RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 WRNQ14191 1432 aaPredicted RBP eCLIP6.54□□□□□ -1.36
CSMD3-204ENST00000455883 HMGB1P1B2RPK0 211 aaPredicted RBP6.54□□□□□ -1.36
CSMD3-204ENST00000455883 CDR1P51861 262 aa6.54□□□□□ -1.36
CSMD3-204ENST00000455883 TEX35Q5T0J7 233 aa6.54□□□□□ -1.36
CSMD3-204ENST00000455883 HMMRO75330 724 aa6.54□□□□□ -1.36
CSMD3-204ENST00000455883 HMGN5P82970 282 aaKnown RBP6.54□□□□□ -1.36
CSMD3-204ENST00000455883 ACBD3Q9H3P7 528 aa6.54□□□□□ -1.36
CSMD3-204ENST00000455883 AK9Q5TCS8 1911 aa6.54□□□□□ -1.36
CSMD3-204ENST00000455883 CWC15Q9P013 229 aaKnown RBP6.54□□□□□ -1.36
CSMD3-204ENST00000455883 ANKRD30AQ9BXX3 1397 aa6.53□□□□□ -1.36
CSMD3-204ENST00000455883 NINLQ9Y2I6 1382 aa6.53□□□□□ -1.36
CSMD3-204ENST00000455883 LRRFIP1Q32MZ4 808 aaKnown RBP6.53□□□□□ -1.36
CSMD3-204ENST00000455883 CCDC18Q5T9S5 1454 aa6.53□□□□□ -1.36
CSMD3-204ENST00000455883 HDGFP51858 240 aaKnown RBP6.53□□□□□ -1.36
CSMD3-204ENST00000455883 BCANQ96GW7 911 aa6.53□□□□□ -1.36
CSMD3-204ENST00000455883 GPATCH3Q96I76 525 aa6.52□□□□□ -1.36
CSMD3-204ENST00000455883 TSPYL1Q9H0U9 437 aa6.52□□□□□ -1.36
CSMD3-204ENST00000455883 CCDC66A2RUB6 948 aa6.52□□□□□ -1.37
CSMD3-204ENST00000455883 ROCK1Q13464 1354 aa6.52□□□□□ -1.37
CSMD3-204ENST00000455883 RSPH4AQ5TD94 716 aa6.52□□□□□ -1.37
CSMD3-204ENST00000455883 MYH10P35580 1976 aa6.52□□□□□ -1.37
CSMD3-204ENST00000455883 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.52□□□□□ -1.37
CSMD3-204ENST00000455883 MAP1BP46821 2468 aaKnown RBP6.51□□□□□ -1.37
CSMD3-204ENST00000455883 CCP110O43303 1012 aa6.51□□□□□ -1.37
CSMD3-204ENST00000455883 SETD5Q9C0A6 1442 aa6.51□□□□□ -1.37
CSMD3-204ENST00000455883 HSP90AB1P08238 724 aaKnown RBP6.5□□□□□ -1.37
CSMD3-204ENST00000455883 FANCIQ9NVI1 1328 aa6.5□□□□□ -1.37
CSMD3-204ENST00000455883 HSP90AA2PQ14568 343 aaPredicted RBP6.5□□□□□ -1.37
CSMD3-204ENST00000455883 NBR1Q14596 966 aa6.5□□□□□ -1.37
CSMD3-204ENST00000455883 PRKCSHP14314 528 aaPredicted RBP6.5□□□□□ -1.37
CSMD3-204ENST00000455883 PMFBP1Q8TBY8 1022 aa6.5□□□□□ -1.37
CSMD3-204ENST00000455883 HMGB3O15347 200 aaKnown RBP6.5□□□□□ -1.37
CSMD3-204ENST00000455883 CACNA1FO60840 1977 aa6.5□□□□□ -1.37
CSMD3-204ENST00000455883 DCTN1Q14203 1278 aa6.5□□□□□ -1.37
CSMD3-204ENST00000455883 AEBP2Q6ZN18 517 aaPredicted RBP6.49□□□□□ -1.37
CSMD3-204ENST00000455883 KIF7Q2M1P5 1343 aa6.49□□□□□ -1.37
CSMD3-204ENST00000455883 TPM1P09493 284 aa6.49□□□□□ -1.37
CSMD3-204ENST00000455883 KIAA1211Q6ZU35 1233 aa6.49□□□□□ -1.37
CSMD3-204ENST00000455883 ARGLU1Q9NWB6 273 aaPredicted RBP6.49□□□□□ -1.37
CSMD3-204ENST00000455883 NPM1P06748 294 aaKnown RBP eCLIP6.49□□□□□ -1.37
CSMD3-204ENST00000455883 TXLNBQ8N3L3 684 aa6.49□□□□□ -1.37
CSMD3-204ENST00000455883 RDXP35241 583 aaKnown RBP6.49□□□□□ -1.37
CSMD3-204ENST00000455883 USP8P40818 1118 aa6.49□□□□□ -1.37
CSMD3-204ENST00000455883 LMOD3Q0VAK6 560 aa6.49□□□□□ -1.37
CSMD3-204ENST00000455883 ST18O60284 1047 aa6.49□□□□□ -1.37
CSMD3-204ENST00000455883 HOOK1Q9UJC3 728 aaKnown RBP6.49□□□□□ -1.37
CSMD3-204ENST00000455883 RWDD1Q9H446 243 aaPredicted RBP6.48□□□□□ -1.37
CSMD3-204ENST00000455883 NAP1L2Q9ULW6 460 aaPredicted RBP6.48□□□□□ -1.37
CSMD3-204ENST00000455883 MYO6Q9UM54 1294 aa6.48□□□□□ -1.37
CSMD3-204ENST00000455883 KIF21BO75037 1637 aa6.48□□□□□ -1.37
CSMD3-204ENST00000455883 KIF21AQ7Z4S6 1674 aa6.48□□□□□ -1.37
CSMD3-204ENST00000455883 TOP2AP11388 1531 aaKnown RBP6.47□□□□□ -1.37
CSMD3-204ENST00000455883 PLEKHH2Q8IVE3 1493 aa6.47□□□□□ -1.37
CSMD3-204ENST00000455883 IPO9Q96P70 1041 aaKnown RBP6.47□□□□□ -1.37
CSMD3-204ENST00000455883 RP1L1Q8IWN7 2480 aaPredicted RBP6.47□□□□□ -1.37
CSMD3-204ENST00000455883 STAG3Q9UJ98 1225 aa6.46□□□□□ -1.37
CSMD3-204ENST00000455883 PPARGC1BQ86YN6 1023 aaKnown RBP6.46□□□□□ -1.37
CSMD3-204ENST00000455883 ERCC4Q92889 916 aaPredicted RBP6.46□□□□□ -1.37
CSMD3-204ENST00000455883 CGNL1Q0VF96 1302 aa6.46□□□□□ -1.37
CSMD3-204ENST00000455883 FGD1P98174 961 aa6.46□□□□□ -1.37
CSMD3-204ENST00000455883 NOC3LQ8WTT2 800 aaKnown RBP6.46□□□□□ -1.37
CSMD3-204ENST00000455883 ERICH3Q5RHP9 1530 aa6.46□□□□□ -1.38
CSMD3-204ENST00000455883 PES1O00541 588 aaKnown RBP6.46□□□□□ -1.38
CSMD3-204ENST00000455883 FAM9BQ8IZU0 186 aa6.46□□□□□ -1.38
CSMD3-204ENST00000455883 HMGB2P26583 209 aaKnown RBP6.46□□□□□ -1.38
CSMD3-204ENST00000455883 IPO7O95373 1038 aaKnown RBP6.46□□□□□ -1.38
CSMD3-204ENST00000455883 CCDC7Q96M83 1385 aa6.46□□□□□ -1.38
CSMD3-204ENST00000455883 SUPT6HQ7KZ85 1726 aaKnown RBP6.45□□□□□ -1.38
CSMD3-204ENST00000455883 PDCL2Q8N4E4 241 aa6.45□□□□□ -1.38
CSMD3-204ENST00000455883 TMF1P82094 1093 aa6.45□□□□□ -1.38
CSMD3-204ENST00000455883 DDX10Q13206 875 aaKnown RBP6.45□□□□□ -1.38
CSMD3-204ENST00000455883 TSR1Q2NL82 804 aaKnown RBP6.45□□□□□ -1.38
CSMD3-204ENST00000455883 ANKRD20A12PQ8NF67 263 aa6.45□□□□□ -1.38
CSMD3-204ENST00000455883 ZBED9Q6R2W3 1325 aa6.45□□□□□ -1.38
CSMD3-204ENST00000455883 DIAPH3Q9NSV4 1193 aa6.45□□□□□ -1.38
CSMD3-204ENST00000455883 CNTLNQ9NXG0 1405 aa6.45□□□□□ -1.38
CSMD3-204ENST00000455883 CNTRLQ7Z7A1 2325 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 HSP90B1P14625 803 aaKnown RBP6.44□□□□□ -1.38
CSMD3-204ENST00000455883 TPM2P07951 284 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 PRDM2Q13029 1718 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 WASHC2AQ641Q2 1341 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 WASHC2CQ9Y4E1 1318 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 FAM107BQ9H098 131 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 INCENPQ9NQS7 918 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 PLPPR3Q6T4P5 718 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 REC8O95072 547 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 CARMIL2Q6F5E8 1435 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 AKNAQ7Z591 1439 aa6.44□□□□□ -1.38
CSMD3-204ENST00000455883 POLR3GO15318 223 aaPredicted RBP6.43□□□□□ -1.38
CSMD3-204ENST00000455883 LETM1O95202 739 aaPredicted RBP6.43□□□□□ -1.38
CSMD3-204ENST00000455883 KIF2AO00139 706 aaPredicted RBP6.43□□□□□ -1.38
CSMD3-204ENST00000455883 MIA2Q96PC5 1412 aa6.43□□□□□ -1.38
CSMD3-204ENST00000455883 GOLGA6L7A0A1B0GV03 622 aa6.43□□□□□ -1.38
CSMD3-204ENST00000455883 NAT10Q9H0A0 1025 aaKnown RBP6.43□□□□□ -1.38
CSMD3-204ENST00000455883 MCM2P49736 904 aa6.43□□□□□ -1.38
CSMD3-204ENST00000455883 DRC7Q8IY82 874 aa6.43□□□□□ -1.38
CSMD3-204ENST00000455883 EFCAB5A4FU69 1503 aa6.43□□□□□ -1.38
CSMD3-204ENST00000455883 KIF15Q9NS87 1388 aa6.43□□□□□ -1.38
CSMD3-204ENST00000455883 KCNJ4P48050 445 aa6.42□□□□□ -1.38
CSMD3-204ENST00000455883 CENPQQ7L2Z9 268 aaPredicted RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms