-203ENST00000466288 CEP170BQ9Y4F5 1589 aaPredicted RBP23.74■■□□□ 1.39
CXCR4-203ENST00000466288 SUPT6HQ7KZ85 1726 aaKnown RBP23.74■■□□□ 1.39
CXCR4-203ENST00000466288 ATP7AQ04656 1500 aa23.74■■□□□ 1.39
CXCR4-203ENST00000466288 CLTCQ00610 1675 aaKnown RBP23.73■■□□□ 1.39
CXCR4-203ENST00000466288 GGT6Q6P531 493 aa23.73■■□□□ 1.39
CXCR4-203ENST00000466288 FYCO1Q9BQS8 1478 aa23.72■■□□□ 1.39
CXCR4-203ENST00000466288 PPP6R1Q9UPN7 881 aa23.72■■□□□ 1.39
CXCR4-203ENST00000466288 CFDP1Q9UEE9 299 aaPredicted RBP23.7■■□□□ 1.38
CXCR4-203ENST00000466288 INO80Q9ULG1 1556 aaPredicted RBP23.7■■□□□ 1.38
CXCR4-203ENST00000466288 PLEKHH2Q8IVE3 1493 aa23.69■■□□□ 1.38
CXCR4-203ENST00000466288 A2ML1A8K2U0 1454 aa23.64■■□□□ 1.38
CXCR4-203ENST00000466288 CCNB3Q8WWL7 1395 aa23.64■■□□□ 1.37
CXCR4-203ENST00000466288 HSPA1LP34931 641 aa23.63■■□□□ 1.37
CXCR4-203ENST00000466288 DNMT1P26358 1616 aaKnown RBP23.61■■□□□ 1.37
CXCR4-203ENST00000466288 ZNF644Q9H582 1327 aaPredicted RBP23.6■■□□□ 1.37
CXCR4-203ENST00000466288 PIP4K2BP78356 416 aa23.59■■□□□ 1.37
CXCR4-203ENST00000466288 SCAF1Q9H7N4 1312 aaKnown RBP23.58■■□□□ 1.37
CXCR4-203ENST00000466288 TOM1O60784 492 aa23.58■■□□□ 1.37
CXCR4-203ENST00000466288 MBD5Q9P267 1494 aa23.57■■□□□ 1.36
CXCR4-203ENST00000466288 MED1Q15648 1581 aaPredicted RBP23.57■■□□□ 1.36
CXCR4-203ENST00000466288 FBXO31Q5XUX0 539 aaPredicted RBP23.56■■□□□ 1.36
CXCR4-203ENST00000466288 ADGBQ8N7X0 1667 aa23.56■■□□□ 1.36
CXCR4-203ENST00000466288 CPS1P31327 1500 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms