RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 NBPF8Q3BBV2 869 aa16.47■□□□□ 0.23
SMPD4-213ENST00000454468 NUP155O75694 1391 aa16.47■□□□□ 0.23
SMPD4-213ENST00000454468 IFT140Q96RY7 1462 aa16.47■□□□□ 0.23
SMPD4-213ENST00000454468 WASHC2AQ641Q2 1341 aa16.46■□□□□ 0.23
SMPD4-213ENST00000454468 CARD11Q9BXL7 1154 aa16.46■□□□□ 0.23
SMPD4-213ENST00000454468 EHBP1L1Q8N3D4 1523 aa16.46■□□□□ 0.22
SMPD4-213ENST00000454468 THOC2Q8NI27 1593 aaKnown RBP16.45■□□□□ 0.22
SMPD4-213ENST00000454468 SUPT6HQ7KZ85 1726 aaKnown RBP16.45■□□□□ 0.22
SMPD4-213ENST00000454468 CFAP43Q8NDM7 1665 aa16.44■□□□□ 0.22
SMPD4-213ENST00000454468 ABCA5Q8WWZ7 1642 aa16.43■□□□□ 0.22
SMPD4-213ENST00000454468 PTPN23Q9H3S7 1636 aa16.43■□□□□ 0.22
SMPD4-213ENST00000454468 C11orf95C9JLR9 678 aaPredicted RBP16.43■□□□□ 0.22
SMPD4-213ENST00000454468 MAGI3Q5TCQ9 1506 aa16.43■□□□□ 0.22
SMPD4-213ENST00000454468 CCDC184Q52MB2 194 aa16.43■□□□□ 0.22
SMPD4-213ENST00000454468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.42■□□□□ 0.224e-10■■■■■ 33.4
SMPD4-213ENST00000454468 CCER2I3L3R5 266 aa16.41■□□□□ 0.22
SMPD4-213ENST00000454468 KIAA0586Q9BVV6 1533 aa16.41■□□□□ 0.22
SMPD4-213ENST00000454468 HECW1Q76N89 1606 aa16.39■□□□□ 0.21
SMPD4-213ENST00000454468 GRIN2AQ12879 1464 aa16.39■□□□□ 0.21
SMPD4-213ENST00000454468 PTPRGP23470 1445 aa16.39■□□□□ 0.21
SMPD4-213ENST00000454468 ANKRD30AQ9BXX3 1397 aa16.38■□□□□ 0.21
SMPD4-213ENST00000454468 TMC1Q8TDI8 760 aa16.37■□□□□ 0.21
SMPD4-213ENST00000454468 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
SMPD4-213ENST00000454468 DAPK1P53355 1430 aa16.37■□□□□ 0.21
SMPD4-213ENST00000454468 CHGAP10645 457 aaKnown RBP16.35■□□□□ 0.21
SMPD4-213ENST00000454468 ABCC5O15440 1437 aa16.35■□□□□ 0.21
SMPD4-213ENST00000454468 UGGT2Q9NYU1 1516 aa16.35■□□□□ 0.21
SMPD4-213ENST00000454468 PRKCSHP14314 528 aaPredicted RBP16.34■□□□□ 0.21
SMPD4-213ENST00000454468 NUP153P49790 1475 aaKnown RBP16.33■□□□□ 0.2
SMPD4-213ENST00000454468 SAMD9Q5K651 1589 aa16.33■□□□□ 0.2
SMPD4-213ENST00000454468 MIA2Q96PC5 1412 aa16.33■□□□□ 0.2
SMPD4-213ENST00000454468 ADAMTS12P58397 1594 aa16.32■□□□□ 0.2
SMPD4-213ENST00000454468 TROQ12816 1431 aaPredicted RBP16.32■□□□□ 0.2
SMPD4-213ENST00000454468 ST20-MTHFSA0A0A6YYL1 179 aa16.31■□□□□ 0.2
SMPD4-213ENST00000454468 PRKRIP1Q9H875 184 aaPredicted RBP16.31■□□□□ 0.2
SMPD4-213ENST00000454468 KIF7Q2M1P5 1343 aa16.31■□□□□ 0.2
SMPD4-213ENST00000454468 PBRM1Q86U86 1689 aa16.29■□□□□ 0.2
SMPD4-213ENST00000454468 ANKRD50Q9ULJ7 1429 aa16.29■□□□□ 0.2
SMPD4-213ENST00000454468 DISP1Q96F81 1524 aa16.29■□□□□ 0.2
SMPD4-213ENST00000454468 TSHZ2Q9NRE2 1034 aa16.28■□□□□ 0.2
SMPD4-213ENST00000454468 ARHGEF11O15085 1522 aa16.28■□□□□ 0.2
SMPD4-213ENST00000454468 CC2D1BQ5T0F9 858 aaKnown RBP16.27■□□□□ 0.2
SMPD4-213ENST00000454468 SYNJ2O15056 1496 aa16.27■□□□□ 0.19
SMPD4-213ENST00000454468 CCDC7Q96M83 1385 aa16.26■□□□□ 0.19
SMPD4-213ENST00000454468 ANKRD30BQ9BXX2 1392 aa16.26■□□□□ 0.19
SMPD4-213ENST00000454468 KIF15Q9NS87 1388 aa16.26■□□□□ 0.19
SMPD4-213ENST00000454468 ERICH6Q7L0X2 663 aa16.26■□□□□ 0.19
SMPD4-213ENST00000454468 KDM6BO15054 1643 aa16.26■□□□□ 0.19
SMPD4-213ENST00000454468 WDR62O43379 1518 aa16.25■□□□□ 0.19
SMPD4-213ENST00000454468 B4GALNT3Q6L9W6 998 aa16.25■□□□□ 0.19
SMPD4-213ENST00000454468 USP47Q96K76 1375 aa16.24■□□□□ 0.19
SMPD4-213ENST00000454468 EIF4G3O43432 1585 aaKnown RBP16.24■□□□□ 0.19
SMPD4-213ENST00000454468 CAMSAP2Q08AD1 1489 aa16.23■□□□□ 0.19
SMPD4-213ENST00000454468 NCOA1Q15788 1441 aa16.22■□□□□ 0.19
SMPD4-213ENST00000454468 ROCK2O75116 1388 aaKnown RBP16.21■□□□□ 0.19
SMPD4-213ENST00000454468 KIAA0556O60303 1618 aa16.21■□□□□ 0.19
SMPD4-213ENST00000454468 AFAP1Q8N556 730 aa16.21■□□□□ 0.19
SMPD4-213ENST00000454468 GPATCH8Q9UKJ3 1502 aaKnown RBP16.21■□□□□ 0.19
SMPD4-213ENST00000454468 LRRIQ1Q96JM4 1722 aa16.21■□□□□ 0.18
SMPD4-213ENST00000454468 NBPF1Q3BBV0 1214 aa16.2■□□□□ 0.18
SMPD4-213ENST00000454468 C9orf84Q5VXU9 1444 aa16.19■□□□□ 0.18
SMPD4-213ENST00000454468 MAGI1Q96QZ7 1491 aaPredicted RBP16.19■□□□□ 0.18
SMPD4-213ENST00000454468 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
SMPD4-213ENST00000454468 RAPGEF6Q8TEU7 1601 aa16.19■□□□□ 0.18
SMPD4-213ENST00000454468 EFCAB2Q5VUJ9 269 aa16.18■□□□□ 0.18
SMPD4-213ENST00000454468 AKNAQ7Z591 1439 aa16.18■□□□□ 0.18
SMPD4-213ENST00000454468 ROCK1Q13464 1354 aa16.16■□□□□ 0.18
SMPD4-213ENST00000454468 ATP10BO94823 1461 aa16.16■□□□□ 0.18
SMPD4-213ENST00000454468 TCOF1Q13428 1488 aaKnown RBP16.16■□□□□ 0.18
SMPD4-213ENST00000454468 CNTLNQ9NXG0 1405 aa16.16■□□□□ 0.18
SMPD4-213ENST00000454468 KIF3BO15066 747 aa16.15■□□□□ 0.18
SMPD4-213ENST00000454468 KIAA1107Q9UPP5 1409 aa16.15■□□□□ 0.18
SMPD4-213ENST00000454468 CEP170Q5SW79 1584 aa16.13■□□□□ 0.17
SMPD4-213ENST00000454468 GGT6Q6P531 493 aa16.12■□□□□ 0.17
SMPD4-213ENST00000454468 SPAG9O60271 1321 aaKnown RBP16.12■□□□□ 0.17
SMPD4-213ENST00000454468 RPRD2Q5VT52 1461 aaKnown RBP16.12■□□□□ 0.17
SMPD4-213ENST00000454468 CCDC144AA2RUR9 1427 aa16.11■□□□□ 0.17
SMPD4-213ENST00000454468 CCDC136Q96JN2 1154 aa16.11■□□□□ 0.17
SMPD4-213ENST00000454468 KIF14Q15058 1648 aa16.11■□□□□ 0.17
SMPD4-213ENST00000454468 RBM19Q9Y4C8 960 aaKnown RBP16.11■□□□□ 0.17
SMPD4-213ENST00000454468 NUTM2DQ5VT03 806 aaPredicted RBP16.1■□□□□ 0.17
SMPD4-213ENST00000454468 ARHGAP5Q13017 1502 aa16.1■□□□□ 0.17
SMPD4-213ENST00000454468 ANP32EQ9BTT0 268 aa16.1■□□□□ 0.17
SMPD4-213ENST00000454468 DENND4BO75064 1496 aaPredicted RBP16.09■□□□□ 0.17
SMPD4-213ENST00000454468 TNNT2P45379 298 aaPredicted RBP16.08■□□□□ 0.16
SMPD4-213ENST00000454468 RSPH4AQ5TD94 716 aa16.07■□□□□ 0.16
SMPD4-213ENST00000454468 PANK3Q9H999 370 aa16.06■□□□□ 0.16
SMPD4-213ENST00000454468 PPP4R2Q9NY27 417 aa16.05■□□□□ 0.16
SMPD4-213ENST00000454468 PZPP20742 1482 aa16.04■□□□□ 0.16
SMPD4-213ENST00000454468 TMF1P82094 1093 aa16.04■□□□□ 0.16
SMPD4-213ENST00000454468 KNSTRNQ9Y448 316 aa16.04■□□□□ 0.16
SMPD4-213ENST00000454468 NPM2Q86SE8 214 aaKnown RBP16.03■□□□□ 0.16
SMPD4-213ENST00000454468 NUP160Q12769 1436 aa16.03■□□□□ 0.16
SMPD4-213ENST00000454468 SAFB2Q14151 953 aaKnown RBP eCLIP16.03■□□□□ 0.16
SMPD4-213ENST00000454468 PLPPR3Q6T4P5 718 aa16.01■□□□□ 0.15
SMPD4-213ENST00000454468 DNMT1P26358 1616 aaKnown RBP16.01■□□□□ 0.15
SMPD4-213ENST00000454468 WDR43Q15061 677 aaKnown RBP eCLIP16■□□□□ 0.15
SMPD4-213ENST00000454468 ZBED9Q6R2W3 1325 aa16■□□□□ 0.15
SMPD4-213ENST00000454468 PLEKHH2Q8IVE3 1493 aa15.99■□□□□ 0.15
SMPD4-213ENST00000454468 NEUROD2Q15784 382 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms