RNA–Protein interactions for RNA: ENST00000461127.5

TOP3A-202, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 3

Gene TOP3A, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-202ENST00000461127 DMRT2Q9Y5R5 561 aa28.96■■■□□ 2.23
TOP3A-202ENST00000461127 PREX1Q8TCU6 1659 aa28.96■■■□□ 2.23
TOP3A-202ENST00000461127 ATP10AO60312 1499 aa28.95■■■□□ 2.22
TOP3A-202ENST00000461127 DISP3Q9P2K9 1392 aa28.94■■■□□ 2.22
TOP3A-202ENST00000461127 ARHGEF12Q9NZN5 1544 aa28.94■■■□□ 2.22
TOP3A-202ENST00000461127 PLCH2O75038 1416 aa28.94■■■□□ 2.22
TOP3A-202ENST00000461127 EEA1Q15075 1411 aa28.93■■■□□ 2.22
TOP3A-202ENST00000461127 C9orf84Q5VXU9 1444 aa28.93■■■□□ 2.22
TOP3A-202ENST00000461127 CDK13Q14004 1512 aaKnown RBP28.89■■■□□ 2.21
TOP3A-202ENST00000461127 EFCAB2Q5VUJ9 269 aa28.88■■■□□ 2.21
TOP3A-202ENST00000461127 CEBPAP49715 358 aaPredicted RBP28.86■■■□□ 2.21
TOP3A-202ENST00000461127 UHRF1BP1Q6BDS2 1440 aa28.84■■■□□ 2.21
TOP3A-202ENST00000461127 SOCS7O14512 581 aa28.83■■■□□ 2.21
TOP3A-202ENST00000461127 ILDR2Q71H61 639 aa28.82■■■□□ 2.2
TOP3A-202ENST00000461127 MYO5CQ9NQX4 1742 aa28.82■■■□□ 2.2
TOP3A-202ENST00000461127 SETD1BQ9UPS6 1966 aaKnown RBP28.82■■■□□ 2.2
TOP3A-202ENST00000461127 CDK11AQ9UQ88 783 aaPredicted RBP28.8■■■□□ 2.2
TOP3A-202ENST00000461127 STRCQ7RTU9 1775 aa28.8■■■□□ 2.2
TOP3A-202ENST00000461127 ZNF518AQ6AHZ1 1483 aa28.79■■■□□ 2.2
TOP3A-202ENST00000461127 ATP1B4Q9UN42 357 aaPredicted RBP28.79■■■□□ 2.2
TOP3A-202ENST00000461127 MYT1LQ9UL68 1186 aa28.78■■■□□ 2.2
TOP3A-202ENST00000461127 FMN1Q68DA7 1419 aa28.72■■■□□ 2.19
TOP3A-202ENST00000461127 PTPRTO14522 1441 aa28.71■■■□□ 2.19
TOP3A-202ENST00000461127 ARHGAP5Q13017 1502 aa28.71■■■□□ 2.19
TOP3A-202ENST00000461127 AFAP1Q8N556 730 aa28.71■■■□□ 2.19
TOP3A-202ENST00000461127 ESF1Q9H501 851 aaKnown RBP28.71■■■□□ 2.19
TOP3A-202ENST00000461127 KDM5CP41229 1560 aa28.71■■■□□ 2.19
TOP3A-202ENST00000461127 KIF14Q15058 1648 aa28.7■■■□□ 2.19
TOP3A-202ENST00000461127 SPATA31D1Q6ZQQ2 1576 aa28.67■■■□□ 2.18
TOP3A-202ENST00000461127 REREQ9P2R6 1566 aa28.66■■■□□ 2.18
TOP3A-202ENST00000461127 CLIP1P30622 1438 aa28.65■■■□□ 2.18
TOP3A-202ENST00000461127 DIP2CQ9Y2E4 1556 aa28.65■■■□□ 2.18
TOP3A-202ENST00000461127 TROQ12816 1431 aaPredicted RBP28.64■■■□□ 2.18
TOP3A-202ENST00000461127 C3P01024 1663 aa28.63■■■□□ 2.17
TOP3A-202ENST00000461127 TRAPPC8Q9Y2L5 1435 aa28.6■■■□□ 2.17
TOP3A-202ENST00000461127 MLH3Q9UHC1 1453 aa28.6■■■□□ 2.17
TOP3A-202ENST00000461127 UBTFP17480 764 aaKnown RBP28.59■■■□□ 2.17
TOP3A-202ENST00000461127 IQSEC2Q5JU85 1478 aa28.59■■■□□ 2.17
TOP3A-202ENST00000461127 ABCA6Q8N139 1617 aa28.58■■■□□ 2.17
TOP3A-202ENST00000461127 AGLP35573 1532 aa28.57■■■□□ 2.16
TOP3A-202ENST00000461127 LTBP4Q8N2S1 1624 aa28.56■■■□□ 2.16
TOP3A-202ENST00000461127 CNTLNQ9NXG0 1405 aa28.54■■■□□ 2.16
TOP3A-202ENST00000461127 ARHGAP35Q9NRY4 1499 aa28.53■■■□□ 2.16
TOP3A-202ENST00000461127 NCOA1Q15788 1441 aa28.52■■■□□ 2.16
TOP3A-202ENST00000461127 CDC42BPBQ9Y5S2 1711 aa28.52■■■□□ 2.16
TOP3A-202ENST00000461127 EHMT2Q96KQ7 1210 aa28.5■■■□□ 2.15
TOP3A-202ENST00000461127 ABCC1P33527 1531 aa28.48■■■□□ 2.15
TOP3A-202ENST00000461127 PREX2Q70Z35 1606 aa28.47■■■□□ 2.15
TOP3A-202ENST00000461127 ITSN2Q9NZM3 1697 aa28.45■■■□□ 2.14
TOP3A-202ENST00000461127 NPATQ14207 1427 aa28.44■■■□□ 2.14
TOP3A-202ENST00000461127 CAMSAP1Q5T5Y3 1602 aa28.43■■■□□ 2.14
TOP3A-202ENST00000461127 KIDINS220Q9ULH0 1771 aa28.42■■■□□ 2.14
TOP3A-202ENST00000461127 LRRIQ1Q96JM4 1722 aa28.41■■■□□ 2.14
TOP3A-202ENST00000461127 MROH2AA6NES4 1674 aa28.39■■■□□ 2.14
TOP3A-202ENST00000461127 UBAP1LF5GYI3 381 aa28.38■■■□□ 2.13
TOP3A-202ENST00000461127 CCDC18Q5T9S5 1454 aa28.38■■■□□ 2.13
TOP3A-202ENST00000461127 ZMYM3Q14202 1370 aa28.37■■■□□ 2.13
TOP3A-202ENST00000461127 NCKAP5LQ9HCH0 1330 aa28.35■■■□□ 2.13
TOP3A-202ENST00000461127 ZNF335Q9H4Z2 1342 aaPredicted RBP28.34■■■□□ 2.13
TOP3A-202ENST00000461127 PKD2Q13563 968 aa28.33■■■□□ 2.13
TOP3A-202ENST00000461127 SAMD9LQ8IVG5 1584 aa28.32■■■□□ 2.12
TOP3A-202ENST00000461127 ZNF777Q9ULD5 760 aaPredicted RBP28.31■■■□□ 2.12
TOP3A-202ENST00000461127 SPAG9O60271 1321 aaKnown RBP28.31■■■□□ 2.12
TOP3A-202ENST00000461127 CDC42BPAQ5VT25 1732 aa28.31■■■□□ 2.12
TOP3A-202ENST00000461127 PLA2R1Q13018 1463 aa28.29■■■□□ 2.12
TOP3A-202ENST00000461127 CASKIN1Q8WXD9 1431 aa28.29■■■□□ 2.12
TOP3A-202ENST00000461127 SUPT6HQ7KZ85 1726 aaKnown RBP28.27■■■□□ 2.12
TOP3A-202ENST00000461127 ZNF142P52746 1687 aaPredicted RBP28.26■■■□□ 2.11
TOP3A-202ENST00000461127 MYO3AQ8NEV4 1616 aa28.25■■■□□ 2.11
TOP3A-202ENST00000461127 SYCP2Q9BX26 1530 aa28.24■■■□□ 2.11
TOP3A-202ENST00000461127 CLTCQ00610 1675 aaKnown RBP28.24■■■□□ 2.11
TOP3A-202ENST00000461127 CEP170BQ9Y4F5 1589 aaPredicted RBP28.23■■■□□ 2.11
TOP3A-202ENST00000461127 TCOF1Q13428 1488 aaKnown RBP28.21■■■□□ 2.11
TOP3A-202ENST00000461127 HNRNPMP52272 730 aaKnown RBP eCLIP28.21■■■□□ 2.11
TOP3A-202ENST00000461127 PPP6R1Q9UPN7 881 aa28.21■■■□□ 2.11
TOP3A-202ENST00000461127 ATP7AQ04656 1500 aa28.21■■■□□ 2.11
TOP3A-202ENST00000461127 PTPRKQ15262 1439 aa28.19■■■□□ 2.1
TOP3A-202ENST00000461127 GGT6Q6P531 493 aa28.19■■■□□ 2.1
TOP3A-202ENST00000461127 A2MP01023 1474 aa28.19■■■□□ 2.1
TOP3A-202ENST00000461127 PLXNC1O60486 1568 aa28.17■■■□□ 2.1
TOP3A-202ENST00000461127 PLEKHH2Q8IVE3 1493 aa28.17■■■□□ 2.1
TOP3A-202ENST00000461127 GPATCH8Q9UKJ3 1502 aaKnown RBP28.17■■■□□ 2.1
TOP3A-202ENST00000461127 KIAA1107Q9UPP5 1409 aa28.17■■■□□ 2.1
TOP3A-202ENST00000461127 FYCO1Q9BQS8 1478 aa28.15■■■□□ 2.1
TOP3A-202ENST00000461127 SCAF1Q9H7N4 1312 aaKnown RBP28.15■■■□□ 2.1
TOP3A-202ENST00000461127 CFDP1Q9UEE9 299 aaPredicted RBP28.14■■■□□ 2.1
TOP3A-202ENST00000461127 INO80Q9ULG1 1556 aaPredicted RBP28.13■■■□□ 2.09
TOP3A-202ENST00000461127 A2ML1A8K2U0 1454 aa28.09■■■□□ 2.09
TOP3A-202ENST00000461127 TOM1O60784 492 aa28.09■■■□□ 2.09
TOP3A-202ENST00000461127 HSPA1LP34931 641 aa28.08■■■□□ 2.09
TOP3A-202ENST00000461127 PIP4K2BP78356 416 aa28.08■■■□□ 2.09
TOP3A-202ENST00000461127 CCNB3Q8WWL7 1395 aa28.08■■■□□ 2.09
TOP3A-202ENST00000461127 ADGBQ8N7X0 1667 aa28.07■■■□□ 2.08
TOP3A-202ENST00000461127 DNMT1P26358 1616 aaKnown RBP28.05■■■□□ 2.08
TOP3A-202ENST00000461127 CPS1P31327 1500 aa28.05■■■□□ 2.08
TOP3A-202ENST00000461127 MED1Q15648 1581 aaPredicted RBP28.05■■■□□ 2.08
TOP3A-202ENST00000461127 POLR1AO95602 1720 aaPredicted RBP28.01■■■□□ 2.07
TOP3A-202ENST00000461127 SHANK2Q9UPX8 1470 aa27.99■■■□□ 2.07
TOP3A-202ENST00000461127 MTUS2Q5JR59 1369 aa27.97■■■□□ 2.07
TOP3A-202ENST00000461127 TNRQ92752 1358 aa27.97■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms