RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 MCCP23508 829 aa10.96□□□□□ -0.65
PTPN3-204ENST00000446349 JPH4Q96JJ6 628 aa10.96□□□□□ -0.66
PTPN3-204ENST00000446349 GOLGA6L6A8MZA4 724 aa10.95□□□□□ -0.66
PTPN3-204ENST00000446349 LAS1LQ9Y4W2 734 aaKnown RBP10.95□□□□□ -0.66
PTPN3-204ENST00000446349 TDRD9Q8NDG6 1382 aaKnown RBP10.95□□□□□ -0.66
PTPN3-204ENST00000446349 NRDCO43847 1150 aa10.94□□□□□ -0.66
PTPN3-204ENST00000446349 LMOD3Q0VAK6 560 aa10.94□□□□□ -0.66
PTPN3-204ENST00000446349 WASHC2CQ9Y4E1 1318 aa10.94□□□□□ -0.66
PTPN3-204ENST00000446349 KTN1Q86UP2 1357 aaKnown RBP10.94□□□□□ -0.66
PTPN3-204ENST00000446349 FGD1P98174 961 aa10.94□□□□□ -0.66
PTPN3-204ENST00000446349 NUP155O75694 1391 aa10.93□□□□□ -0.66
PTPN3-204ENST00000446349 ROCK2O75116 1388 aaKnown RBP10.93□□□□□ -0.66
PTPN3-204ENST00000446349 STAC3Q96MF2 364 aa10.92□□□□□ -0.66
PTPN3-204ENST00000446349 KCNJ4P48050 445 aa10.92□□□□□ -0.66
PTPN3-204ENST00000446349 CSB-PGBD3P0DP91 1061 aa10.92□□□□□ -0.66
PTPN3-204ENST00000446349 PTPRGP23470 1445 aa10.92□□□□□ -0.66
PTPN3-204ENST00000446349 RALBP1Q15311 655 aa10.91□□□□□ -0.66
PTPN3-204ENST00000446349 ANO8Q9HCE9 1232 aaPredicted RBP10.91□□□□□ -0.66
PTPN3-204ENST00000446349 PKD2Q13563 968 aa10.91□□□□□ -0.66
PTPN3-204ENST00000446349 KIF3BO15066 747 aa10.9□□□□□ -0.66
PTPN3-204ENST00000446349 GLIPR1L2Q4G1C9 344 aa10.9□□□□□ -0.66
PTPN3-204ENST00000446349 PHLDB1Q86UU1 1377 aa10.9□□□□□ -0.66
PTPN3-204ENST00000446349 L1TD1Q5T7N2 865 aaKnown RBP10.89□□□□□ -0.67
PTPN3-204ENST00000446349 AEBP2Q6ZN18 517 aaPredicted RBP10.89□□□□□ -0.67
PTPN3-204ENST00000446349 PAK3O75914 559 aaPredicted RBP10.89□□□□□ -0.67
PTPN3-204ENST00000446349 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.89□□□□□ -0.67
PTPN3-204ENST00000446349 TRIM44Q96DX7 344 aaPredicted RBP10.88□□□□□ -0.67
PTPN3-204ENST00000446349 GPATCH3Q96I76 525 aa10.88□□□□□ -0.67
PTPN3-204ENST00000446349 GAPVD1Q14C86 1478 aa10.88□□□□□ -0.67
PTPN3-204ENST00000446349 CUX1P39880 1505 aa10.88□□□□□ -0.67
PTPN3-204ENST00000446349 VGFO15240 615 aaPredicted RBP10.87□□□□□ -0.67
PTPN3-204ENST00000446349 SENP3Q9H4L4 574 aaPredicted RBP10.87□□□□□ -0.67
PTPN3-204ENST00000446349 PRDM2Q13029 1718 aa10.87□□□□□ -0.67
PTPN3-204ENST00000446349 CCER2I3L3R5 266 aa10.86□□□□□ -0.67
PTPN3-204ENST00000446349 HMGB2P26583 209 aaKnown RBP10.86□□□□□ -0.67
PTPN3-204ENST00000446349 NGDNQ8NEJ9 315 aaKnown RBP10.86□□□□□ -0.67
PTPN3-204ENST00000446349 PTMSP20962 102 aa10.86□□□□□ -0.67
PTPN3-204ENST00000446349 CCDC34Q96HJ3 373 aa10.85□□□□□ -0.67
PTPN3-204ENST00000446349 STK31Q9BXU1 1019 aa10.85□□□□□ -0.67
PTPN3-204ENST00000446349 NEUROD2Q15784 382 aa10.85□□□□□ -0.67
PTPN3-204ENST00000446349 CC2D1BQ5T0F9 858 aaKnown RBP10.85□□□□□ -0.67
PTPN3-204ENST00000446349 CHMP4CQ96CF2 233 aa10.85□□□□□ -0.67
PTPN3-204ENST00000446349 STK26Q9P289 416 aa10.85□□□□□ -0.67
PTPN3-204ENST00000446349 MPHOSPH9Q99550 1183 aa10.85□□□□□ -0.67
PTPN3-204ENST00000446349 KIAA1211Q6ZU35 1233 aa10.84□□□□□ -0.67
PTPN3-204ENST00000446349 HTATSF1O43719 755 aaKnown RBP10.84□□□□□ -0.67
PTPN3-204ENST00000446349 CCDC9Q9Y3X0 531 aaKnown RBP10.83□□□□□ -0.68
PTPN3-204ENST00000446349 CCDC144AA2RUR9 1427 aa10.83□□□□□ -0.68
PTPN3-204ENST00000446349 TNNT2P45379 298 aaPredicted RBP10.83□□□□□ -0.68
PTPN3-204ENST00000446349 NCAPD3P42695 1498 aa10.83□□□□□ -0.68
PTPN3-204ENST00000446349 HMMRO75330 724 aa10.83□□□□□ -0.68
PTPN3-204ENST00000446349 ERICH6BQ5W0A0 696 aa10.82□□□□□ -0.68
PTPN3-204ENST00000446349 FRAT1Q92837 279 aaPredicted RBP10.82□□□□□ -0.68
PTPN3-204ENST00000446349 PPP4R2Q9NY27 417 aa10.82□□□□□ -0.68
PTPN3-204ENST00000446349 GOLGA6L4A6NEF3 574 aa10.82□□□□□ -0.68
PTPN3-204ENST00000446349 WASHC2AQ641Q2 1341 aa10.81□□□□□ -0.68
PTPN3-204ENST00000446349 G3V3G9 751 aa10.81□□□□□ -0.68
PTPN3-204ENST00000446349 DCAF8Q5TAQ9 597 aa10.81□□□□□ -0.68
PTPN3-204ENST00000446349 AMPHP49418 695 aa10.81□□□□□ -0.68
PTPN3-204ENST00000446349 FOXD1Q16676 465 aa10.8□□□□□ -0.68
PTPN3-204ENST00000446349 HSP90AB1P08238 724 aaKnown RBP10.8□□□□□ -0.68
PTPN3-204ENST00000446349 LRRFIP1Q32MZ4 808 aaKnown RBP10.8□□□□□ -0.68
PTPN3-204ENST00000446349 TAF7LQ5H9L4 462 aa10.8□□□□□ -0.68
PTPN3-204ENST00000446349 NGEFQ8N5V2 710 aa10.8□□□□□ -0.68
PTPN3-204ENST00000446349 EVC2Q86UK5 1308 aa10.8□□□□□ -0.68
PTPN3-204ENST00000446349 HIRIP3Q9BW71 556 aaPredicted RBP10.8□□□□□ -0.68
PTPN3-204ENST00000446349 GRIN2BQ13224 1484 aa10.79□□□□□ -0.68
PTPN3-204ENST00000446349 PTMAP06454 111 aaKnown RBP10.79□□□□□ -0.68
PTPN3-204ENST00000446349 MYOM3Q5VTT5 1437 aa10.78□□□□□ -0.68
PTPN3-204ENST00000446349 HNRNPMP52272 730 aaKnown RBP eCLIP10.78□□□□□ -0.68
PTPN3-204ENST00000446349 WWC1Q8IX03 1113 aa10.78□□□□□ -0.68
PTPN3-204ENST00000446349 MIER1Q8N108 512 aa10.78□□□□□ -0.68
PTPN3-204ENST00000446349 U2AF1L5P0DN76 240 aaPredicted RBP10.78□□□□□ -0.68
PTPN3-204ENST00000446349 U2AF1Q01081 240 aaKnown RBP eCLIP10.78□□□□□ -0.68
PTPN3-204ENST00000446349 HSCBQ8IWL3 235 aa10.78□□□□□ -0.68
PTPN3-204ENST00000446349 PLEKHH2Q8IVE3 1493 aa10.78□□□□□ -0.68
PTPN3-204ENST00000446349 FHOD3Q2V2M9 1422 aa10.78□□□□□ -0.68
PTPN3-204ENST00000446349 GORABQ5T7V8 394 aa10.78□□□□□ -0.68
PTPN3-204ENST00000446349 GNL2Q13823 731 aaKnown RBP10.77□□□□□ -0.68
PTPN3-204ENST00000446349 SAFB2Q14151 953 aaKnown RBP eCLIP10.77□□□□□ -0.68
PTPN3-204ENST00000446349 FGD5Q6ZNL6 1462 aa10.77□□□□□ -0.69
PTPN3-204ENST00000446349 CHAF1AQ13111 956 aaPredicted RBP10.77□□□□□ -0.69
PTPN3-204ENST00000446349 SOX12O15370 315 aa10.77□□□□□ -0.69
PTPN3-204ENST00000446349 EVA1CP58658 441 aa10.77□□□□□ -0.69
PTPN3-204ENST00000446349 CYB5RLQ6IPT4 315 aa10.77□□□□□ -0.69
PTPN3-204ENST00000446349 MRC2Q9UBG0 1479 aa10.76□□□□□ -0.69
PTPN3-204ENST00000446349 PMFBP1Q8TBY8 1022 aa10.76□□□□□ -0.69
PTPN3-204ENST00000446349 RWDD1Q9H446 243 aaPredicted RBP10.76□□□□□ -0.69
PTPN3-204ENST00000446349 DCAF8L1A6NGE4 600 aa10.76□□□□□ -0.69
PTPN3-204ENST00000446349 SIN3AQ96ST3 1273 aa10.76□□□□□ -0.69
PTPN3-204ENST00000446349 NAP1L2Q9ULW6 460 aaPredicted RBP10.76□□□□□ -0.69
PTPN3-204ENST00000446349 IFT140Q96RY7 1462 aa10.76□□□□□ -0.69
PTPN3-204ENST00000446349 KIF3AQ9Y496 699 aa10.76□□□□□ -0.69
PTPN3-204ENST00000446349 PDE3BQ13370 1112 aa10.75□□□□□ -0.69
PTPN3-204ENST00000446349 C1orf141Q5JVX7 400 aa10.75□□□□□ -0.69
PTPN3-204ENST00000446349 RAB3GAP2Q9H2M9 1393 aa10.75□□□□□ -0.69
PTPN3-204ENST00000446349 SYNJ2O15056 1496 aa10.75□□□□□ -0.69
PTPN3-204ENST00000446349 HMGXB3Q12766 1538 aa10.75□□□□□ -0.69
PTPN3-204ENST00000446349 KIF21BO75037 1637 aa10.75□□□□□ -0.69
PTPN3-204ENST00000446349 CGNL1Q0VF96 1302 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms