RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	EIF4G3	O43432	1585 aa	Known RBP	11.82	□□□□□ -0.52
HCG18-238	ENST00000449544	ARHGAP5	Q13017	1502 aa		11.8	□□□□□ -0.52
HCG18-238	ENST00000449544	NUP155	O75694	1391 aa		11.79	□□□□□ -0.52
HCG18-238	ENST00000449544	NUTM2F	A1L443	756 aa		11.79	□□□□□ -0.52
HCG18-238	ENST00000449544	AKNA	Q7Z591	1439 aa		11.77	□□□□□ -0.52
HCG18-238	ENST00000449544	IQGAP2	Q13576	1575 aa		11.77	□□□□□ -0.52
HCG18-238	ENST00000449544	ARHGAP35	Q9NRY4	1499 aa		11.77	□□□□□ -0.53
HCG18-238	ENST00000449544	TONSL	Q96HA7	1378 aa		11.77	□□□□□ -0.53
HCG18-238	ENST00000449544	KANK4	Q5T7N3	995 aa	Predicted RBP	11.76	□□□□□ -0.53
HCG18-238	ENST00000449544	DENND4B	O75064	1496 aa	Predicted RBP	11.75	□□□□□ -0.53
HCG18-238	ENST00000449544	TOM1	O60784	492 aa		11.75	□□□□□ -0.53
HCG18-238	ENST00000449544	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.75	□□□□□ -0.53
HCG18-238	ENST00000449544	SOX12	O15370	315 aa		11.75	□□□□□ -0.53
HCG18-238	ENST00000449544	PKD2	Q13563	968 aa		11.74	□□□□□ -0.53
HCG18-238	ENST00000449544	ZNF644	Q9H582	1327 aa	Predicted RBP	11.74	□□□□□ -0.53
HCG18-238	ENST00000449544	PPP6R1	Q9UPN7	881 aa		11.74	□□□□□ -0.53
HCG18-238	ENST00000449544	SRPK2	P78362	688 aa	Known RBP	11.73	□□□□□ -0.53
HCG18-238	ENST00000449544	FOXD1	Q16676	465 aa		11.73	□□□□□ -0.53
HCG18-238	ENST00000449544	CSB-PGBD3	P0DP91	1061 aa		11.72	□□□□□ -0.53
HCG18-238	ENST00000449544	NGDN	Q8NEJ9	315 aa	Known RBP	11.72	□□□□□ -0.53
HCG18-238	ENST00000449544	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.72	□□□□□ -0.53
HCG18-238	ENST00000449544	NUTM2E	B1AL46	878 aa	Predicted RBP	11.72	□□□□□ -0.53
HCG18-238	ENST00000449544	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.72	□□□□□ -0.53
HCG18-238	ENST00000449544	THOC2	Q8NI27	1593 aa	Known RBP	11.71	□□□□□ -0.54
HCG18-238	ENST00000449544	DCAF8L1	A6NGE4	600 aa		11.71	□□□□□ -0.54
HCG18-238	ENST00000449544	VPS8	Q8N3P4	1428 aa		11.7	□□□□□ -0.54
HCG18-238	ENST00000449544	PHLDB1	Q86UU1	1377 aa		11.7	□□□□□ -0.54
HCG18-238	ENST00000449544	VGF	O15240	615 aa	Predicted RBP	11.7	□□□□□ -0.54
HCG18-238	ENST00000449544	ADGRL1	O94910	1474 aa		11.69	□□□□□ -0.54
HCG18-238	ENST00000449544	DCAF11	Q8TEB1	546 aa		11.69	□□□□□ -0.54
HCG18-238	ENST00000449544	ZEB1	P37275	1124 aa	Predicted RBP	11.69	□□□□□ -0.54
HCG18-238	ENST00000449544	SF3B2	Q13435	895 aa	Known RBP	11.69	□□□□□ -0.54
HCG18-238	ENST00000449544	SLC26A8	Q96RN1	970 aa		11.69	□□□□□ -0.54
HCG18-238	ENST00000449544	TRO	Q12816	1431 aa	Predicted RBP	11.68	□□□□□ -0.54
HCG18-238	ENST00000449544	PPM1G	O15355	546 aa	Predicted RBP	11.68	□□□□□ -0.54
HCG18-238	ENST00000449544	NUP160	Q12769	1436 aa		11.67	□□□□□ -0.54
HCG18-238	ENST00000449544	ARX	Q96QS3	562 aa		11.66	□□□□□ -0.54
HCG18-238	ENST00000449544	FANCA	O15360	1455 aa		11.65	□□□□□ -0.54
HCG18-238	ENST00000449544	WDR7	Q9Y4E6	1490 aa		11.65	□□□□□ -0.54
HCG18-238	ENST00000449544	EVA1C	P58658	441 aa		11.65	□□□□□ -0.54
HCG18-238	ENST00000449544	CUL7	Q14999	1698 aa		11.65	□□□□□ -0.54
HCG18-238	ENST00000449544	PLEKHH2	Q8IVE3	1493 aa		11.64	□□□□□ -0.55
HCG18-238	ENST00000449544	ABCC2	Q92887	1545 aa		11.64	□□□□□ -0.55
HCG18-238	ENST00000449544	ARAP1	Q96P48	1450 aa		11.63	□□□□□ -0.55
HCG18-238	ENST00000449544	KIF15	Q9NS87	1388 aa		11.63	□□□□□ -0.55
HCG18-238	ENST00000449544	NPHP1	O15259	732 aa		11.63	□□□□□ -0.55
HCG18-238	ENST00000449544	CEP170	Q5SW79	1584 aa		11.62	□□□□□ -0.55
HCG18-238	ENST00000449544	PSME1	Q06323	249 aa		11.62	□□□□□ -0.55
HCG18-238	ENST00000449544	PRX	Q9BXM0	1461 aa		11.62	□□□□□ -0.55
HCG18-238	ENST00000449544	MYOM3	Q5VTT5	1437 aa		11.61	□□□□□ -0.55
HCG18-238	ENST00000449544	SLC52A1	Q9NWF4	448 aa		11.6	□□□□□ -0.55
HCG18-238	ENST00000449544	CDCA8	Q53HL2	280 aa		11.6	□□□□□ -0.55
HCG18-238	ENST00000449544	CARD11	Q9BXL7	1154 aa		11.6	□□□□□ -0.55
HCG18-238	ENST00000449544	ADAMTS12	P58397	1594 aa		11.59	□□□□□ -0.55
HCG18-238	ENST00000449544	CASKIN1	Q8WXD9	1431 aa		11.58	□□□□□ -0.56
HCG18-238	ENST00000449544	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.58	□□□□□ -0.56
HCG18-238	ENST00000449544	LMTK3	Q96Q04	1460 aa		11.58	□□□□□ -0.56
HCG18-238	ENST00000449544	TRAK1	Q9UPV9	953 aa		11.56	□□□□□ -0.56
HCG18-238	ENST00000449544	EFCAB5	A4FU69	1503 aa		11.56	□□□□□ -0.56
HCG18-238	ENST00000449544	ESCO1	Q5FWF5	840 aa		11.56	□□□□□ -0.56
HCG18-238	ENST00000449544	CDK13	Q14004	1512 aa	Known RBP	11.54	□□□□□ -0.56
HCG18-238	ENST00000449544	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.54	□□□□□ -0.56
HCG18-238	ENST00000449544	UHRF1BP1	Q6BDS2	1440 aa		11.54	□□□□□ -0.56
HCG18-238	ENST00000449544	NGLY1	Q96IV0	654 aa		11.54	□□□□□ -0.56
HCG18-238	ENST00000449544	NCKAP5L	Q9HCH0	1330 aa		11.54	□□□□□ -0.56
HCG18-238	ENST00000449544	ATP10B	O94823	1461 aa		11.54	□□□□□ -0.56
HCG18-238	ENST00000449544	MPHOSPH9	Q99550	1183 aa		11.54	□□□□□ -0.56
HCG18-238	ENST00000449544	RBM33	Q96EV2	1170 aa	Known RBP	11.53	□□□□□ -0.56
HCG18-238	ENST00000449544	MSH5	O43196	834 aa		11.53	□□□□□ -0.56
HCG18-238	ENST00000449544	EPRS	P07814	1512 aa	Known RBP	11.52	□□□□□ -0.56
HCG18-238	ENST00000449544	ADAMTS2	O95450	1211 aa		11.52	□□□□□ -0.57
HCG18-238	ENST00000449544	KLHL34	Q8N239	644 aa		11.52	□□□□□ -0.57
HCG18-238	ENST00000449544	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.51	□□□□□ -0.57
HCG18-238	ENST00000449544	RIMBP3C	A6NJZ7	1639 aa		11.51	□□□□□ -0.57
HCG18-238	ENST00000449544	RIMBP3B	A6NNM3	1639 aa		11.51	□□□□□ -0.57
HCG18-238	ENST00000449544	RIMBP3	Q9UFD9	1639 aa		11.51	□□□□□ -0.57
HCG18-238	ENST00000449544	TNR	Q92752	1358 aa		11.5	□□□□□ -0.57
HCG18-238	ENST00000449544	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.5	□□□□□ -0.57
HCG18-238	ENST00000449544	CHD1	O14646	1710 aa		11.5	□□□□□ -0.57
HCG18-238	ENST00000449544	USP35	Q9P2H5	1018 aa		11.5	□□□□□ -0.57
HCG18-238	ENST00000449544	WDR97	A6NE52	1622 aa		11.5	□□□□□ -0.57
HCG18-238	ENST00000449544	HECW1	Q76N89	1606 aa		11.5	□□□□□ -0.57
HCG18-238	ENST00000449544	TARBP1	Q13395	1621 aa	Known RBP	11.49	□□□□□ -0.57
HCG18-238	ENST00000449544	CCDC144A	A2RUR9	1427 aa		11.49	□□□□□ -0.57
HCG18-238	ENST00000449544	CADPS2	Q86UW7	1296 aa		11.49	□□□□□ -0.57
HCG18-238	ENST00000449544	ABCC10	Q5T3U5	1492 aa		11.48	□□□□□ -0.57
HCG18-238	ENST00000449544	ANKRD50	Q9ULJ7	1429 aa		11.48	□□□□□ -0.57
HCG18-238	ENST00000449544	BIVM-ERCC5	R4GMW8	1640 aa		11.48	□□□□□ -0.57
HCG18-238	ENST00000449544	PLCH2	O75038	1416 aa		11.48	□□□□□ -0.57
HCG18-238	ENST00000449544	TNNT2	P45379	298 aa	Predicted RBP	11.48	□□□□□ -0.57
HCG18-238	ENST00000449544	NCOA2	Q15596	1464 aa		11.47	□□□□□ -0.57
HCG18-238	ENST00000449544	LTV1	Q96GA3	475 aa	Predicted RBP	11.47	□□□□□ -0.57
HCG18-238	ENST00000449544	FYCO1	Q9BQS8	1478 aa		11.46	□□□□□ -0.57
HCG18-238	ENST00000449544	C9orf84	Q5VXU9	1444 aa		11.46	□□□□□ -0.58
HCG18-238	ENST00000449544	MSH6	P52701	1360 aa		11.45	□□□□□ -0.58
HCG18-238	ENST00000449544	KDM6B	O15054	1643 aa		11.45	□□□□□ -0.58
HCG18-238	ENST00000449544	ZNF518A	Q6AHZ1	1483 aa		11.45	□□□□□ -0.58
HCG18-238	ENST00000449544	KNSTRN	Q9Y448	316 aa		11.45	□□□□□ -0.58
HCG18-238	ENST00000449544	GPRASP1	Q5JY77	1395 aa		11.45	□□□□□ -0.58
HCG18-238	ENST00000449544	DISP3	Q9P2K9	1392 aa		11.45	□□□□□ -0.58

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