RNA–Protein interactions for RNA: ENST00000461294.2

PDGFRA-202, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 3

Gene PDGFRA, Length 480 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-202ENST00000461294 ZFYVE16Q7Z3T8 1539 aa13.86□□□□□ -0.19
PDGFRA-202ENST00000461294 FAM9AQ8IZU1 332 aaPredicted RBP13.86□□□□□ -0.19
PDGFRA-202ENST00000461294 PHF23Q9BUL5 403 aaPredicted RBP13.85□□□□□ -0.19
PDGFRA-202ENST00000461294 EEA1Q15075 1411 aa13.84□□□□□ -0.19
PDGFRA-202ENST00000461294 HSPA1LP34931 641 aa13.84□□□□□ -0.19
PDGFRA-202ENST00000461294 NCOA1Q15788 1441 aa13.8□□□□□ -0.2
PDGFRA-202ENST00000461294 ZNF335Q9H4Z2 1342 aaPredicted RBP13.79□□□□□ -0.2
PDGFRA-202ENST00000461294 ATP10AO60312 1499 aa13.79□□□□□ -0.2
PDGFRA-202ENST00000461294 CFAP74Q9C0B2 1584 aa13.78□□□□□ -0.2
PDGFRA-202ENST00000461294 HECW1Q76N89 1606 aa13.78□□□□□ -0.2
PDGFRA-202ENST00000461294 CTTNBP2Q8WZ74 1663 aa13.78□□□□□ -0.2
PDGFRA-202ENST00000461294 CSRNP3Q8WYN3 585 aa13.77□□□□□ -0.21
PDGFRA-202ENST00000461294 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.76□□□□□ -0.21
PDGFRA-202ENST00000461294 HNRNPUL2Q1KMD3 747 aaKnown RBP13.76□□□□□ -0.21
PDGFRA-202ENST00000461294 C9orf84Q5VXU9 1444 aa13.75□□□□□ -0.21
PDGFRA-202ENST00000461294 TRAPPC8Q9Y2L5 1435 aa13.74□□□□□ -0.21
PDGFRA-202ENST00000461294 SCAF1Q9H7N4 1312 aaKnown RBP13.74□□□□□ -0.21
PDGFRA-202ENST00000461294 TOM1O60784 492 aa13.73□□□□□ -0.21
PDGFRA-202ENST00000461294 PIP4K2BP78356 416 aa13.73□□□□□ -0.21
PDGFRA-202ENST00000461294 C3P01024 1663 aa13.72□□□□□ -0.21
PDGFRA-202ENST00000461294 NCKAP5LQ9HCH0 1330 aa13.7□□□□□ -0.22
PDGFRA-202ENST00000461294 PLEKHD1A6NEE1 506 aa13.7□□□□□ -0.22
PDGFRA-202ENST00000461294 CAMSAP1Q5T5Y3 1602 aa13.7□□□□□ -0.22
PDGFRA-202ENST00000461294 SCAPERQ9BY12 1400 aa13.7□□□□□ -0.22
PDGFRA-202ENST00000461294 P3H3Q8IVL6 736 aa13.69□□□□□ -0.22
PDGFRA-202ENST00000461294 PKD2Q13563 968 aa13.68□□□□□ -0.22
PDGFRA-202ENST00000461294 ESF1Q9H501 851 aaKnown RBP13.67□□□□□ -0.22
PDGFRA-202ENST00000461294 RGS17Q9UGC6 210 aaPredicted RBP13.67□□□□□ -0.22
PDGFRA-202ENST00000461294 RAPGEF6Q8TEU7 1601 aa13.67□□□□□ -0.22
PDGFRA-202ENST00000461294 PRXQ9BXM0 1461 aa13.67□□□□□ -0.22
PDGFRA-202ENST00000461294 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.66□□□□□ -0.22
PDGFRA-202ENST00000461294 NUP153P49790 1475 aaKnown RBP13.62□□□□□ -0.23
PDGFRA-202ENST00000461294 PPP6R1Q9UPN7 881 aa13.61□□□□□ -0.23
PDGFRA-202ENST00000461294 PLA2R1Q13018 1463 aa13.61□□□□□ -0.23
PDGFRA-202ENST00000461294 PLCH2O75038 1416 aa13.6□□□□□ -0.23
PDGFRA-202ENST00000461294 NPATQ14207 1427 aa13.6□□□□□ -0.23
PDGFRA-202ENST00000461294 CNTLNQ9NXG0 1405 aa13.59□□□□□ -0.23
PDGFRA-202ENST00000461294 TCOF1Q13428 1488 aaKnown RBP13.59□□□□□ -0.23
PDGFRA-202ENST00000461294 AGLP35573 1532 aa13.59□□□□□ -0.23
PDGFRA-202ENST00000461294 REREQ9P2R6 1566 aa13.58□□□□□ -0.23
PDGFRA-202ENST00000461294 PTPRKQ15262 1439 aa13.58□□□□□ -0.24
PDGFRA-202ENST00000461294 CPS1P31327 1500 aa13.58□□□□□ -0.24
PDGFRA-202ENST00000461294 EFCAB2Q5VUJ9 269 aa13.57□□□□□ -0.24
PDGFRA-202ENST00000461294 ZNF518AQ6AHZ1 1483 aa13.56□□□□□ -0.24
PDGFRA-202ENST00000461294 AFAP1Q8N556 730 aa13.56□□□□□ -0.24
PDGFRA-202ENST00000461294 SUPT6HQ7KZ85 1726 aaKnown RBP13.56□□□□□ -0.24
PDGFRA-202ENST00000461294 MYT1LQ9UL68 1186 aa13.55□□□□□ -0.24
PDGFRA-202ENST00000461294 DIP2CQ9Y2E4 1556 aa13.54□□□□□ -0.24
PDGFRA-202ENST00000461294 UBTFP17480 764 aaKnown RBP13.54□□□□□ -0.24
PDGFRA-202ENST00000461294 POTEAQ6S8J7 498 aa13.54□□□□□ -0.24
PDGFRA-202ENST00000461294 KDM5CP41229 1560 aa13.54□□□□□ -0.24
PDGFRA-202ENST00000461294 SAMD9Q5K651 1589 aa13.54□□□□□ -0.24
PDGFRA-202ENST00000461294 ZMYM3Q14202 1370 aa13.53□□□□□ -0.24
PDGFRA-202ENST00000461294 ALKQ9UM73 1620 aa13.53□□□□□ -0.24
PDGFRA-202ENST00000461294 SHANK2Q9UPX8 1470 aa13.52□□□□□ -0.25
PDGFRA-202ENST00000461294 ZNF142P52746 1687 aaPredicted RBP13.52□□□□□ -0.25
PDGFRA-202ENST00000461294 MROH2AA6NES4 1674 aa13.51□□□□□ -0.25
PDGFRA-202ENST00000461294 SENP3Q9H4L4 574 aaPredicted RBP13.5□□□□□ -0.25
PDGFRA-202ENST00000461294 MLH3Q9UHC1 1453 aa13.49□□□□□ -0.25
PDGFRA-202ENST00000461294 CEP170BQ9Y4F5 1589 aaPredicted RBP13.49□□□□□ -0.25
PDGFRA-202ENST00000461294 ABCA6Q8N139 1617 aa13.48□□□□□ -0.25
PDGFRA-202ENST00000461294 MYO5CQ9NQX4 1742 aa13.47□□□□□ -0.25
PDGFRA-202ENST00000461294 MYO3AQ8NEV4 1616 aa13.47□□□□□ -0.25
PDGFRA-202ENST00000461294 EHMT2Q96KQ7 1210 aa13.46□□□□□ -0.25
PDGFRA-202ENST00000461294 SETD1AO15047 1707 aaKnown RBP13.43□□□□□ -0.26
PDGFRA-202ENST00000461294 UPF1Q92900 1129 aaKnown RBP eCLIP13.43□□□□□ -0.26
PDGFRA-202ENST00000461294 POLR1AO95602 1720 aaPredicted RBP13.42□□□□□ -0.26
PDGFRA-202ENST00000461294 VWDEQ8N2E2 1590 aa13.41□□□□□ -0.26
PDGFRA-202ENST00000461294 LOC105371045A0A1W2PR82 267 aa13.41□□□□□ -0.26
PDGFRA-202ENST00000461294 SRCAPQ6ZRS2 3230 aa13.4□□□□□ -0.26
PDGFRA-202ENST00000461294 DNMT1P26358 1616 aaKnown RBP13.4□□□□□ -0.26
PDGFRA-202ENST00000461294 A2ML1A8K2U0 1454 aa13.4□□□□□ -0.26
PDGFRA-202ENST00000461294 NEURL4Q96JN8 1562 aa13.4□□□□□ -0.26
PDGFRA-202ENST00000461294 ARHGAP5Q13017 1502 aa13.39□□□□□ -0.27
PDGFRA-202ENST00000461294 KIDINS220Q9ULH0 1771 aa13.38□□□□□ -0.27
PDGFRA-202ENST00000461294 CLTCQ00610 1675 aaKnown RBP13.38□□□□□ -0.27
PDGFRA-202ENST00000461294 ANKLE2Q86XL3 938 aa13.38□□□□□ -0.27
PDGFRA-202ENST00000461294 CDK13Q14004 1512 aaKnown RBP13.38□□□□□ -0.27
PDGFRA-202ENST00000461294 RNF17Q9BXT8 1623 aaKnown RBP13.35□□□□□ -0.27
PDGFRA-202ENST00000461294 LRRC7Q96NW7 1537 aa13.35□□□□□ -0.27
PDGFRA-202ENST00000461294 CDK11AQ9UQ88 783 aaPredicted RBP13.35□□□□□ -0.27
PDGFRA-202ENST00000461294 RANGAP1P46060 587 aaPredicted RBP13.34□□□□□ -0.27
PDGFRA-202ENST00000461294 CLIP1P30622 1438 aa13.33□□□□□ -0.28
PDGFRA-202ENST00000461294 STRCP1A6NGW2 1772 aa13.32□□□□□ -0.28
PDGFRA-202ENST00000461294 MED14O60244 1454 aa13.32□□□□□ -0.28
PDGFRA-202ENST00000461294 CDC42BPBQ9Y5S2 1711 aa13.32□□□□□ -0.28
PDGFRA-202ENST00000461294 KIF14Q15058 1648 aa13.31□□□□□ -0.28
PDGFRA-202ENST00000461294 CEP162Q5TB80 1403 aa13.31□□□□□ -0.28
PDGFRA-202ENST00000461294 THEMISQ8N1K5 641 aaPredicted RBP13.31□□□□□ -0.28
PDGFRA-202ENST00000461294 NPHP4O75161 1426 aaPredicted RBP13.3□□□□□ -0.28
PDGFRA-202ENST00000461294 FAM135BQ49AJ0 1406 aa13.3□□□□□ -0.28
PDGFRA-202ENST00000461294 ITSN2Q9NZM3 1697 aa13.3□□□□□ -0.28
PDGFRA-202ENST00000461294 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.3□□□□□ -0.28
PDGFRA-202ENST00000461294 ABCC1P33527 1531 aa13.29□□□□□ -0.28
PDGFRA-202ENST00000461294 SYNMO15061 1565 aa13.29□□□□□ -0.28
PDGFRA-202ENST00000461294 GGT6Q6P531 493 aa13.29□□□□□ -0.28
PDGFRA-202ENST00000461294 DEPDC5O75140 1603 aa13.28□□□□□ -0.28
PDGFRA-202ENST00000461294 ARHGAP35Q9NRY4 1499 aa13.28□□□□□ -0.28
PDGFRA-202ENST00000461294 IQGAP1P46940 1657 aa13.26□□□□□ -0.29
PDGFRA-202ENST00000461294 TROQ12816 1431 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms