RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 CCDC27Q2M243 656 aa14.73□□□□□ -0.05
SYNE2-206ENST00000441438 PIAS4Q8N2W9 510 aaPredicted RBP14.72□□□□□ -0.05
SYNE2-206ENST00000441438 PPARGC1BQ86YN6 1023 aaKnown RBP14.72□□□□□ -0.05
SYNE2-206ENST00000441438 APBB1O00213 710 aa14.69□□□□□ -0.06
SYNE2-206ENST00000441438 URB2Q14146 1524 aaKnown RBP14.68□□□□□ -0.06
SYNE2-206ENST00000441438 TOPBP1Q92547 1522 aa14.68□□□□□ -0.06
SYNE2-206ENST00000441438 NEUROD2Q15784 382 aa14.67□□□□□ -0.06
SYNE2-206ENST00000441438 ABCA5Q8WWZ7 1642 aa14.67□□□□□ -0.06
SYNE2-206ENST00000441438 KDM4AO75164 1064 aa14.66□□□□□ -0.06
SYNE2-206ENST00000441438 GLIPR1L2Q4G1C9 344 aa14.66□□□□□ -0.06
SYNE2-206ENST00000441438 SECISBP2LQ93073 1101 aaKnown RBP14.66□□□□□ -0.06
SYNE2-206ENST00000441438 MFAP1P55081 439 aaKnown RBP14.64□□□□□ -0.07
SYNE2-206ENST00000441438 GRIPAP1Q4V328 841 aa14.62□□□□□ -0.07
SYNE2-206ENST00000441438 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
SYNE2-206ENST00000441438 SETQ01105 290 aaPredicted RBP14.62□□□□□ -0.07
SYNE2-206ENST00000441438 AEBP1Q8IUX7 1158 aa14.62□□□□□ -0.07
SYNE2-206ENST00000441438 ABCA10Q8WWZ4 1543 aa14.61□□□□□ -0.07
SYNE2-206ENST00000441438 WWC1Q8IX03 1113 aa14.61□□□□□ -0.07
SYNE2-206ENST00000441438 FAM43BQ6ZT52 329 aaPredicted RBP14.6□□□□□ -0.07
SYNE2-206ENST00000441438 E9PSI1 815 aa14.6□□□□□ -0.07
SYNE2-206ENST00000441438 TMCO4Q5TGY1 634 aa14.6□□□□□ -0.07
SYNE2-206ENST00000441438 KCNG1Q9UIX4 513 aa14.58□□□□□ -0.07
SYNE2-206ENST00000441438 IPO4Q8TEX9 1081 aaKnown RBP14.58□□□□□ -0.08
SYNE2-206ENST00000441438 PTMSP20962 102 aa14.57□□□□□ -0.08
SYNE2-206ENST00000441438 ANAPC15P60006 121 aa14.57□□□□□ -0.08
SYNE2-206ENST00000441438 PBRM1Q86U86 1689 aa14.57□□□□□ -0.08
SYNE2-206ENST00000441438 CUX1P39880 1505 aa14.56□□□□□ -0.08
SYNE2-206ENST00000441438 ERICH3Q5RHP9 1530 aa14.56□□□□□ -0.08
SYNE2-206ENST00000441438 CUL7Q14999 1698 aa14.55□□□□□ -0.08
SYNE2-206ENST00000441438 MAFGO15525 162 aa14.53□□□□□ -0.08
SYNE2-206ENST00000441438 IFNLR1Q8IU57 520 aaPredicted RBP14.51□□□□□ -0.09
SYNE2-206ENST00000441438 MAGI1Q96QZ7 1491 aaPredicted RBP14.51□□□□□ -0.09
SYNE2-206ENST00000441438 MCCP23508 829 aa14.5□□□□□ -0.09
SYNE2-206ENST00000441438 CCDC125Q86Z20 511 aa14.5□□□□□ -0.09
SYNE2-206ENST00000441438 EIF4G3O43432 1585 aaKnown RBP14.5□□□□□ -0.09
SYNE2-206ENST00000441438 GZF1Q9H116 711 aaPredicted RBP14.47□□□□□ -0.09
SYNE2-206ENST00000441438 POLA1P09884 1462 aaPredicted RBP14.47□□□□□ -0.09
SYNE2-206ENST00000441438 CHMP4BQ9H444 224 aaKnown RBP14.47□□□□□ -0.09
SYNE2-206ENST00000441438 DNAJC2Q99543 621 aaKnown RBP14.47□□□□□ -0.09
SYNE2-206ENST00000441438 ZNF316A6NFI3 1004 aaPredicted RBP14.46□□□□□ -0.09
SYNE2-206ENST00000441438 GPATCH11Q8N954 259 aa14.46□□□□□ -0.09
SYNE2-206ENST00000441438 CCDC82Q8N4S0 544 aa14.45□□□□□ -0.1
SYNE2-206ENST00000441438 MYT1LQ9UL68 1186 aa14.45□□□□□ -0.1
SYNE2-206ENST00000441438 TRAIPQ9BWF2 469 aa14.45□□□□□ -0.1
SYNE2-206ENST00000441438 FTSJ3Q8IY81 847 aaKnown RBP14.43□□□□□ -0.1
SYNE2-206ENST00000441438 SHROOM2Q13796 1616 aa14.43□□□□□ -0.1
SYNE2-206ENST00000441438 SYNJ1O43426 1573 aa14.43□□□□□ -0.1
SYNE2-206ENST00000441438 ADAMTS12P58397 1594 aa14.42□□□□□ -0.1
SYNE2-206ENST00000441438 LOC102724159A0A0B4J2E5 919 aa14.4□□□□□ -0.1
SYNE2-206ENST00000441438 PWP2Q15269 919 aaKnown RBP14.4□□□□□ -0.1
SYNE2-206ENST00000441438 CLASP1Q7Z460 1538 aa14.39□□□□□ -0.11
SYNE2-206ENST00000441438 FGD5Q6ZNL6 1462 aa14.39□□□□□ -0.11
SYNE2-206ENST00000441438 LMOD2Q6P5Q4 547 aa14.38□□□□□ -0.11
SYNE2-206ENST00000441438 WRNQ14191 1432 aaPredicted RBP eCLIP14.38□□□□□ -0.11
SYNE2-206ENST00000441438 EEA1Q15075 1411 aa14.38□□□□□ -0.11
SYNE2-206ENST00000441438 OS9Q13438 667 aaPredicted RBP14.38□□□□□ -0.11
SYNE2-206ENST00000441438 EXOC8Q8IYI6 725 aa14.37□□□□□ -0.11
SYNE2-206ENST00000441438 TRIM41Q8WV44 630 aa14.37□□□□□ -0.11
SYNE2-206ENST00000441438 GRIN2BQ13224 1484 aa14.37□□□□□ -0.11
SYNE2-206ENST00000441438 PTMAP06454 111 aaKnown RBP14.36□□□□□ -0.11
SYNE2-206ENST00000441438 FAM50AQ14320 339 aaKnown RBP14.36□□□□□ -0.11
SYNE2-206ENST00000441438 NEFMP07197 916 aa14.34□□□□□ -0.11
SYNE2-206ENST00000441438 HSP90AB4PQ58FF6 505 aa14.34□□□□□ -0.11
SYNE2-206ENST00000441438 VASPP50552 380 aaPredicted RBP14.32□□□□□ -0.12
SYNE2-206ENST00000441438 TMTC2Q8N394 836 aa14.32□□□□□ -0.12
SYNE2-206ENST00000441438 RIPOR2Q9Y4F9 1068 aa14.32□□□□□ -0.12
SYNE2-206ENST00000441438 LAS1LQ9Y4W2 734 aaKnown RBP14.31□□□□□ -0.12
SYNE2-206ENST00000441438 PLEKHD1A6NEE1 506 aa14.31□□□□□ -0.12
SYNE2-206ENST00000441438 BRD1O95696 1058 aa14.3□□□□□ -0.12
SYNE2-206ENST00000441438 SGSM3Q96HU1 749 aa14.3□□□□□ -0.12
SYNE2-206ENST00000441438 CHD1O14646 1710 aa14.29□□□□□ -0.12
SYNE2-206ENST00000441438 SLC24A3Q9HC58 644 aa14.29□□□□□ -0.12
SYNE2-206ENST00000441438 SYNJ2O15056 1496 aa14.29□□□□□ -0.12
SYNE2-206ENST00000441438 ACIN1Q9UKV3 1341 aaKnown RBP14.27□□□□□ -0.12
SYNE2-206ENST00000441438 FAM193AP78312 1265 aa14.27□□□□□ -0.12
SYNE2-206ENST00000441438 SMARCA5O60264 1052 aaPredicted RBP14.26□□□□□ -0.13
SYNE2-206ENST00000441438 FAM9BQ8IZU0 186 aa14.26□□□□□ -0.13
SYNE2-206ENST00000441438 NUP160Q12769 1436 aa14.26□□□□□ -0.13
SYNE2-206ENST00000441438 SOGA1O94964 1423 aa14.25□□□□□ -0.13
SYNE2-206ENST00000441438 MKRN3Q13064 507 aaKnown RBP14.24□□□□□ -0.13
SYNE2-206ENST00000441438 FHAD1B1AJZ9 1412 aa14.23□□□□□ -0.13
SYNE2-206ENST00000441438 RGL2O15211 777 aa14.23□□□□□ -0.13
SYNE2-206ENST00000441438 KIF21BO75037 1637 aa14.23□□□□□ -0.13
SYNE2-206ENST00000441438 GAPVD1Q14C86 1478 aa14.22□□□□□ -0.13
SYNE2-206ENST00000441438 ECM2O94769 699 aaPredicted RBP14.22□□□□□ -0.13
SYNE2-206ENST00000441438 GTF2E1P29083 439 aaPredicted RBP14.21□□□□□ -0.13
SYNE2-206ENST00000441438 NOL8Q76FK4 1167 aaKnown RBP14.21□□□□□ -0.13
SYNE2-206ENST00000441438 CTTNBP2Q8WZ74 1663 aa14.21□□□□□ -0.14
SYNE2-206ENST00000441438 FOXD4L6Q3SYB3 417 aaPredicted RBP14.2□□□□□ -0.14
SYNE2-206ENST00000441438 FOXD4L3Q6VB84 417 aaPredicted RBP14.2□□□□□ -0.14
SYNE2-206ENST00000441438 RUSC2Q8N2Y8 1516 aa14.2□□□□□ -0.14
SYNE2-206ENST00000441438 OSCARQ8IYS5 282 aa14.19□□□□□ -0.14
SYNE2-206ENST00000441438 PATL2C9JE40 543 aaKnown RBP14.18□□□□□ -0.14
SYNE2-206ENST00000441438 IRF5Q13568 498 aa14.16□□□□□ -0.14
SYNE2-206ENST00000441438 ZNF608Q9ULD9 1512 aaPredicted RBP14.16□□□□□ -0.14
SYNE2-206ENST00000441438 SPTY2D1Q68D10 685 aaPredicted RBP14.16□□□□□ -0.14
SYNE2-206ENST00000441438 KIF27Q86VH2 1401 aa14.15□□□□□ -0.14
SYNE2-206ENST00000441438 FBXW7Q969H0 707 aa14.14□□□□□ -0.15
SYNE2-206ENST00000441438 GRIN2AQ12879 1464 aa14.13□□□□□ -0.15
SYNE2-206ENST00000441438 PHF14O94880 888 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms