RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 FAM9AQ8IZU1 332 aaPredicted RBP16.78■□□□□ 0.28
USP39-212ENST00000465514 SAMD9Q5K651 1589 aa16.77■□□□□ 0.28
USP39-212ENST00000465514 MAGI2Q86UL8 1455 aa16.77■□□□□ 0.28
USP39-212ENST00000465514 LTBP4Q8N2S1 1624 aa16.77■□□□□ 0.27
USP39-212ENST00000465514 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.76■□□□□ 0.27
USP39-212ENST00000465514 HNRNPUL2Q1KMD3 747 aaKnown RBP16.76■□□□□ 0.27
USP39-212ENST00000465514 SETD1BQ9UPS6 1966 aaKnown RBP16.76■□□□□ 0.27
USP39-212ENST00000465514 NUP153P49790 1475 aaKnown RBP16.75■□□□□ 0.27
USP39-212ENST00000465514 UHRF1BP1Q6BDS2 1440 aa16.75■□□□□ 0.27
USP39-212ENST00000465514 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.75■□□□□ 0.27
USP39-212ENST00000465514 IQSEC2Q5JU85 1478 aa16.73■□□□□ 0.27
USP39-212ENST00000465514 PTPRTO14522 1441 aa16.73■□□□□ 0.27
USP39-212ENST00000465514 CEBPAP49715 358 aaPredicted RBP16.73■□□□□ 0.27
USP39-212ENST00000465514 PRXQ9BXM0 1461 aa16.73■□□□□ 0.27
USP39-212ENST00000465514 C9orf84Q5VXU9 1444 aa16.7■□□□□ 0.26
USP39-212ENST00000465514 C3P01024 1663 aa16.69■□□□□ 0.26
USP39-212ENST00000465514 ATP10AO60312 1499 aa16.69■□□□□ 0.26
USP39-212ENST00000465514 SCAPERQ9BY12 1400 aa16.65■□□□□ 0.26
USP39-212ENST00000465514 PLEKHD1A6NEE1 506 aa16.63■□□□□ 0.25
USP39-212ENST00000465514 NCOA1Q15788 1441 aa16.62■□□□□ 0.25
USP39-212ENST00000465514 MED1Q15648 1581 aaPredicted RBP16.61■□□□□ 0.25
USP39-212ENST00000465514 MYO5CQ9NQX4 1742 aa16.61■□□□□ 0.25
USP39-212ENST00000465514 DIP2CQ9Y2E4 1556 aa16.58■□□□□ 0.24
USP39-212ENST00000465514 PLCH2O75038 1416 aa16.57■□□□□ 0.24
USP39-212ENST00000465514 UBAP1LF5GYI3 381 aa16.57■□□□□ 0.24
USP39-212ENST00000465514 CAMSAP1Q5T5Y3 1602 aa16.56■□□□□ 0.24
USP39-212ENST00000465514 KDM5CP41229 1560 aa16.56■□□□□ 0.24
USP39-212ENST00000465514 ABCA6Q8N139 1617 aa16.56■□□□□ 0.24
USP39-212ENST00000465514 REREQ9P2R6 1566 aa16.55■□□□□ 0.24
USP39-212ENST00000465514 CDK13Q14004 1512 aaKnown RBP16.55■□□□□ 0.24
USP39-212ENST00000465514 ZNF518AQ6AHZ1 1483 aa16.54■□□□□ 0.24
USP39-212ENST00000465514 TRAPPC8Q9Y2L5 1435 aa16.53■□□□□ 0.24
USP39-212ENST00000465514 ZNF335Q9H4Z2 1342 aaPredicted RBP16.53■□□□□ 0.24
USP39-212ENST00000465514 SUPT6HQ7KZ85 1726 aaKnown RBP16.53■□□□□ 0.24
USP39-212ENST00000465514 RANGAP1P46060 587 aaPredicted RBP16.5■□□□□ 0.23
USP39-212ENST00000465514 AGLP35573 1532 aa16.49■□□□□ 0.23
USP39-212ENST00000465514 KIF14Q15058 1648 aa16.48■□□□□ 0.23
USP39-212ENST00000465514 MROH2AA6NES4 1674 aa16.48■□□□□ 0.23
USP39-212ENST00000465514 ZNF142P52746 1687 aaPredicted RBP16.48■□□□□ 0.23
USP39-212ENST00000465514 ARHGAP5Q13017 1502 aa16.46■□□□□ 0.23
USP39-212ENST00000465514 EFCAB2Q5VUJ9 269 aa16.46■□□□□ 0.23
USP39-212ENST00000465514 AFAP1Q8N556 730 aa16.46■□□□□ 0.23
USP39-212ENST00000465514 ESF1Q9H501 851 aaKnown RBP16.46■□□□□ 0.23
USP39-212ENST00000465514 NCKAP5LQ9HCH0 1330 aa16.45■□□□□ 0.22
USP39-212ENST00000465514 MYO3AQ8NEV4 1616 aa16.45■□□□□ 0.22
USP39-212ENST00000465514 HSPA1LP34931 641 aa16.45■□□□□ 0.22
USP39-212ENST00000465514 MYT1LQ9UL68 1186 aa16.45■□□□□ 0.22
USP39-212ENST00000465514 CNTLNQ9NXG0 1405 aa16.44■□□□□ 0.22
USP39-212ENST00000465514 NPATQ14207 1427 aa16.43■□□□□ 0.22
USP39-212ENST00000465514 SCAF1Q9H7N4 1312 aaKnown RBP16.43■□□□□ 0.22
USP39-212ENST00000465514 MLH3Q9UHC1 1453 aa16.42■□□□□ 0.22
USP39-212ENST00000465514 CDC42BPBQ9Y5S2 1711 aa16.42■□□□□ 0.22
USP39-212ENST00000465514 ITSN2Q9NZM3 1697 aa16.41■□□□□ 0.22
USP39-212ENST00000465514 PLA2R1Q13018 1463 aa16.41■□□□□ 0.22
USP39-212ENST00000465514 KIDINS220Q9ULH0 1771 aa16.41■□□□□ 0.22
USP39-212ENST00000465514 TCOF1Q13428 1488 aaKnown RBP16.4■□□□□ 0.22
USP39-212ENST00000465514 CEP170BQ9Y4F5 1589 aaPredicted RBP16.39■□□□□ 0.21
USP39-212ENST00000465514 PIP4K2BP78356 416 aa16.39■□□□□ 0.21
USP39-212ENST00000465514 CLTCQ00610 1675 aaKnown RBP16.38■□□□□ 0.21
USP39-212ENST00000465514 CSRNP3Q8WYN3 585 aa16.38■□□□□ 0.21
USP39-212ENST00000465514 ABCC1P33527 1531 aa16.38■□□□□ 0.21
USP39-212ENST00000465514 PKD2Q13563 968 aa16.36■□□□□ 0.21
USP39-212ENST00000465514 PREX2Q70Z35 1606 aa16.36■□□□□ 0.21
USP39-212ENST00000465514 POLR1AO95602 1720 aaPredicted RBP16.36■□□□□ 0.21
USP39-212ENST00000465514 LRRIQ1Q96JM4 1722 aa16.33■□□□□ 0.21
USP39-212ENST00000465514 PPP6R1Q9UPN7 881 aa16.33■□□□□ 0.2
USP39-212ENST00000465514 ZMYM3Q14202 1370 aa16.33■□□□□ 0.2
USP39-212ENST00000465514 CPS1P31327 1500 aa16.32■□□□□ 0.2
USP39-212ENST00000465514 ALKQ9UM73 1620 aa16.31■□□□□ 0.2
USP39-212ENST00000465514 TROQ12816 1431 aaPredicted RBP16.31■□□□□ 0.2
USP39-212ENST00000465514 TOM1O60784 492 aa16.31■□□□□ 0.2
USP39-212ENST00000465514 CLIP1P30622 1438 aa16.29■□□□□ 0.2
USP39-212ENST00000465514 ATP1B4Q9UN42 357 aaPredicted RBP16.29■□□□□ 0.2
USP39-212ENST00000465514 NEURL4Q96JN8 1562 aa16.29■□□□□ 0.2
USP39-212ENST00000465514 PTPRKQ15262 1439 aa16.28■□□□□ 0.2
USP39-212ENST00000465514 DNMT1P26358 1616 aaKnown RBP16.28■□□□□ 0.2
USP39-212ENST00000465514 CDK11AQ9UQ88 783 aaPredicted RBP16.28■□□□□ 0.2
USP39-212ENST00000465514 CDC42BPAQ5VT25 1732 aa16.28■□□□□ 0.2
USP39-212ENST00000465514 EEA1Q15075 1411 aa16.28■□□□□ 0.2
USP39-212ENST00000465514 SAMD9LQ8IVG5 1584 aa16.27■□□□□ 0.2
USP39-212ENST00000465514 SHANK2Q9UPX8 1470 aa16.27■□□□□ 0.19
USP39-212ENST00000465514 FMN1Q68DA7 1419 aa16.25■□□□□ 0.19
USP39-212ENST00000465514 PLXNC1O60486 1568 aa16.25■□□□□ 0.19
USP39-212ENST00000465514 A2ML1A8K2U0 1454 aa16.23■□□□□ 0.19
USP39-212ENST00000465514 VWDEQ8N2E2 1590 aa16.23■□□□□ 0.19
USP39-212ENST00000465514 ATP7AQ04656 1500 aa16.2■□□□□ 0.18
USP39-212ENST00000465514 SYCP2Q9BX26 1530 aa16.2■□□□□ 0.18
USP39-212ENST00000465514 INO80Q9ULG1 1556 aaPredicted RBP16.2■□□□□ 0.18
USP39-212ENST00000465514 RNF17Q9BXT8 1623 aaKnown RBP16.19■□□□□ 0.18
USP39-212ENST00000465514 STRCP1A6NGW2 1772 aa16.18■□□□□ 0.18
USP39-212ENST00000465514 RGS17Q9UGC6 210 aaPredicted RBP16.18■□□□□ 0.18
USP39-212ENST00000465514 A2MP01023 1474 aa16.16■□□□□ 0.18
USP39-212ENST00000465514 ARHGAP35Q9NRY4 1499 aa16.16■□□□□ 0.18
USP39-212ENST00000465514 SETD1AO15047 1707 aaKnown RBP16.16■□□□□ 0.18
USP39-212ENST00000465514 ADGBQ8N7X0 1667 aa16.15■□□□□ 0.18
USP39-212ENST00000465514 MSH5O43196 834 aa16.15■□□□□ 0.18
USP39-212ENST00000465514 SPAG9O60271 1321 aaKnown RBP16.15■□□□□ 0.18
USP39-212ENST00000465514 SYNMO15061 1565 aa16.14■□□□□ 0.17
USP39-212ENST00000465514 IQGAP1P46940 1657 aa16.14■□□□□ 0.17
USP39-212ENST00000465514 DEPDC5O75140 1603 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms