RNA–Protein interactions for RNA: ENST00000459918.1

HPS4-207, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-207ENST00000459918 CSRNP3Q8WYN3 585 aa13.28□□□□□ -0.28
HPS4-207ENST00000459918 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.28□□□□□ -0.28
HPS4-207ENST00000459918 ZMYM4Q5VZL5 1548 aa13.26□□□□□ -0.29
HPS4-207ENST00000459918 SIGLEC1Q9BZZ2 1709 aa13.25□□□□□ -0.29
HPS4-207ENST00000459918 MYO5CQ9NQX4 1742 aa13.24□□□□□ -0.29
HPS4-207ENST00000459918 PREX1Q8TCU6 1659 aa13.24□□□□□ -0.29
HPS4-207ENST00000459918 HECW1Q76N89 1606 aa13.24□□□□□ -0.29
HPS4-207ENST00000459918 YEATS2Q9ULM3 1422 aa13.23□□□□□ -0.29
HPS4-207ENST00000459918 ATP1B4Q9UN42 357 aaPredicted RBP13.23□□□□□ -0.29
HPS4-207ENST00000459918 CDK13Q14004 1512 aaKnown RBP13.22□□□□□ -0.29
HPS4-207ENST00000459918 MAGI2Q86UL8 1455 aa13.22□□□□□ -0.29
HPS4-207ENST00000459918 MYT1LQ9UL68 1186 aa13.21□□□□□ -0.29
HPS4-207ENST00000459918 EEA1Q15075 1411 aa13.21□□□□□ -0.3
HPS4-207ENST00000459918 CERKQ8TCT0 537 aa13.2□□□□□ -0.3
HPS4-207ENST00000459918 SCAPERQ9BY12 1400 aa13.19□□□□□ -0.3
HPS4-207ENST00000459918 C9orf84Q5VXU9 1444 aa13.17□□□□□ -0.3
HPS4-207ENST00000459918 EHMT2Q96KQ7 1210 aa13.17□□□□□ -0.3
HPS4-207ENST00000459918 KIF14Q15058 1648 aa13.17□□□□□ -0.3
HPS4-207ENST00000459918 ATP10AO60312 1499 aa13.16□□□□□ -0.3
HPS4-207ENST00000459918 PLCH2O75038 1416 aa13.15□□□□□ -0.3
HPS4-207ENST00000459918 ARHGAP5Q13017 1502 aa13.15□□□□□ -0.3
HPS4-207ENST00000459918 ARHGEF12Q9NZN5 1544 aa13.14□□□□□ -0.31
HPS4-207ENST00000459918 DISP3Q9P2K9 1392 aa13.14□□□□□ -0.31
HPS4-207ENST00000459918 ZNF518AQ6AHZ1 1483 aa13.13□□□□□ -0.31
HPS4-207ENST00000459918 CDK11AQ9UQ88 783 aaPredicted RBP13.13□□□□□ -0.31
HPS4-207ENST00000459918 UHRF1BP1Q6BDS2 1440 aa13.13□□□□□ -0.31
HPS4-207ENST00000459918 CEBPAP49715 358 aaPredicted RBP13.12□□□□□ -0.31
HPS4-207ENST00000459918 EFCAB2Q5VUJ9 269 aa13.12□□□□□ -0.31
HPS4-207ENST00000459918 ESF1Q9H501 851 aaKnown RBP13.12□□□□□ -0.31
HPS4-207ENST00000459918 DMRT2Q9Y5R5 561 aa13.12□□□□□ -0.31
HPS4-207ENST00000459918 FMN1Q68DA7 1419 aa13.12□□□□□ -0.31
HPS4-207ENST00000459918 UBTFP17480 764 aaKnown RBP13.11□□□□□ -0.31
HPS4-207ENST00000459918 STRCQ7RTU9 1775 aa13.11□□□□□ -0.31
HPS4-207ENST00000459918 CLIP1P30622 1438 aa13.11□□□□□ -0.31
HPS4-207ENST00000459918 C3P01024 1663 aa13.09□□□□□ -0.31
HPS4-207ENST00000459918 DIP2CQ9Y2E4 1556 aa13.08□□□□□ -0.32
HPS4-207ENST00000459918 KDM5CP41229 1560 aa13.07□□□□□ -0.32
HPS4-207ENST00000459918 SPATA31D1Q6ZQQ2 1576 aa13.07□□□□□ -0.32
HPS4-207ENST00000459918 ABCA6Q8N139 1617 aa13.07□□□□□ -0.32
HPS4-207ENST00000459918 LRRIQ1Q96JM4 1722 aa13.06□□□□□ -0.32
HPS4-207ENST00000459918 CDC42BPBQ9Y5S2 1711 aa13.06□□□□□ -0.32
HPS4-207ENST00000459918 SETD1BQ9UPS6 1966 aaKnown RBP13.05□□□□□ -0.32
HPS4-207ENST00000459918 AFAP1Q8N556 730 aa13.05□□□□□ -0.32
HPS4-207ENST00000459918 PREX2Q70Z35 1606 aa13.05□□□□□ -0.32
HPS4-207ENST00000459918 ITSN2Q9NZM3 1697 aa13.05□□□□□ -0.32
HPS4-207ENST00000459918 TROQ12816 1431 aaPredicted RBP13.05□□□□□ -0.32
HPS4-207ENST00000459918 REREQ9P2R6 1566 aa13.03□□□□□ -0.32
HPS4-207ENST00000459918 SUPT6HQ7KZ85 1726 aaKnown RBP13.03□□□□□ -0.32
HPS4-207ENST00000459918 ARHGAP35Q9NRY4 1499 aa13.03□□□□□ -0.32
HPS4-207ENST00000459918 ABCC1P33527 1531 aa13.02□□□□□ -0.33
HPS4-207ENST00000459918 ILDR2Q71H61 639 aa13□□□□□ -0.33
HPS4-207ENST00000459918 MLH3Q9UHC1 1453 aa12.99□□□□□ -0.33
HPS4-207ENST00000459918 PTPRTO14522 1441 aa12.99□□□□□ -0.33
HPS4-207ENST00000459918 SOCS7O14512 581 aa12.99□□□□□ -0.33
HPS4-207ENST00000459918 CDC42BPAQ5VT25 1732 aa12.99□□□□□ -0.33
HPS4-207ENST00000459918 KIDINS220Q9ULH0 1771 aa12.98□□□□□ -0.33
HPS4-207ENST00000459918 AGLP35573 1532 aa12.98□□□□□ -0.33
HPS4-207ENST00000459918 CCDC18Q5T9S5 1454 aa12.97□□□□□ -0.33
HPS4-207ENST00000459918 CNTLNQ9NXG0 1405 aa12.97□□□□□ -0.33
HPS4-207ENST00000459918 TRAPPC8Q9Y2L5 1435 aa12.97□□□□□ -0.33
HPS4-207ENST00000459918 MROH2AA6NES4 1674 aa12.97□□□□□ -0.33
HPS4-207ENST00000459918 CAMSAP1Q5T5Y3 1602 aa12.97□□□□□ -0.33
HPS4-207ENST00000459918 ZNF777Q9ULD5 760 aaPredicted RBP12.96□□□□□ -0.33
HPS4-207ENST00000459918 CLTCQ00610 1675 aaKnown RBP12.96□□□□□ -0.34
HPS4-207ENST00000459918 NCOA1Q15788 1441 aa12.95□□□□□ -0.34
HPS4-207ENST00000459918 LTBP4Q8N2S1 1624 aa12.94□□□□□ -0.34
HPS4-207ENST00000459918 MYO3AQ8NEV4 1616 aa12.94□□□□□ -0.34
HPS4-207ENST00000459918 SYCP2Q9BX26 1530 aa12.93□□□□□ -0.34
HPS4-207ENST00000459918 IQSEC2Q5JU85 1478 aa12.93□□□□□ -0.34
HPS4-207ENST00000459918 MAPK8IP2Q13387 824 aaPredicted RBP12.92□□□□□ -0.34
HPS4-207ENST00000459918 SAMD9LQ8IVG5 1584 aa12.92□□□□□ -0.34
HPS4-207ENST00000459918 CASKIN1Q8WXD9 1431 aa12.91□□□□□ -0.34
HPS4-207ENST00000459918 ZNF142P52746 1687 aaPredicted RBP12.91□□□□□ -0.34
HPS4-207ENST00000459918 SPAG9O60271 1321 aaKnown RBP12.9□□□□□ -0.34
HPS4-207ENST00000459918 NPATQ14207 1427 aa12.9□□□□□ -0.34
HPS4-207ENST00000459918 ATP7AQ04656 1500 aa12.9□□□□□ -0.34
HPS4-207ENST00000459918 UBAP1LF5GYI3 381 aa12.9□□□□□ -0.34
HPS4-207ENST00000459918 CEP170BQ9Y4F5 1589 aaPredicted RBP12.89□□□□□ -0.35
HPS4-207ENST00000459918 SCAF1Q9H7N4 1312 aaKnown RBP12.88□□□□□ -0.35
HPS4-207ENST00000459918 NCKAP5LQ9HCH0 1330 aa12.88□□□□□ -0.35
HPS4-207ENST00000459918 ZMYM3Q14202 1370 aa12.88□□□□□ -0.35
HPS4-207ENST00000459918 FYCO1Q9BQS8 1478 aa12.88□□□□□ -0.35
HPS4-207ENST00000459918 ZNF335Q9H4Z2 1342 aaPredicted RBP12.88□□□□□ -0.35
HPS4-207ENST00000459918 INO80Q9ULG1 1556 aaPredicted RBP12.87□□□□□ -0.35
HPS4-207ENST00000459918 ADGBQ8N7X0 1667 aa12.86□□□□□ -0.35
HPS4-207ENST00000459918 GGT6Q6P531 493 aa12.86□□□□□ -0.35
HPS4-207ENST00000459918 A2MP01023 1474 aa12.85□□□□□ -0.35
HPS4-207ENST00000459918 HNRNPMP52272 730 aaKnown RBP eCLIP12.85□□□□□ -0.35
HPS4-207ENST00000459918 POLR1AO95602 1720 aaPredicted RBP12.85□□□□□ -0.35
HPS4-207ENST00000459918 PLEKHH2Q8IVE3 1493 aa12.85□□□□□ -0.35
HPS4-207ENST00000459918 PLXNC1O60486 1568 aa12.84□□□□□ -0.35
HPS4-207ENST00000459918 PLA2R1Q13018 1463 aa12.84□□□□□ -0.35
HPS4-207ENST00000459918 CCNB3Q8WWL7 1395 aa12.83□□□□□ -0.36
HPS4-207ENST00000459918 PKD2Q13563 968 aa12.83□□□□□ -0.36
HPS4-207ENST00000459918 CFDP1Q9UEE9 299 aaPredicted RBP12.83□□□□□ -0.36
HPS4-207ENST00000459918 GPATCH8Q9UKJ3 1502 aaKnown RBP12.83□□□□□ -0.36
HPS4-207ENST00000459918 PTPRKQ15262 1439 aa12.8□□□□□ -0.36
HPS4-207ENST00000459918 PIP4K2BP78356 416 aa12.8□□□□□ -0.36
HPS4-207ENST00000459918 MTUS2Q5JR59 1369 aa12.8□□□□□ -0.36
HPS4-207ENST00000459918 TCOF1Q13428 1488 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms