RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 PLEKHD1A6NEE1 506 aa20.12■□□□□ 0.81
PTPRN-210ENST00000460801 MIER1Q8N108 512 aa20.11■□□□□ 0.81
PTPRN-210ENST00000460801 CFDP1Q9UEE9 299 aaPredicted RBP20.11■□□□□ 0.81
PTPRN-210ENST00000460801 CAMSAP2Q08AD1 1489 aa20.11■□□□□ 0.81
PTPRN-210ENST00000460801 PPP1R15AO75807 674 aaPredicted RBP20.09■□□□□ 0.81
PTPRN-210ENST00000460801 ABCC10Q5T3U5 1492 aa20.09■□□□□ 0.81
PTPRN-210ENST00000460801 ACIN1Q9UKV3 1341 aaKnown RBP20.08■□□□□ 0.8
PTPRN-210ENST00000460801 DENND4BO75064 1496 aaPredicted RBP20.07■□□□□ 0.8
PTPRN-210ENST00000460801 CDC42BPAQ5VT25 1732 aa20.05■□□□□ 0.8
PTPRN-210ENST00000460801 TRIM52Q96A61 297 aa20.04■□□□□ 0.8
PTPRN-210ENST00000460801 TONSLQ96HA7 1378 aa20.04■□□□□ 0.8
PTPRN-210ENST00000460801 CROCC2H7BZ55 1655 aa20.02■□□□□ 0.79
PTPRN-210ENST00000460801 MPHOSPH9Q99550 1183 aa20.01■□□□□ 0.79
PTPRN-210ENST00000460801 ADGBQ8N7X0 1667 aa20.01■□□□□ 0.79
PTPRN-210ENST00000460801 ADGRL2O95490 1459 aa20.01■□□□□ 0.79
PTPRN-210ENST00000460801 ERCC6L2Q5T890 1561 aa20■□□□□ 0.79
PTPRN-210ENST00000460801 CLASP1Q7Z460 1538 aa20■□□□□ 0.79
PTPRN-210ENST00000460801 NCOA1Q15788 1441 aa20■□□□□ 0.79
PTPRN-210ENST00000460801 ZNF777Q9ULD5 760 aaPredicted RBP19.99■□□□□ 0.79
PTPRN-210ENST00000460801 CENPBP07199 599 aaPredicted RBP19.98■□□□□ 0.79
PTPRN-210ENST00000460801 KDM5BQ9UGL1 1544 aa19.96■□□□□ 0.79
PTPRN-210ENST00000460801 ABCC2Q92887 1545 aa19.95■□□□□ 0.78
PTPRN-210ENST00000460801 SHANK2Q9UPX8 1470 aa19.93■□□□□ 0.78
PTPRN-210ENST00000460801 ANKRD30AQ9BXX3 1397 aa19.93■□□□□ 0.78
PTPRN-210ENST00000460801 PREX2Q70Z35 1606 aa19.9■□□□□ 0.78
PTPRN-210ENST00000460801 ANKRD30BQ9BXX2 1392 aa19.9■□□□□ 0.78
PTPRN-210ENST00000460801 CDC42BPBQ9Y5S2 1711 aa19.9■□□□□ 0.78
PTPRN-210ENST00000460801 ARHGEF5Q12774 1597 aa19.9■□□□□ 0.78
PTPRN-210ENST00000460801 SCAF1Q9H7N4 1312 aaKnown RBP19.89■□□□□ 0.77
PTPRN-210ENST00000460801 C9orf84Q5VXU9 1444 aa19.88■□□□□ 0.77
PTPRN-210ENST00000460801 PZPP20742 1482 aa19.88■□□□□ 0.77
PTPRN-210ENST00000460801 MBD5Q9P267 1494 aa19.87■□□□□ 0.77
PTPRN-210ENST00000460801 UHRF1BP1LA0JNW5 1464 aa19.87■□□□□ 0.77
PTPRN-210ENST00000460801 FOXD1Q16676 465 aa19.87■□□□□ 0.77
PTPRN-210ENST00000460801 SLC4A1APQ9BWU0 796 aaKnown RBP19.86■□□□□ 0.77
PTPRN-210ENST00000460801 SAMD9LQ8IVG5 1584 aa19.86■□□□□ 0.77
PTPRN-210ENST00000460801 ANKRD50Q9ULJ7 1429 aa19.85■□□□□ 0.77
PTPRN-210ENST00000460801 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.85■□□□□ 0.77
PTPRN-210ENST00000460801 RPRD2Q5VT52 1461 aaKnown RBP19.84■□□□□ 0.77
PTPRN-210ENST00000460801 TTC37Q6PGP7 1564 aa19.84■□□□□ 0.77
PTPRN-210ENST00000460801 TSPY4P0CV99 314 aa19.84■□□□□ 0.77
PTPRN-210ENST00000460801 TSPY10P0CW01 314 aa19.84■□□□□ 0.77
PTPRN-210ENST00000460801 HNRNPMP52272 730 aaKnown RBP eCLIP19.83■□□□□ 0.77
PTPRN-210ENST00000460801 YTHDC1Q96MU7 727 aaKnown RBP19.83■□□□□ 0.77
PTPRN-210ENST00000460801 RSPH4AQ5TD94 716 aa19.82■□□□□ 0.76
PTPRN-210ENST00000460801 ZCCHC11Q5TAX3 1644 aaKnown RBP19.81■□□□□ 0.76
PTPRN-210ENST00000460801 CCDC141Q6ZP82 1450 aa19.81■□□□□ 0.76
PTPRN-210ENST00000460801 L3MBTL2Q969R5 705 aa19.79■□□□□ 0.76
PTPRN-210ENST00000460801 HIRIP3Q9BW71 556 aaPredicted RBP19.79■□□□□ 0.76
PTPRN-210ENST00000460801 MYO5CQ9NQX4 1742 aa19.78■□□□□ 0.76
PTPRN-210ENST00000460801 DDX10Q13206 875 aaKnown RBP19.78■□□□□ 0.76
PTPRN-210ENST00000460801 KIAA1107Q9UPP5 1409 aa19.78■□□□□ 0.76
PTPRN-210ENST00000460801 ARHGAP5Q13017 1502 aa19.78■□□□□ 0.76
PTPRN-210ENST00000460801 TEX14Q8IWB6 1497 aa19.77■□□□□ 0.76
PTPRN-210ENST00000460801 KIF15Q9NS87 1388 aa19.77■□□□□ 0.75
PTPRN-210ENST00000460801 SYCP2Q9BX26 1530 aa19.75■□□□□ 0.75
PTPRN-210ENST00000460801 KDM5DQ9BY66 1539 aa19.75■□□□□ 0.75
PTPRN-210ENST00000460801 MAST1Q9Y2H9 1570 aa19.74■□□□□ 0.75
PTPRN-210ENST00000460801 PLEKHH2Q8IVE3 1493 aa19.74■□□□□ 0.75
PTPRN-210ENST00000460801 KCNH8Q96L42 1107 aa19.73■□□□□ 0.75
PTPRN-210ENST00000460801 PKD2Q13563 968 aa19.72■□□□□ 0.75
PTPRN-210ENST00000460801 PLCH2O75038 1416 aa19.72■□□□□ 0.75
PTPRN-210ENST00000460801 NUP155O75694 1391 aa19.72■□□□□ 0.75
PTPRN-210ENST00000460801 HSPA5P11021 654 aaKnown RBP19.67■□□□□ 0.74
PTPRN-210ENST00000460801 NBPF8Q3BBV2 869 aa19.67■□□□□ 0.74
PTPRN-210ENST00000460801 ARHGEF12Q9NZN5 1544 aa19.66■□□□□ 0.74
PTPRN-210ENST00000460801 GTF3C3Q9Y5Q9 886 aa19.66■□□□□ 0.74
PTPRN-210ENST00000460801 PLXNC1O60486 1568 aa19.66■□□□□ 0.74
PTPRN-210ENST00000460801 EIF4G2P78344 907 aaKnown RBP eCLIP19.66■□□□□ 0.74
PTPRN-210ENST00000460801 EFCAB2Q5VUJ9 269 aa19.65■□□□□ 0.74
PTPRN-210ENST00000460801 ARAP3Q8WWN8 1544 aa19.63■□□□□ 0.73
PTPRN-210ENST00000460801 ABCC1P33527 1531 aa19.62■□□□□ 0.73
PTPRN-210ENST00000460801 WDR7Q9Y4E6 1490 aa19.61■□□□□ 0.73
PTPRN-210ENST00000460801 FAM135AQ9P2D6 1515 aa19.6■□□□□ 0.73
PTPRN-210ENST00000460801 UNC13BO14795 1591 aa19.6■□□□□ 0.73
PTPRN-210ENST00000460801 WASHC2AQ641Q2 1341 aa19.58■□□□□ 0.73
PTPRN-210ENST00000460801 OSCARQ8IYS5 282 aa19.58■□□□□ 0.73
PTPRN-210ENST00000460801 DUOX2Q9NRD8 1548 aa19.58■□□□□ 0.73
PTPRN-210ENST00000460801 SPATA31E1Q6ZUB1 1445 aa19.57■□□□□ 0.72
PTPRN-210ENST00000460801 ANP32CO43423 234 aa19.57■□□□□ 0.72
PTPRN-210ENST00000460801 CCER2I3L3R5 266 aa19.56■□□□□ 0.72
PTPRN-210ENST00000460801 TRAPPC8Q9Y2L5 1435 aa19.55■□□□□ 0.72
PTPRN-210ENST00000460801 ERBINQ96RT1 1412 aa19.54■□□□□ 0.72
PTPRN-210ENST00000460801 ABCA9Q8IUA7 1624 aa19.54■□□□□ 0.72
PTPRN-210ENST00000460801 UHRF1BP1Q6BDS2 1440 aa19.53■□□□□ 0.72
PTPRN-210ENST00000460801 IQGAP3Q86VI3 1631 aa19.53■□□□□ 0.72
PTPRN-210ENST00000460801 MAGI2Q86UL8 1455 aa19.52■□□□□ 0.72
PTPRN-210ENST00000460801 RTEL1-TNFRSF6BF6WH68 1400 aa19.51■□□□□ 0.71
PTPRN-210ENST00000460801 ASXL2Q76L83 1435 aa19.5■□□□□ 0.71
PTPRN-210ENST00000460801 CCDC7Q96M83 1385 aa19.5■□□□□ 0.71
PTPRN-210ENST00000460801 C11orf95C9JLR9 678 aaPredicted RBP19.49■□□□□ 0.71
PTPRN-210ENST00000460801 FANCAO15360 1455 aa19.48■□□□□ 0.71
PTPRN-210ENST00000460801 POLR1AO95602 1720 aaPredicted RBP19.48■□□□□ 0.71
PTPRN-210ENST00000460801 SPAG9O60271 1321 aaKnown RBP19.48■□□□□ 0.71
PTPRN-210ENST00000460801 PLA2R1Q13018 1463 aa19.47■□□□□ 0.71
PTPRN-210ENST00000460801 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.47■□□□□ 0.71
PTPRN-210ENST00000460801 ZFYVE16Q7Z3T8 1539 aa19.47■□□□□ 0.71
PTPRN-210ENST00000460801 RALGAPBQ86X10 1494 aa19.46■□□□□ 0.71
PTPRN-210ENST00000460801 AFAP1Q8N556 730 aa19.46■□□□□ 0.71
PTPRN-210ENST00000460801 CNTLNQ9NXG0 1405 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms